Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2316 ATGGCCTCGGCGGAGCAGCCTCTCAAGAAGCGCCGGAACTACGGACCACTCGCTCCAGAACCACCGCCCCTACTTCACCAGTTGCCTCAGCCACCGCCACCGCAAATTCCAGTGACGGACCAGACTTCCGCCGCTCCATCGCCTCCCACTCCACCTCAACTGTCCCAAGCCGAAATCCTCCTCAGGAGAAGGAATAGAGATGAGATTAGAAGCGTCTATGAATGTTTTAAGCGAATCAGGTTTTTCCTTTCGCAGAAAGAGAAGGGCGCTCCCACACCTGATATCGAGCAGGCATATCTTTCTCTCATTACTGCTTCGAGAGGGTGCACCAGTGTAAAGCGTATTGTGGCTGACTTTATTCCTCGCTATGCACCTCATTGTCCAACTGCTCTGGAAGCTGCAACAAAAGTTATCATCAATATGCATAATCAGAGCTTGGAAATAATAAATAATGGGGAGGATGTTGATAACGTTGCGTTTGAGACAGCAAGTGCTTGTATTATTGGTTTAATTGATATTTGTGCTGCTGTAATATCTAAGGCGCATACATCATCTGTCATCAGAGGCATTTGCTTTGAAGTCTTTCAGAATGTTTTCACCTTCTTTGTGTCATCCTTTGAGGGAAAAGATATATTTCAGATTGTAGATAAAGAAGCTCTTAAAATTCAAGATTCTGCAGATGTTTTCACTGAGTTAAAGCAGAAATATACTGATGAAAATATTTTGCCTGTGATTAAACTATCCAAGTTACGTGCTATCAGTCTCCTCTGGCTATTTTTTCATTACCCTAAAAACTTAGCTGCAGCTTGTTTTGAGCTTTTCAATATGTCTGCTGAGGGAACTCACGAGGACCGGCAGTATTTTCTAAGTCAGATTATACTTGGGCTGGATGATGACATCACCCATCGTTTCGATAAAAGAAGTGACAACAAGACAAGCCCTAAATACTGCAAGGATGATGTTAAGGAGCAAGTTTCAGTCGGTAGCCACACCTCTGTTGATGCATCATCTGTTTCAAGGAACTGCATGTTGAGCTTGGTCCTTGGAAAGGATCAATCATTCCGAAACTGGATGATTACGCAGTATAAGAGGCTCTGTGACCTGCCATCCTTTAGAGCTTTAGCAGATGTAAGATCTGCTCTGGAAGGAATTTTTGAATCATTTTCCGAGCTAATGAACAACGAAGATAATCAAGTGAATATGGATGAGGAAATGTCTGATTCCTTGAAGCATTCTACTCGAAATAGATGTGAAATTTCCATGGAACTATCTGATAAAAGGAGAAAATTGAGGCATTGTGATTCCCTTGAAGATGGTGTCAATGAAAAAATTTCTGGTCAACATCGTTCGTCAATTCCTCTTGATGGTAAGCATACCACGTGTTCTGATTTTGATGCTGGCAGCTTGAGACCCATGGCCTTTGATGTTCAGGAGCCTGGAGGTTTGCTACATGGCAGTTTGCCCCAGTCGCAGGATCCTTTGAACAAGCACGATCATTTGTCTTATGCAAAAACATCATTAGACCTGCAGAACAATTCTTTTGAATGTACAAAGCATTCAATTGATGGCAATCAAGTTTCAAGTGTTGATCGCAACTTTCCTGCTCAGAGATTGTCTACTGGAGATATCAATAATGATCTTGTGCCTCCTAGACATCAGCTATCAGTGCCATGTAGTTCTACAACTTCTCAGAGTTTGTGGTTTTCTGATGGAGATCCATCAGCCATGGATATCTTCTCTGCTTCCAAACAACTATGGGTGGGTCTGTTAGGCCCTGAGACATCTGAAGCTCACATAAGGTATCAATTTGAGAGGTTTGGTTACATTGAACATTTTTTCTTCTTTCCATTAAAAAGGTTTGCAGTAGTGGAGTATGGTCACATCATTGATGCCATAAGGGCACGTGAATATATGCGTGGACAATTTCAATGGTGTGTAAAATTCATGGATATTGGTTTGGGAACTAGGGGTTCCGTCCACGGGGTTGCAATTGGTACCAGTTTTCATGTTTATGTTGGAAATGTTTTGAGCTACTGGGGGAAGGATGAGATTCTGCATGAGACAAGGAAAGTGCTTAACAAGGGTCCATACATGGTCTCTGATCTTGGCAACGAGGGTGCATTGCTGATGGAATTTGAGACTCCAGAAGAAGCTACACTTGTGATGGCACATCTCAGACAACATCGAAGGGAAAAGAATATTCACTGGCCTCCTCCAAATGCAGGGCAAACGAATATTGCACCGCCCTATTTAGATGGTGGAAGATCTGCTTGTGCCTCTACTGGTGGTAACATCAGAAGCAACAATCCTGCGAACATGCCCAATACTATGGTTGGGTCACCTCATGCTCCGATGGTCCCAGAGAGTCCTAACTTCAGGACAAGAATGTCAGAGCTATCTTCCTTACTTTATACACTGCGTGCAAAATACAATATCAATCAAAACTCAAGTTATTTTGAAAACTACATATCTGGAAGTTGCAATACTTCAATGAGGGAAGAAGACAGAACTCCTACTAGCACTCTCTGGATTTCTTTTCCAAATTTTAATTCTCCTTTTGTCACTGATGAGGAATTGATGAAGATCTGTAATCTTGCCATGACCAACACTGGGTCTGTTGTGAGGATGACTCGAGCAAGTGTACCGGTGGGCTGGGGTTGGTTTGTTGAGTGCAGTAGTGTAGATGCTGCAATAACCGTCTTGAAGAATCTCCGTGGTTGTCCTGGAATTTTTCTTCGAATAGAATTCAGTAAACCAGGAAGGTTCCATGCAGCACCTTTTCTGAGGCATGATAGTTGTGCTATGGATCATCCATCTCCCAGAATATTACATGAGAATCATGCAATGCCACCTCAACAAGGTGGATATTCCTATCAGTCAAACTGGGCTCCTTCCGGTGGTCATACAGAGATGCTTGAAATAGGGGTCGGAAAGACTGATGCTTGTGAAAAAAACCTGCTGATAGATCATCCACAAGGTGGCCACATAGTGTCTGGAACCATTCCATGCTTGCCCATATCAACAATGGGACCTCCCGCCCCACCACCTCCACCACAGATTCAGCCACCTCCATTTGTTCGATCTCCATACCCTCCTCCAAACAGTTCTTGGGATGCAAGGGGTTTAAACCATCCTTTGCCTTTACATCCAATATCACCAAGTGTTATACCTAATAATTTTCCGGGTAATTCTGTTGCATGCCCTCCCTTTTTACCTGCTTCTGTGACACCCCTTGCTCAGATACAAGGAACTACAATGCAGCAGCATCTAGACCATGTTTTTCCTCATCCTGTTGCGCCACCATCAATATCTCTACCATCTTCCCGGCCCGAGATGCATCCTCCCATGCCTTCATCTCCACCACCTTTGCCTCACTCACAACCGCCTAATATTCCTCCTCCACCTAGTTCTCCTCCGCCTCCACCTCCACCCCTAGCTGTCACAGGAACTAGTGAAGTGAAAAATTGTAGCCAGCATGTTCTATATCAATGGCAAGGAGCACTTTGTAAAAGTGGAGTTCAGTACTGTACAATTTATGCAAAAAGAGTGGATTCCCAAACTTGCAAATACTTAAATGCTGGTCCAGAACCTATTGAGTGGCCTGCAAAATTAGATATGACCAAACGCACAGATTTTAGGCATGTGAAGACAACATTCACCAGCACTTCACCAAGTAAAAGGGAGATATGTCAGCTGATCCCATCTTCTGGTGGAGACCATAAAGGATTTCAAGATTTTGTATCGTATTTGAAGCAGAGGGATTGCGCTGGAGTCATAAAAATACCGGCCACTAAATTGCTATGGACCAGGCTTCTCTTCATACTTCCATATTCACAGGACTCGTGTTCTCTGCTCTCAATTCCACCAGGCCCACCAGATAGCCTGATTGCCTTGGTTCTTCCTAAAGAAACAAACTTCGAATGGCGGGATCAACTTGAGGACTGTTCTGTTCAAGAATGTTCTTGTTCATGCAGTTCTCAAAGACTCAAGATTCGCTCGTCGGAGTCCAAAGTGGAATTCCAAACCCAAGTTCGGTTTGGCAGTCGGCAGCCACCAATTACAAAGCCAAAGAAAGGTATAAATTACAAAGCCAACCGATTCGTCTTCCTCTTCCTCCTCTCCACCCGGCGCTTTCTTCTTCCTATCCGATCACCAACGAAGTCATCTGAATTCAGAATGTCTAATCGTTACAATCACGATGGAAACAAGGGTTTAAGGAAAGACCAGAAGAAGTACATCCCCAAGAATCAAAATCAATCCACAAATGAACTCCCCAACCCTAAACTGACCCTTTCCACTTCTCTCAGACAATCGCTGCCTAAACCATCCAATTCTGCTGCTGTTACCACTTCTGCCGCGCCATCAATGAGTCGGATTCAGATGGGTGCGAATGGAGATTGGGTGTCTAGCAGAGCTAGTGGTGGCAATTTCGTGAATTACTTGCCACAGGACGAGGCCGTTGCCACTGGTCTTCGTGCCGAAGAAGGAGCATTGGATCCGGTGGAATCTCAAAGAGTCGTAGACCTTTTAAACAGAGAGTTGTCTAGGCTGCTCAAGTTGAGTGCTAAAGAGTTTTGGAGGGAAGTGGCTATGGATACTTCCTTGCTTGAATTTCTCGATAGCTTCCTAAAATTCAGGAGTAGATGGTATGATTTTCCACATCGTGGAGCAAATGGAATAGTTGCAGGGGTCATAGTTGGAGAATATGAATTAAGCCGCCGTGTTTTCATGGTATTATATCGCATGTCTTCCAATAGGGATCCTGGTGCACGAGCTGCTGATAGCCTCAGTTTGAAAGATCATGGAGTCCTTCTGCAGGGAAAGAAGTTGCTTGACCTTCCAAAGTTACTTGATATATGTGCTATATATGGTCATGAGAATGAAGATCTAACTAGAATACTGGTTGAGAATGCTATAAAATCCCAGCCTAGTATTCATGAAACTTTACCGTCAGTTATATCTCACTTCCTCAGCATTGCCTCTATGATGCATCAAAGGTGCAACTCATCTCTTGAGACTCTCTTCTCCTCGAGTAGCCATGGAGGAAGTGGGTACAGTAAGCTTCAAGCTGACTTCTTGGAGGTGATTGATTTTATCAACGATGCAATTGTCACTCTGGACTCTTTCGTCACTGCATACAGACTGGCAGCTATATTCTTCTCCTCTGCAGTTGAAATAAGCTGCGGGAATGAGGATTTGCTGGGAACTCTTGCAAGGTTGCATGATTTACTACTTCCATCTTTACAGCAGGGATTTCAAATTGTCCTTGTGCCCCAAGGAGATGAAATGATGTCTAATGTTGCAACAAGTTTGAAAATGCTAGCATTAAGAATTGTGAGTCTTGGTTGGAAACTGCTGGAAATCTGCTATCTAGGTGACGAAGTGTTCGGAAATGATCTCCCTGTTCCAGTCTCTATGAAGATGTTCCCTGCAACTGTCGAAGATCCTGTCATAAGAGCAGATATCTTGATTCAAACTTTACGAGAAATCAATGGAATCTCGCAACAGGCTTCAGATAAACAACTTGCTCAAACATTTCTTCAGCGTATGGAAAAGAACCACTCCATAATGAACAGAATCAACAGTTTACGAAACAATGGATGGATATTTGTTGATGATGAACAATTTGATTATCTATCAACAATTGTTATGTATACCCCCACGTCTGATATTAAGGATCCATCTCTTTCTAAGGCCCCTGTGATGAGCCACATATCAGAAGTAGATGAGGATGCTGCAATGTTGGAGTCGAAAATCTGCCAAATAAAGGATCTTTTCCCTGAGTATGGCAGTGGGTTTCTAGCTGCATGTCTGGTAGCTTATAATCAGAACCCTGAAGAAGTGATTCAACGAATACTTGAGGGAACTCTTCATTCTGATCTTCAGTCCTTGGACACTTCCTTAGAAACAATGCCGGTACCCAATTCTAGTGCGACTGCTAATAATAGGAACGACAAAGGAAAAGGAAAACTGTTTGAGTCTTCAACAGTTGATTACACTGACCAAGTTTCTCGTGGTAAAGATTTACTGTCTGAAGGCCCTTCAGTTTCATCACCTTCTGTTGGCAGATTTGTTCGAAAGTCTAAAGATGACATGCCGTACTCAGAGACCCTTGACAATAGAAATGAAGCAGATCCAGTGAGGACTGCAGCTTTAATTTCTCAATATGAGTATGAAGATGAGTATGATGACTCTTTTGATGATCTTGGTATTAGCATAGCAGAGACAGCTACAGAAGATAATGAAGACTTGGTAAAGCTAAGTTCCCATTTAGGCAGCTCATCGAACTCAACAAATGGAAGTTCAGCACAAAATGCTCCCAACTCAAAGTGGGGATCTAGAAGAAAACCACAATACTATGTCAAGGATGGTAAGAATTATAGTTACAAAGTTGCAGGGTCAGTTGCGGTTGCAAATTCTGATGAGGCATCGTTAGTAACTCAAGCTCAGAAAGAACTCATTTATGGACTTGGACACGGAGGCAACTTACCTCTCGGGGCAGTAAAAAAGCTGACAGAGTCTGAGCAGGATAGCCAACCTGATGTTTCTGAAGTAGATCCAAGAGATAATGTACGGAAGTCTTGGGGCAGAGGAAGGAGGGAAAGGGAAAGTGGAACAGTTGCAGGCATGCCTGAAAGGCAAGGTAAACAACCAATTGTGGCTGAGGTTTCAGAGAGGGGAGGAAGAGGCGGAAACCGAGGCCGTGGAAGGAGAGGAGGGGGCGACCATCACAGGAAGGATAGAGCCATGAAAAAGCATTTTGCTGGATTGTCTGGTTTCTAA 6783 43.49 