Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2330 | ATGATCCTCCTCCGCCTCTCTGTTTTCGCTGTTGTTCTTTTTCAGATATCCTCCGCCGTGGGCGCCGGCACAAGGTCTTACTGGACGGTGAAGTCCTTGCCGGGATTGTCGGGGCCTCTGCCTTTCGAGCTGGAAACAGGATACGTAGGAGTGGGAAATTCGGAGGAATTTCAGCTGTTTTATTATTTTATCAAATCTTATGGAAATCCCAAAACGGATCCTCTCATTTTGTGGCTCACTGGAGGCCCCCGTTGCTCTACTCTCTCTGGAATTGCCTTTGAAAGTGGTCCAATAAATTTTGAGGGAGAACCTAAAAATGGGAGCATTCCTCAAATAATCTTGAACCCTTATTCATGGACCAAGAAATCCAGTATAATATATATAGACTTACCGGTTGGCACGGGTTTTTCATATGCTAAAACTTCAAAAGATCATAAATCAGGAGATTACGAACAAGTTTACCATTCCCTTCAATTTTTGAGAAAGTGGTGGGTCGATCATCCAGAATTTATATCAAATCCATTCTATGTTGCTGGAGATTCTTACGCTGGTATGATTGTTCCAGTTGTTGTTAAAGAAATTTTAGAAGAAAATCATAAACATATTGTTCCATTCATAAATTTTCAGGGATACATATTGGGAAATCCTATCACTACTCCTCATTCAAATAAAAATTTTGAAATCCCATTTGCTCATAACATGGCCCTCATCTCGGATGAATTGTTTGAGTCGTTGAAAACTAGTTGTCAAGGAGAATACGTGAACATCGATCCAAACAATGTGGAGTGCTTAAGATATCATGATATGTTTAAAAAGTGCACTTCTACCGTTCTAGATGGATGTATTTTATGGCCCAAATGTTCATCTTTGAAAGAACCAGATGTGTCTGAACCAAATATGTCTGGTACTCATAGATCTCTCTACAGCGTTCCTGTTGATCGTAGATGTCGTGTGTATGACTACCTTCTTGCTTACTATTGGGCTAACAATGACCAAGTTCGAAAAGCACTTCATATACATGAGGGAAGCATTGGAGAATGGATTAGATGTCGTGACAGACATCATTACAATGTTGAGCTTGATAGTGTTTTTCCTTATCACGTGAACCTTAGTTCTAAAGGTTATCGATCACTAGTCTATAGCGGAGACCATGATATGATAGTATCGCATATGGACACTCAAGCATGGATCAAATCTCTAAATTATTCTATAGTAGATGATTGGAGACCATGGTACATCGAGGATGAAGTTGCCGGATACACGAGAAGTTTTGCAAATAAGATGACATTTGCAACTATAAAAGGTGGAGGACATACAGCAGAATATAAGCGTAGAGAATGCAGCATATTATTTAATAGATGGATAGTGGGAGAATCCTTATAA | 1383 | 39.12 | MILLRLSVFAVVLFQISSAVGAGTRSYWTVKSLPGLSGPLPFELETGYVGVGNSEEFQLFYYFIKSYGNPKTDPLILWLTGGPRCSTLSGIAFESGPINFEGEPKNGSIPQIILNPYSWTKKSSIIYIDLPVGTGFSYAKTSKDHKSGDYEQVYHSLQFLRKWWVDHPEFISNPFYVAGDSYAGMIVPVVVKEILEENHKHIVPFINFQGYILGNPITTPHSNKNFEIPFAHNMALISDELFESLKTSCQGEYVNIDPNNVECLRYHDMFKKCTSTVLDGCILWPKCSSLKEPDVSEPNMSGTHRSLYSVPVDRRCRVYDYLLAYYWANNDQVRKALHIHEGSIGEWIRCRDRHHYNVELDSVFPYHVNLSSKGYRSLVYSGDHDMIVSHMDTQAWIKSLNYSIVDDWRPWYIEDEVAGYTRSFANKMTFATIKGGGHTAEYKRRECSILFNRWIVGESL | 460 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31840864 | 31846298 | - | CcPI632755_05g023300.1 | Cco05g2330 | 179958 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2330 | 460 | Pfam | Serine carboxypeptidase | 34 | 456 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco05g2330 | 460 | PANTHER | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | 29 | 454 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER) | |
Cco05g2330 | 460 | FunFam | Serine carboxypeptidase-like 11 | 24 | 460 | - | - | |
Cco05g2330 | 460 | FunFam | Carboxypeptidase | 315 | 459 | - | - | |
Cco05g2330 | 460 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 128 | 138 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco05g2330 | 460 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 163 | 188 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco05g2330 | 460 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 115 | 127 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco05g2330 | 460 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 428 | 441 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco05g2330 | 460 | Gene3D | alpha/beta hydrolase | 33 | 460 | IPR029058 | - | |
Cco05g2330 | 460 | SUPERFAMILY | alpha/beta-Hydrolases | 29 | 457 | IPR029058 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2330 | Cco-Chr5:31840864 | Cco05g2932 | Cco-Chr5:36810265 | 5.00E-184 | dispersed | |
Cco05g2330 | Cco-Chr5:31840864 | Cco05g2332 | Cco-Chr5:31867585 | 1.30E-06 | proximal | |
Cco05g2329 | Cco-Chr5:31823233 | Cco05g2330 | Cco-Chr5:31840864 | 6.10E-168 | tandem | |
Cco05g2330 | Cco-Chr5:31840864 | Cco05g2331 | Cco-Chr5:31857529 | 3.80E-184 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2330 | K16296 | - | csv:101207623 | 720.309 |