Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2330 ATGATCCTCCTCCGCCTCTCTGTTTTCGCTGTTGTTCTTTTTCAGATATCCTCCGCCGTGGGCGCCGGCACAAGGTCTTACTGGACGGTGAAGTCCTTGCCGGGATTGTCGGGGCCTCTGCCTTTCGAGCTGGAAACAGGATACGTAGGAGTGGGAAATTCGGAGGAATTTCAGCTGTTTTATTATTTTATCAAATCTTATGGAAATCCCAAAACGGATCCTCTCATTTTGTGGCTCACTGGAGGCCCCCGTTGCTCTACTCTCTCTGGAATTGCCTTTGAAAGTGGTCCAATAAATTTTGAGGGAGAACCTAAAAATGGGAGCATTCCTCAAATAATCTTGAACCCTTATTCATGGACCAAGAAATCCAGTATAATATATATAGACTTACCGGTTGGCACGGGTTTTTCATATGCTAAAACTTCAAAAGATCATAAATCAGGAGATTACGAACAAGTTTACCATTCCCTTCAATTTTTGAGAAAGTGGTGGGTCGATCATCCAGAATTTATATCAAATCCATTCTATGTTGCTGGAGATTCTTACGCTGGTATGATTGTTCCAGTTGTTGTTAAAGAAATTTTAGAAGAAAATCATAAACATATTGTTCCATTCATAAATTTTCAGGGATACATATTGGGAAATCCTATCACTACTCCTCATTCAAATAAAAATTTTGAAATCCCATTTGCTCATAACATGGCCCTCATCTCGGATGAATTGTTTGAGTCGTTGAAAACTAGTTGTCAAGGAGAATACGTGAACATCGATCCAAACAATGTGGAGTGCTTAAGATATCATGATATGTTTAAAAAGTGCACTTCTACCGTTCTAGATGGATGTATTTTATGGCCCAAATGTTCATCTTTGAAAGAACCAGATGTGTCTGAACCAAATATGTCTGGTACTCATAGATCTCTCTACAGCGTTCCTGTTGATCGTAGATGTCGTGTGTATGACTACCTTCTTGCTTACTATTGGGCTAACAATGACCAAGTTCGAAAAGCACTTCATATACATGAGGGAAGCATTGGAGAATGGATTAGATGTCGTGACAGACATCATTACAATGTTGAGCTTGATAGTGTTTTTCCTTATCACGTGAACCTTAGTTCTAAAGGTTATCGATCACTAGTCTATAGCGGAGACCATGATATGATAGTATCGCATATGGACACTCAAGCATGGATCAAATCTCTAAATTATTCTATAGTAGATGATTGGAGACCATGGTACATCGAGGATGAAGTTGCCGGATACACGAGAAGTTTTGCAAATAAGATGACATTTGCAACTATAAAAGGTGGAGGACATACAGCAGAATATAAGCGTAGAGAATGCAGCATATTATTTAATAGATGGATAGTGGGAGAATCCTTATAA 1383 39.12 MILLRLSVFAVVLFQISSAVGAGTRSYWTVKSLPGLSGPLPFELETGYVGVGNSEEFQLFYYFIKSYGNPKTDPLILWLTGGPRCSTLSGIAFESGPINFEGEPKNGSIPQIILNPYSWTKKSSIIYIDLPVGTGFSYAKTSKDHKSGDYEQVYHSLQFLRKWWVDHPEFISNPFYVAGDSYAGMIVPVVVKEILEENHKHIVPFINFQGYILGNPITTPHSNKNFEIPFAHNMALISDELFESLKTSCQGEYVNIDPNNVECLRYHDMFKKCTSTVLDGCILWPKCSSLKEPDVSEPNMSGTHRSLYSVPVDRRCRVYDYLLAYYWANNDQVRKALHIHEGSIGEWIRCRDRHHYNVELDSVFPYHVNLSSKGYRSLVYSGDHDMIVSHMDTQAWIKSLNYSIVDDWRPWYIEDEVAGYTRSFANKMTFATIKGGGHTAEYKRRECSILFNRWIVGESL 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31840864 31846298 - CcPI632755_05g023300.1 Cco05g2330 179958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2330 460 Pfam Serine carboxypeptidase 34 456 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2330 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 454 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cco05g2330 460 FunFam Serine carboxypeptidase-like 11 24 460 - -
Cco05g2330 460 FunFam Carboxypeptidase 315 459 - -
Cco05g2330 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2330 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2330 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2330 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2330 460 Gene3D alpha/beta hydrolase 33 460 IPR029058 -
Cco05g2330 460 SUPERFAMILY alpha/beta-Hydrolases 29 457 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2330 Cco-Chr5:31840864 Cco05g2932 Cco-Chr5:36810265 5.00E-184 dispersed
Cco05g2330 Cco-Chr5:31840864 Cco05g2332 Cco-Chr5:31867585 1.30E-06 proximal
Cco05g2329 Cco-Chr5:31823233 Cco05g2330 Cco-Chr5:31840864 6.10E-168 tandem
Cco05g2330 Cco-Chr5:31840864 Cco05g2331 Cco-Chr5:31857529 3.80E-184 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2330 K16296 - csv:101207623 720.309