Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2329 ATGGCCATTCTTGTTTTCCGCTTCTCTATTCTCTCCGTTCTTCTTTTTCAAGTCCTCTCCGCCAACTCTTCGTGGACGGTGAAGTTTCTTCCTGGATTTTCAGGTCCTCTTCCTTTCGTACTCGAAACTGGATACGTGGGAGTTGGGGAAAATGAGGAAGTCCAATTGTTTTACTATTTTGTAAAATCAGAAGGAAATCCTGAAAAAGATCCTCTCGTTTTGTGGCACACCGGCGGCCCCGGTTGCTCCGGTTTATCTGGACTCGCATTTGAAATTGGTCCTCTTAATTTCAAGGAACAGCAGTACAGTGGGAGTCTACCTCAACTAATTTTGAACCCCTTTTCATGGACCAAGAACTGTAGTATAATCTTTCTAGATTTGCCCGTCGGTACTGGATTTTCGTATGCTAAAACTCCCCAAGCTCTGCAGACGGGAGATTTTGGTCAAGTTCAAACTTCTCATCAATTTTTGAGGAAGTGGTTGATCGAGTATCATCCAGAATTTATATCTAATCCATTCTATGTTGGTGGAGACTCATATTCTGGTCTTATTGTTCCCGTTGTTACTCATGAAATATTAGAAGGAAATAAACGTGTTTTGCCATTAGTAAATCTTCAGGGATACATATTGGGAAATCCTATCACTATCCGTAATTCACATAAAAATTTTGCAATCCCTTTTGCTCATAGAATGACACTCATCTCTGATGAATTATTCGAGTCTTTGACGACTAGTTGCAATGGAGAGTATGTGAACATTGATCCTACTAATGTTGAGTGCTTGAGACATTATGATACCTACGAAAAGAGTGTTTCAAAAATTTACAATGGGAATATTTTGTTGCCAAAATGTCCCTCGGCTTCTTGGAAATTACAAGATATGTCTGCTCGAAGATCTCTCTACAAAACTCCCAAAGTACTCCATGATCTAAAGCTACCACTTCCAACTCTTGGCTGTCCTACGTATAAATACTTACTTTCTCACTACTGGGCTAATGATAATCAAGTTCGAAAAGCGCTTCACATTCAAGAGAGAAGCATTGGAGAATGGATAAGATGTCAGTATAGAGATGATTACAGTTTTGATATTGACAGTTCATTTCCTTATCATGTGAACCTCAGCTCTAAAAGTTATCGATCTTTAATCTATAGTGGAGATCACGATATGGTGGTGTCTCATTTAGACACTCAAGCATGGATTAAATCTTTAAATTATTCTATTGTTGATGACTGGAGGCCATGGTTCATCATGGATCAAGTAGCGGGATACACGAGAACCTTTGCAAATAAGATGACATTTGCAACAATAAAGTTGGGAACAATGATTGAATTTTATCGGAATTCTTCAATTGAATGGAAGCCCTCTCCTGTCGTAGCGCTAGCCTCCAGTGCCGATGACTCTCAGGTTGCGGCTGCCCGAGAAGACGGCTCGCTTGAGATATGGCTGGTTTCTCCTGGTTCGGTCGGGTGGCACTGTCAGTTGACGATTAGTGGAGACCCTACTTCTAGGGTTTCATCACTTGTCTGGTGCTCTGCTGGTTCAAAAGATAAGCCTTCTGGTCGCTTATTTTCGTCCAGCATTGATGGTTCAATTTCGGAGTGGGATTTGTTTGATTTAACGCAGAAGTCTGTTTTAGAATCAATTGGTGTCTCCATCTGGCAAATTGCTGCAGCACCCTGTAGTAGTCGTGAGGTTCACAGGGAGGAGGTAAAGCCCCAAGACATTGAAAACGGGCATGTAACTGACAACGAGAGTGATTGCCAAGATTGTAGTGAGAGCGAAGATGATTCCAGTTCATCTGGGCTTCATGTCCAATCTAGTGATGAGAATCCCTCCTCTCTAGCAATTGCTTGTGATGATGGTTGTGTGCGTATTTACAATATATGTGATGCAGAAGAGTTTATTTACAAAAGATCGTTGCCTAGGGTCAGTGGTAGGATTTTAAGTGTAACATGGAGTAATGATGCAGAGCGGATATTTTCAGGGAGCAGTGATGGGTTTATTCGATGCTGGAATGCTAGTCTTGGGCATGAGATCTATAGGATTACTGCAGGACTTGGAGGTTTGGGCAGTGGACCAGAACTTTGTGTATGGTCATTGCTTCCCCTTAGGTGTGGTACCCTTGTCAGTGCAGATAGTACTGGTAGTGTCCAATTTTGGGACAGTAATCATGGAACTCTTTTGCAAGCGCACACCCTACACAAGGGTGATGTGAATGCACTTGCAGTTACTCCTAATCACAATCGAGTATATTCTGCTGGCTCGGATGGTCAGGTTATTCTCTACAAGCTCTCTAACGAGAATGTTGCGTGTAGTGAAGACAAGTGTTCTTCTAAAATGACGAAGAAATGGATTTATGTTGGTCATGTGAGGGCTCATACTCATGATATCAGGGCTTTGACTGTTGCAGTACCAATTTGTCGAGAAGAGCCATCACAGGATGAAGAGGTGAAAAGAATCCGTTATAAGAAGAAGCCTAATGATTTTAGTTATCGTAAGTGGGCCCATCTGGGAGTTCCAATGCTAATGTCTGGTGGTGATGATACAAAGCTGTTTGCATACTCTGCTCAGGAATTTACCAAATTTTCTCCCCATGATATATGTCCTGCGCCACAAAGGGTGCCTATGCAACTTGTACTTAATACAGTTTTCAACCAAGCACCGTTGTTACTTGTTCAGGCTTCTCACTCTCTGGACATCCTGTGTATTCGCCCAAAAAGTGGCTCCTTTGGAGATAAGGCTTGTGGACCTTCTAAGGGACATACAAAGGCAGATTTATTGGTTCGAGTTAAGAGCAAGGCATCTCGAAAGATTATCTGCAGTACTATTTCCAACTCCGGAAAGCTATTTGCATATTCTGATCATACCAAACCCAACTTATTTGAATTGAAGAAATCTGGAGGAAGCAAATGTTCGTGGACTGTTGTTAGAAGGAAACTTCCAAATATGCTACCATTTGCCCATTCTATGGTCTTCAGTTTTGATTCTTCTCGATTAATCATAGCAGGACATGATAAAAGGATATATGTTGTGGATGTGGGTAGTTTGGAAGTCTTACATAGTTTTACGCCTTTCCGGGAGCTGCAGAATGCTACATTACCACCTGCCGAACCTCCTATAACGAAAATATTTACAAGTTCAGATGGGCAGTGGTTAGCTGCAGTTAACTGCTTTGGAGATGTATACGTATTCAATATGGAGATTATGAGGCAACACTGGTTCATTTCAAGACTAGATGGTGCCTCAATTACGGCTGGAGGCTTTCCTCAATGGAACAACAATGTGCTCGTAGTCACTACTTCTTCAAACCAGGTTTATGCCTTTGATGTTGAGGCCAAACAATTAGGAGACTGGTCAATGCGGCATACACAAGCTCTCCCAAAGAGATTCCAAGAATTTCCTGGGGAGGTTATTGGTCTCTCTTTCCCACCATCTGCCACCTCTTTGCCTGTTATCGTGTATAGTTCCAGGGCAATGTGCTTGATTGACTTTAGGATGTCGGTGGACCAAGATGATGAATATGTCATGATCAGTGGACAAGATTCAACGGTGAAGAGTCTATGGGGTACTCCAATAAATGGGAAATTGAAACGTAAGTTAAGAGACTGCCAAACAGAGGGTAGACCACATGGTAGAAAGAATTTTGAAATTTTTCCTTTTAGAGATCCTGTTTTACTTATTGGACATCTCTCCAAAACTTCACTCTTGATTATAGAAAAACCATGGTTAGAAGTGGCAAACACTTTCGATGCCCCACCTGTGCACAGACATATATATGGGACTTAA 3786 41.76 MAILVFRFSILSVLLFQVLSANSSWTVKFLPGFSGPLPFVLETGYVGVGENEEVQLFYYFVKSEGNPEKDPLVLWHTGGPGCSGLSGLAFEIGPLNFKEQQYSGSLPQLILNPFSWTKNCSIIFLDLPVGTGFSYAKTPQALQTGDFGQVQTSHQFLRKWLIEYHPEFISNPFYVGGDSYSGLIVPVVTHEILEGNKRVLPLVNLQGYILGNPITIRNSHKNFAIPFAHRMTLISDELFESLTTSCNGEYVNIDPTNVECLRHYDTYEKSVSKIYNGNILLPKCPSASWKLQDMSARRSLYKTPKVLHDLKLPLPTLGCPTYKYLLSHYWANDNQVRKALHIQERSIGEWIRCQYRDDYSFDIDSSFPYHVNLSSKSYRSLIYSGDHDMVVSHLDTQAWIKSLNYSIVDDWRPWFIMDQVAGYTRTFANKMTFATIKLGTMIEFYRNSSIEWKPSPVVALASSADDSQVAAAREDGSLEIWLVSPGSVGWHCQLTISGDPTSRVSSLVWCSAGSKDKPSGRLFSSSIDGSISEWDLFDLTQKSVLESIGVSIWQIAAAPCSSREVHREEVKPQDIENGHVTDNESDCQDCSESEDDSSSSGLHVQSSDENPSSLAIACDDGCVRIYNICDAEEFIYKRSLPRVSGRILSVTWSNDAERIFSGSSDGFIRCWNASLGHEIYRITAGLGGLGSGPELCVWSLLPLRCGTLVSADSTGSVQFWDSNHGTLLQAHTLHKGDVNALAVTPNHNRVYSAGSDGQVILYKLSNENVACSEDKCSSKMTKKWIYVGHVRAHTHDIRALTVAVPICREEPSQDEEVKRIRYKKKPNDFSYRKWAHLGVPMLMSGGDDTKLFAYSAQEFTKFSPHDICPAPQRVPMQLVLNTVFNQAPLLLVQASHSLDILCIRPKSGSFGDKACGPSKGHTKADLLVRVKSKASRKIICSTISNSGKLFAYSDHTKPNLFELKKSGGSKCSWTVVRRKLPNMLPFAHSMVFSFDSSRLIIAGHDKRIYVVDVGSLEVLHSFTPFRELQNATLPPAEPPITKIFTSSDGQWLAAVNCFGDVYVFNMEIMRQHWFISRLDGASITAGGFPQWNNNVLVVTTSSNQVYAFDVEAKQLGDWSMRHTQALPKRFQEFPGEVIGLSFPPSATSLPVIVYSSRAMCLIDFRMSVDQDDEYVMISGQDSTVKSLWGTPINGKLKRKLRDCQTEGRPHGRKNFEIFPFRDPVLLIGHLSKTSLLIIEKPWLEVANTFDAPPVHRHIYGT 1261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31823233 31835760 - CcPI632755_05g023290.1 Cco05g2329 179957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2329 1261 SUPERFAMILY alpha/beta-Hydrolases 27 437 IPR029058 -
