Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2324 ATGGCTTTTGCAGGAACCACCCAGAAATGCATGGCCTGCGACAAAACTGTCTATTTAGTCGACAAGCTCACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGTCACCACTGCAATGGAACCCTTAAGCTAAGCAATTACAATTCGTTTGAAGGGGTGCTTTATTGTCGGCCACACTTCGATCAGCTCTTTAAAAGAACTGGAAGCTTAGACAAAAGCTTTGAAGGAACACCAAAGATTGGGAAACCGGAGAAACCGGCTGATTCTGAGAAACCAACAGCGACTAAGGTTGCAAGCATGTTCATCGGTACTAAAGACAAGTGCCTTGGCTGTAAGAACACTGTTTATCCAACTGAGAAGGTTTCAGTGAATGGAACTTCATACCATAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATTGCACATGAAGGTCGACTTTACTGCAAACACCACCATACCCAACTCATCAAAGAAAAAGGAAACTTGAGCCAGCTGGAAGGAAGCCATTAA 540 44.81 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31809288 31810224 + CcPI632755_05g023240.1 Cco05g2324 179952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2324 179 Gene3D Cysteine Rich Protein 4 74 - -
Cco05g2324 179 Gene3D Cysteine Rich Protein 104 174 - -
Cco05g2324 179 CDD LIM1_SF3 6 68 - -
Cco05g2324 179 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Cco05g2324 179 CDD LIM2_SF3 110 170 - -
Cco05g2324 179 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Cco05g2324 179 FunFam LIM domain and actin-binding 1 4 74 - -
Cco05g2324 179 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Cco05g2324 179 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Cco05g2324 179 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Cco05g2324 179 PANTHER OS06G0237300 PROTEIN 2 179 - GO:0005886(PANTHER)|GO:0015629(PANTHER)|GO:0051015(PANTHER)|GO:0051017(PANTHER)
Cco05g2324 179 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Cco05g2324 179 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Cco05g2324 179 FunFam LIM domain and actin-binding 1 104 174 - -
Cco05g2324 179 SMART lim_4 109 161 IPR001781 -
Cco05g2324 179 SMART lim_4 9 61 IPR001781 -
Cco05g2324 179 Pfam LIM domain 10 65 IPR001781 -
Cco05g2324 179 Pfam LIM domain 110 164 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2324 K09377 - - csv:101222637 383.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0757 Cco-Chr2:7940032 Cco05g2324 Cco-Chr5:31809288 1.10E-84 dispersed
Cco05g2324 Cco-Chr5:31809288 Cco11g0648 Cco-Chr11:7072916 4.00E-57 dispersed
Cco06g1881 Cco-Chr6:29011446 Cco05g2324 Cco-Chr5:31809288 6.90E-76 transposed
Cco05g2324 Cco-Chr5:31809288 Cco08g1838 Cco-Chr8:29373268 3.00E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g643 . . . . . . . . Cmo05g00138 Cmo12g00541 Cma01g01782 Cma09g00294 Car01g01390 Car12g00545 Sed05g2633 Cpe06g00204 . Bhi04g00436 Tan02g1031 Cmetu01g2030 . Hepe08g1339 . Lcy13g2137 Cla08g01627 Cam08g2131 Cec08g1716 Cco08g1838 Clacu08g1817 . Cre08g1600 . . Cone17ag0889 Cone20ag0235 Lsi04g01478 Csa04g02483 . Cme03g02108 . . . Bda01g01625 . . . . Sed01g2723 Cmo01g01840 Cmo09g00287 Cma12g00601 Cma05g00134 Car05g00115 Car09g00248 Cpe11g00115 Cpe02g00224 Bhi09g03223 Tan01g4685 Cmetu07g1130 . Hepe01g1834 Mch11g0367 . Cla05g02110 Cam05g2262 Cec05g2283 Cco05g2324 Clacu05g2259 Cmu05g2121 Cre05g2245 Lsi08g01532 Csa02g01888 Chy07g00193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59362 PF00412 LIM 2.10E-11 CL0167 Cco TF