MASAEQPLKKRRNYGPLAPEPPPLLHQLPQPPPPQIPVTDQTSAAPSPPTPPQLSQAEILLRRRNRDEIRSVYECFKRIRFFLSQKEKGAPTPDIEQAYLSLITASRGCTSVKRIVADFIPRYAPHCPTALEAATKVIINMHNQSLEIINNGEDVDNVAFETASACIIGLIDICAAVISKAHTSSVIRGICFEVFQNVFTFFVSSFEGKDIFQIVDKEALKIQDSADVFTELKQKYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEGTHEDRQYFLSQIILGLDDDITHRFDKRSDNKTSPKYCKDDVKEQVSVGSHTSVDASSVSRNCMLSLVLGKDQSFRNWMITQYKRLCDLPSFRALADVRSALEGIFESFSELMNNEDNQVNMDEEMSDSLKHSTRNRCEISMELSDKRRKLRHCDSLEDGVNEKISGQHRSSIPLDGKHTTCSDFDAGSLRPMAFDVQEPGGLLHGSLPQSQDPLNKHDHLSYAKTSLDLQNNSFECTKHSIDGNQVSSVDRNFPAQRLSTGDINNDLVPPRHQLSVPCSSTTSQSLWFSDGDPSAMDIFSASKQLWVGLLGPETSEAHIRYQFERFGYIEHFFFFPLKRFAVVEYGHIIDAIRAREYMRGQFQWCVKFMDIGLGTRGSVHGVAIGTSFHVYVGNVLSYWGKDEILHETRKVLNKGPYMVSDLGNEGALLMEFETPEEATLVMAHLRQHRREKNIHWPPPNAGQTNIAPPYLDGGRSACASTGGNIRSNNPANMPNTMVGSPHAPMVPESPNFRTRMSELSSLLYTLRAKYNINQNSSYFENYISGSCNTSMREEDRTPTSTLWISFPNFNSPFVTDEELMKICNLAMTNTGSVVRMTRASVPVGWGWFVECSSVDAAITVLKNLRGCPGIFLRIEFSKPGRFHAAPFLRHDSCAMDHPSPRILHENHAMPPQQGGYSYQSNWAPSGGHTEMLEIGVGKTDACEKNLLIDHPQGGHIVSGTIPCLPISTMGPPAPPPPPQIQPPPFVRSPYPPPNSSWDARGLNHPLPLHPISPSVIPNNFPGNSVACPPFLPASVTPLAQIQGTTMQQHLDHVFPHPVAPPSISLPSSRPEMHPPMPSSPPPLPHSQPPNIPPPPSSPPPPPPPLAVTGTSEVKNCSQHVLYQWQGALCKSGVQYCTIYAKRVDSQTCKYLNAGPEPIEWPAKLDMTKRTDFRHVKTTFTSTSPSKREICQLIPSSGGDHKGFQDFVSYLKQRDCAGVIKIPATKLLWTRLLFILPYSQDSCSLLSIPPGPPDSLIALVLPKETNFEWRDQLEDCSVQECSCSCSSQRLKIRSSESKVEFQTQVRFGSRQPPITKPKKGINYKANRFVFLFLLSTRRFLLPIRSPTKSSEFRMSNRYNHDGNKGLRKDQKKYIPKNQNQSTNELPNPKLTLSTSLRQSLPKPSNSAAVTTSAAPSMSRIQMGANGDWVSSRASGGNFVNYLPQDEAVATGLRAEEGALDPVESQRVVDLLNRELSRLLKLSAKEFWREVAMDTSLLEFLDSFLKFRSRWYDFPHRGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHGVLLQGKKLLDLPKLLDICAIYGHENEDLTRILVENAIKSQPSIHETLPSVISHFLSIASMMHQRCNSSLETLFSSSSHGGSGYSKLQADFLEVIDFINDAIVTLDSFVTAYRLAAIFFSSAVEISCGNEDLLGTLARLHDLLLPSLQQGFQIVLVPQGDEMMSNVATSLKMLALRIVSLGWKLLEICYLGDEVFGNDLPVPVSMKMFPATVEDPVIRADILIQTLREINGISQQASDKQLAQTFLQRMEKNHSIMNRINSLRNNGWIFVDDEQFDYLSTIVMYTPTSDIKDPSLSKAPVMSHISEVDEDAAMLESKICQIKDLFPEYGSGFLAACLVAYNQNPEEVIQRILEGTLHSDLQSLDTSLETMPVPNSSATANNRNDKGKGKLFESSTVDYTDQVSRGKDLLSEGPSVSSPSVGRFVRKSKDDMPYSETLDNRNEADPVRTAALISQYEYEDEYDDSFDDLGISIAETATEDNEDLVKLSSHLGSSSNSTNGSSAQNAPNSKWGSRRKPQYYVKDGKNYSYKVAGSVAVANSDEASLVTQAQKELIYGLGHGGNLPLGAVKKLTESEQDSQPDVSEVDPRDNVRKSWGRGRRERESGTVAGMPERQGKQPIVAEVSERGGRGGNRGRGRRGGGDHHRKDRAMKKHFAGLSGF 2260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31740848 31757393 + CcPI632755_05g023160.1 Cco05g2316 179944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2316 2260 MobiDBLite consensus disorder prediction 2174 2207 - -
