Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2315 ATGGATTCTTTCGGAGGTTTCAATGGGGAAGGGGAATGGGATTTATGCAGCTCAATTTTATCATTGGAAGACCTTGATTTTACGCCAATTAATCTCCCTCAACCCACTTCAGGCTTCATGGCTGATGCTTGGTTTTGTTCTTTGGATTCCATCACTGCTAATTTGCCTTCTTGTCATGTTGGTAATGCTATTGATCAATTTCCTTTTATTGCTGCTGCTTCTGATCAACATCATCATCATCATCATCACGTGTCCATGTCCATTGAAGAGAATAAGATGGAATCCATTTTCTCAGCTTCTACTACTGACATCTTGCTCCAAGAAATCACTGGCTTTTCGAGTGAAAATAAATTTCTTGACATGGATGCTCAAACCCACCTAGGGGATGATGATCATAATAATGCTACCAATTCTGCAAATGCATTATTCCACCACAAAAGGAAATCCATTGTTGTCGATGATGATCATAACAAGCTCATCAACCCCAATAAGAAAATTCGTACTTCAAACAATGTGCAGAAAAGTAGGAAAGGCAGAGAGTCAAGTGGTAAAAGTAATAGCTCTAGCAAAGAGAAAGTGATGAGCAGTACTCGGCGGAGCAAATGTGAAGAAGAAGAAGAACAGGAAAATGGAGGGTCGTGCGATATGAACAGTTGCACCAGCGATAACTCATCAGAAGATGACAATGCTTCACAAGATACCAATGGCGGTGGCTCTGTTTTAGAGCCACCAAAACCCAAAACAAGAGCCACCAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAACGGCTTAGAATTCTGCAGAAGCTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTAAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAACTGTGGATGTATGCCCCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCATTTTTATGA 1017 41.1 MDSFGGFNGEGEWDLCSSILSLEDLDFTPINLPQPTSGFMADAWFCSLDSITANLPSCHVGNAIDQFPFIAAASDQHHHHHHHVSMSIEENKMESIFSASTTDILLQEITGFSSENKFLDMDAQTHLGDDDHNNATNSANALFHHKRKSIVVDDDHNKLINPNKKIRTSNNVQKSRKGRESSGKSNSSSKEKVMSSTRRSKCEEEEEQENGGSCDMNSCTSDNSSEDDNASQDTNGGGSVLEPPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSFL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31736835 31738678 + CcPI632755_05g023150.1 Cco05g2315 179943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2315 338 Gene3D - 256 312 IPR036638 GO:0046983(InterPro)
Cco05g2315 338 MobiDBLite consensus disorder prediction 153 266 - -
Cco05g2315 338 MobiDBLite consensus disorder prediction 212 238 - -
Cco05g2315 338 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 83 314 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2315 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 303 IPR011598 GO:0046983(InterPro)
Cco05g2315 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 320 IPR036638 GO:0046983(InterPro)
Cco05g2315 338 FunFam Basic helix-loop-helix transcription factor 255 312 - -
Cco05g2315 338 CDD bHLH_AtIND_like 255 317 - -
Cco05g2315 338 SMART finulus 260 309 IPR011598 GO:0046983(InterPro)
Cco05g2315 338 Pfam Helix-loop-helix DNA-binding domain 264 304 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0747 Cco-Chr2:7773699 Cco05g2315 Cco-Chr5:31736835 8.30E-37 dispersed
Cco05g2315 Cco-Chr5:31736835 Cco10g1016 Cco-Chr10:21824618 1.60E-38 dispersed
Cco03g0877 Cco-Chr3:10562778 Cco05g2315 Cco-Chr5:31736835 1.60E-18 transposed
Cco05g2315 Cco-Chr5:31736835 Cco08g1827 Cco-Chr8:29297293 2.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59360 PF00010 HLH 1.00E-08 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2315 - - - 0.0