Cco05g2329 1261 SUPERFAMILY Tricorn protease domain 2 935 1184 - -
Cco05g2329 1261 ProSiteProfiles Trp-Asp (WD) repeats profile. 731 772 IPR001680 GO:0005515(InterPro)
Cco05g2329 1261 Pfam WD domain, G-beta repeat 645 672 IPR001680 GO:0005515(InterPro)
Cco05g2329 1261 Pfam WD domain, G-beta repeat 728 762 IPR001680 GO:0005515(InterPro)
Cco05g2329 1261 MobiDBLite consensus disorder prediction 566 611 - -
Cco05g2329 1261 SUPERFAMILY WD40 repeat-like 455 1022 IPR036322 GO:0005515(InterPro)
Cco05g2329 1261 Gene3D - 319 447 - -
Cco05g2329 1261 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 441 1261 IPR044622 GO:0010073(InterPro)|GO:0035266(InterPro)
Cco05g2329 1261 SMART WD40_4 724 763 IPR001680 GO:0005515(InterPro)
Cco05g2329 1261 SMART WD40_4 977 1012 IPR001680 GO:0005515(InterPro)
Cco05g2329 1261 SMART WD40_4 538 627 IPR001680 GO:0005515(InterPro)
Cco05g2329 1261 SMART WD40_4 633 672 IPR001680 GO:0005515(InterPro)
Cco05g2329 1261 SMART WD40_4 683 721 IPR001680 GO:0005515(InterPro)
Cco05g2329 1261 SMART WD40_4 443 482 IPR001680 GO:0005515(InterPro)
Cco05g2329 1261 SMART WD40_4 489 535 IPR001680 GO:0005515(InterPro)
Cco05g2329 1261 Gene3D alpha/beta hydrolase 20 294 IPR029058 -
Cco05g2329 1261 Pfam Serine carboxypeptidase 31 437 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2329 1261 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2329 1261 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2329 1261 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2329 1261 Gene3D - 448 565 IPR015943 GO:0005515(InterPro)
Cco05g2329 1261 ProSiteProfiles Trp-Asp (WD) repeats profile. 640 681 IPR001680 GO:0005515(InterPro)
Cco05g2329 1261 Gene3D - 596 869 IPR015943 GO:0005515(InterPro)
Cco05g2329 1261 MobiDBLite consensus disorder prediction 566 586 - -
Cco05g2329 1261 FunFam Serine carboxypeptidase-like 19 20 290 - -
Cco05g2329 1261 Gene3D - 879 1217 IPR015943 GO:0005515(InterPro)
Cco05g2329 1261 MobiDBLite consensus disorder prediction 594 611 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2329 Cco-Chr5:31823233 Cco05g2331 Cco-Chr5:31857529 1.40E-188 dispersed
Cco05g2329 Cco-Chr5:31823233 Cco05g2330 Cco-Chr5:31840864 6.10E-168 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2329 K14548 - csv:101222880 1524.99