Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2315 | ATGGATTCTTTCGGAGGTTTCAATGGGGAAGGGGAATGGGATTTATGCAGCTCAATTTTATCATTGGAAGACCTTGATTTTACGCCAATTAATCTCCCTCAACCCACTTCAGGCTTCATGGCTGATGCTTGGTTTTGTTCTTTGGATTCCATCACTGCTAATTTGCCTTCTTGTCATGTTGGTAATGCTATTGATCAATTTCCTTTTATTGCTGCTGCTTCTGATCAACATCATCATCATCATCATCACGTGTCCATGTCCATTGAAGAGAATAAGATGGAATCCATTTTCTCAGCTTCTACTACTGACATCTTGCTCCAAGAAATCACTGGCTTTTCGAGTGAAAATAAATTTCTTGACATGGATGCTCAAACCCACCTAGGGGATGATGATCATAATAATGCTACCAATTCTGCAAATGCATTATTCCACCACAAAAGGAAATCCATTGTTGTCGATGATGATCATAACAAGCTCATCAACCCCAATAAGAAAATTCGTACTTCAAACAATGTGCAGAAAAGTAGGAAAGGCAGAGAGTCAAGTGGTAAAAGTAATAGCTCTAGCAAAGAGAAAGTGATGAGCAGTACTCGGCGGAGCAAATGTGAAGAAGAAGAAGAACAGGAAAATGGAGGGTCGTGCGATATGAACAGTTGCACCAGCGATAACTCATCAGAAGATGACAATGCTTCACAAGATACCAATGGCGGTGGCTCTGTTTTAGAGCCACCAAAACCCAAAACAAGAGCCACCAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAACGGCTTAGAATTCTGCAGAAGCTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTAAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAACTGTGGATGTATGCCCCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCATTTTTATGA | 1017 | 41.1 | MDSFGGFNGEGEWDLCSSILSLEDLDFTPINLPQPTSGFMADAWFCSLDSITANLPSCHVGNAIDQFPFIAAASDQHHHHHHHVSMSIEENKMESIFSASTTDILLQEITGFSSENKFLDMDAQTHLGDDDHNNATNSANALFHHKRKSIVVDDDHNKLINPNKKIRTSNNVQKSRKGRESSGKSNSSSKEKVMSSTRRSKCEEEEEQENGGSCDMNSCTSDNSSEDDNASQDTNGGGSVLEPPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSFL | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31736835 | 31738678 | + | CcPI632755_05g023150.1 | Cco05g2315 | 179943 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2315 | 338 | Gene3D | - | 256 | 312 | IPR036638 | GO:0046983(InterPro) | |
Cco05g2315 | 338 | MobiDBLite | consensus disorder prediction | 153 | 266 | - | - | |
Cco05g2315 | 338 | MobiDBLite | consensus disorder prediction | 212 | 238 | - | - | |
Cco05g2315 | 338 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 83 | 314 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2315 | 338 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 254 | 303 | IPR011598 | GO:0046983(InterPro) | |
Cco05g2315 | 338 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 253 | 320 | IPR036638 | GO:0046983(InterPro) | |
Cco05g2315 | 338 | FunFam | Basic helix-loop-helix transcription factor | 255 | 312 | - | - | |
Cco05g2315 | 338 | CDD | bHLH_AtIND_like | 255 | 317 | - | - | |
Cco05g2315 | 338 | SMART | finulus | 260 | 309 | IPR011598 | GO:0046983(InterPro) | |
Cco05g2315 | 338 | Pfam | Helix-loop-helix DNA-binding domain | 264 | 304 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0747 | Cco-Chr2:7773699 | Cco05g2315 | Cco-Chr5:31736835 | 8.30E-37 | dispersed | |
Cco05g2315 | Cco-Chr5:31736835 | Cco10g1016 | Cco-Chr10:21824618 | 1.60E-38 | dispersed | |
Cco03g0877 | Cco-Chr3:10562778 | Cco05g2315 | Cco-Chr5:31736835 | 1.60E-18 | transposed | |
Cco05g2315 | Cco-Chr5:31736835 | Cco08g1827 | Cco-Chr8:29297293 | 2.60E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59360 | PF00010 | HLH | 1.00E-08 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2315 | - | - | - | 0.0 |