Cco05g2316 2260 MobiDBLite consensus disorder prediction 2089 2112 - -
Cco05g2316 2260 MobiDBLite consensus disorder prediction 2172 2260 - -
Cco05g2316 2260 Pfam SPOC domain 1162 1300 IPR012921 -
Cco05g2316 2260 SUPERFAMILY UBA-like 1914 1972 IPR009060 GO:0005515(InterPro)
Cco05g2316 2260 MobiDBLite consensus disorder prediction 16 53 - -
Cco05g2316 2260 Pfam CUE domain 1918 1956 IPR003892 GO:0043130(InterPro)
Cco05g2316 2260 CDD SPOC_FPA-like 1163 1301 - -
Cco05g2316 2260 ProSiteProfiles CUE domain profile. 1914 1957 IPR003892 GO:0043130(InterPro)
Cco05g2316 2260 Gene3D - 574 656 IPR012677 -
Cco05g2316 2260 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1392 2260 IPR052586 GO:0043130(PANTHER)
Cco05g2316 2260 MobiDBLite consensus disorder prediction 1093 1150 - -
Cco05g2316 2260 MobiDBLite consensus disorder prediction 2024 2043 - -
Cco05g2316 2260 MobiDBLite consensus disorder prediction 1099 1147 - -
Cco05g2316 2260 Gene3D - 1913 1957 - -
Cco05g2316 2260 SMART cue_7 1914 1956 IPR003892 GO:0043130(InterPro)
Cco05g2316 2260 MobiDBLite consensus disorder prediction 2003 2043 - -
Cco05g2316 2260 MobiDBLite consensus disorder prediction 2089 2116 - -
Cco05g2316 2260 MobiDBLite consensus disorder prediction 1434 1454 - -
Cco05g2316 2260 CDD CUE_ASCC2 1916 1955 IPR041800 -
Cco05g2316 2260 CDD RRM_SF 585 642 - -
Cco05g2316 2260 MobiDBLite consensus disorder prediction 1 55 - -
Cco05g2316 2260 SUPERFAMILY RNA-binding domain, RBD 569 642 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2316 K18667 - - csv:101209442 2284.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1073 Cco-Chr2:14362447 Cco05g2316 Cco-Chr5:31740848 7.90E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g657 . Blo12g00984 . Bda03g00185 . Bpe04g00160 . . . . Cma01g01790 Cma09g00286 . . . Cpe06g00196 . . . . . . . . . . . . . . . Cone4ag1611 Cone7ag1341 . . . Csa04g02474 . . . . . . . . . . . Cmo01g01848 Cmo09g00277 . . . Car09g00240 . Cpe02g00217 Bhi09g03233 Tan01g4699 . . . Mch11g0359 . Cla05g02103 Cam05g2255 Cec05g2275 Cco05g2316 Clacu05g2251 Cmu05g2114 Cre05g2238 . . Chy07g00186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59