Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2331 | ATGCCCACCGCCGTCTTCCGCGTCTCTGTTCTGTTCGTCTCTGTTTTTCAAATCATCTCCGCCGCAGGGTCGTCGCGCTGGACGGTGGAGTATCTGCCGGGATTTGCAGGCCGTCTCCCATTCGAACTGGAAACAGGATATGTGGGTGTTGGGGATTTGGAGGAAGTGCAATTGTTTTATTATTTTGTGAAATCGGAAGGAAATCCAAAGACGGATCCTCTGCTTTTTTGGCTCACCGGAGGCCCCGGTTGCTCTGCTTTAACTGCACTTGCCTTTGAAGTTGGTCCCATAAATTTTAAGATTGAGCGATACAATGGGAGCTTACCTAAAATAATCTTGAACCCTTATTCGTGGACGAAGAAATCCAGTATAATAATGGTAGATTTGCCAGTGGGAACAGGATTTTCATATGGTAAAACTCCACAATCTCTTAAGACTGGAGATTTTAATCAAGTTCATCATTCTATTCAATTTTTTAAAAAGTGGTTAACTCATCATCCGGAATTTATATCTAATCCATTTTATGTGTGTGGAGATTCATACTCGGGTATTATCATTCCGGTTATTGCTCAAGAAATTTTGGAAGAAAATAAGTATGCTCCCTATGTAAATCTTCAGGGATACATATTGGGAAACCCAGTCACCATTCGTGACACGTATCAAAATTTTGCAATTCCTTTTGCTCATAGAATGACTCTTATCTCTGATGAGTTATTTGAGTCATTGACCTCTAGTTGCAAGGGAGAATATATAAATATTGATCCGAGCAATGTGGATTGTTTAAGACATTATAATACGTACCAAAAGTGTGTCTCAAAGATAGAAAAGTCATGTATTTTGTTGCCAAAATGTTCGTTTCATTCTCCAAAGAAACAAAAAGATGCATTTGATCGAAGATCTCTTTACAATAACCCCAAAGTGCTTCTTGATCCCGAGCCAGCACTTCCTTCTCTTGATTGTCCTACCTATAAATTCCTACTTTCATTTTATTGGGCAAACAATAATCAAGTTCGGAAAGCACTCCACATACGAGAGGGAAGCATTGGAGAATGGACAAGATGTAGGGATCAGCAAAATTACAACTTTGATGTTGAGAGTGCTTTTCCTTATCATGTGAAGCTTAGTTCAAAAGGTTACAAGTCTTTGATTTATAGTGGGGATCATGATATGATTGTATCGCATTTGGACACTCAAGCATGGATTAAATCTTTAAATTATTCCATTGTTGAGGATTGGAGACCTTGGTTTATTGCAGATCAAGTAGCTGGATATACAAGAAGCTATGCAAATAAGATGACATTTGCCACTATAAAAGGTGGAGGGCACACAGCAGAATATACACAAAAAGAATGCAGTGTAGTATTTAGTAGATGGATAACTGGAGAACCCTTATAA | 1395 | 38.78 | MPTAVFRVSVLFVSVFQIISAAGSSRWTVEYLPGFAGRLPFELETGYVGVGDLEEVQLFYYFVKSEGNPKTDPLLFWLTGGPGCSALTALAFEVGPINFKIERYNGSLPKIILNPYSWTKKSSIIMVDLPVGTGFSYGKTPQSLKTGDFNQVHHSIQFFKKWLTHHPEFISNPFYVCGDSYSGIIIPVIAQEILEENKYAPYVNLQGYILGNPVTIRDTYQNFAIPFAHRMTLISDELFESLTSSCKGEYINIDPSNVDCLRHYNTYQKCVSKIEKSCILLPKCSFHSPKKQKDAFDRRSLYNNPKVLLDPEPALPSLDCPTYKFLLSFYWANNNQVRKALHIREGSIGEWTRCRDQQNYNFDVESAFPYHVKLSSKGYKSLIYSGDHDMIVSHLDTQAWIKSLNYSIVEDWRPWFIADQVAGYTRSYANKMTFATIKGGGHTAEYTQKECSVVFSRWITGEPL | 464 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31857529 | 31861115 | - | CcPI632755_05g023310.1 | Cco05g2331 | 179959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2331 | 464 | SUPERFAMILY | alpha/beta-Hydrolases | 29 | 462 | IPR029058 | - | |
Cco05g2331 | 464 | Gene3D | alpha/beta hydrolase | 29 | 463 | IPR029058 | - | |
Cco05g2331 | 464 | FunFam | Carboxypeptidase | 319 | 463 | - | - | |
Cco05g2331 | 464 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 162 | 187 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco05g2331 | 464 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 114 | 126 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco05g2331 | 464 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 127 | 137 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco05g2331 | 464 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 432 | 445 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco05g2331 | 464 | FunFam | Serine carboxypeptidase-like 11 | 23 | 464 | - | - | |
Cco05g2331 | 464 | PANTHER | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | 28 | 458 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER) | |
Cco05g2331 | 464 | Pfam | Serine carboxypeptidase | 33 | 460 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2329 | Cco-Chr5:31823233 | Cco05g2331 | Cco-Chr5:31857529 | 1.40E-188 | dispersed | |
Cco05g2331 | Cco-Chr5:31857529 | Cco05g2932 | Cco-Chr5:36810265 | 1.20E-193 | dispersed | |
Cco05g2330 | Cco-Chr5:31840864 | Cco05g2331 | Cco-Chr5:31857529 | 3.80E-184 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2331 | K16296 | - | csv:101207623 | 595.89 |