Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2331 ATGCCCACCGCCGTCTTCCGCGTCTCTGTTCTGTTCGTCTCTGTTTTTCAAATCATCTCCGCCGCAGGGTCGTCGCGCTGGACGGTGGAGTATCTGCCGGGATTTGCAGGCCGTCTCCCATTCGAACTGGAAACAGGATATGTGGGTGTTGGGGATTTGGAGGAAGTGCAATTGTTTTATTATTTTGTGAAATCGGAAGGAAATCCAAAGACGGATCCTCTGCTTTTTTGGCTCACCGGAGGCCCCGGTTGCTCTGCTTTAACTGCACTTGCCTTTGAAGTTGGTCCCATAAATTTTAAGATTGAGCGATACAATGGGAGCTTACCTAAAATAATCTTGAACCCTTATTCGTGGACGAAGAAATCCAGTATAATAATGGTAGATTTGCCAGTGGGAACAGGATTTTCATATGGTAAAACTCCACAATCTCTTAAGACTGGAGATTTTAATCAAGTTCATCATTCTATTCAATTTTTTAAAAAGTGGTTAACTCATCATCCGGAATTTATATCTAATCCATTTTATGTGTGTGGAGATTCATACTCGGGTATTATCATTCCGGTTATTGCTCAAGAAATTTTGGAAGAAAATAAGTATGCTCCCTATGTAAATCTTCAGGGATACATATTGGGAAACCCAGTCACCATTCGTGACACGTATCAAAATTTTGCAATTCCTTTTGCTCATAGAATGACTCTTATCTCTGATGAGTTATTTGAGTCATTGACCTCTAGTTGCAAGGGAGAATATATAAATATTGATCCGAGCAATGTGGATTGTTTAAGACATTATAATACGTACCAAAAGTGTGTCTCAAAGATAGAAAAGTCATGTATTTTGTTGCCAAAATGTTCGTTTCATTCTCCAAAGAAACAAAAAGATGCATTTGATCGAAGATCTCTTTACAATAACCCCAAAGTGCTTCTTGATCCCGAGCCAGCACTTCCTTCTCTTGATTGTCCTACCTATAAATTCCTACTTTCATTTTATTGGGCAAACAATAATCAAGTTCGGAAAGCACTCCACATACGAGAGGGAAGCATTGGAGAATGGACAAGATGTAGGGATCAGCAAAATTACAACTTTGATGTTGAGAGTGCTTTTCCTTATCATGTGAAGCTTAGTTCAAAAGGTTACAAGTCTTTGATTTATAGTGGGGATCATGATATGATTGTATCGCATTTGGACACTCAAGCATGGATTAAATCTTTAAATTATTCCATTGTTGAGGATTGGAGACCTTGGTTTATTGCAGATCAAGTAGCTGGATATACAAGAAGCTATGCAAATAAGATGACATTTGCCACTATAAAAGGTGGAGGGCACACAGCAGAATATACACAAAAAGAATGCAGTGTAGTATTTAGTAGATGGATAACTGGAGAACCCTTATAA 1395 38.78 MPTAVFRVSVLFVSVFQIISAAGSSRWTVEYLPGFAGRLPFELETGYVGVGDLEEVQLFYYFVKSEGNPKTDPLLFWLTGGPGCSALTALAFEVGPINFKIERYNGSLPKIILNPYSWTKKSSIIMVDLPVGTGFSYGKTPQSLKTGDFNQVHHSIQFFKKWLTHHPEFISNPFYVCGDSYSGIIIPVIAQEILEENKYAPYVNLQGYILGNPVTIRDTYQNFAIPFAHRMTLISDELFESLTSSCKGEYINIDPSNVDCLRHYNTYQKCVSKIEKSCILLPKCSFHSPKKQKDAFDRRSLYNNPKVLLDPEPALPSLDCPTYKFLLSFYWANNNQVRKALHIREGSIGEWTRCRDQQNYNFDVESAFPYHVKLSSKGYKSLIYSGDHDMIVSHLDTQAWIKSLNYSIVEDWRPWFIADQVAGYTRSYANKMTFATIKGGGHTAEYTQKECSVVFSRWITGEPL 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31857529 31861115 - CcPI632755_05g023310.1 Cco05g2331 179959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2331 464 SUPERFAMILY alpha/beta-Hydrolases 29 462 IPR029058 -
Cco05g2331 464 Gene3D alpha/beta hydrolase 29 463 IPR029058 -
Cco05g2331 464 FunFam Carboxypeptidase 319 463 - -
Cco05g2331 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2331 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2331 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2331 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2331 464 FunFam Serine carboxypeptidase-like 11 23 464 - -
Cco05g2331 464 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 458 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cco05g2331 464 Pfam Serine carboxypeptidase 33 460 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2329 Cco-Chr5:31823233 Cco05g2331 Cco-Chr5:31857529 1.40E-188 dispersed
Cco05g2331 Cco-Chr5:31857529 Cco05g2932 Cco-Chr5:36810265 1.20E-193 dispersed
Cco05g2330 Cco-Chr5:31840864 Cco05g2331 Cco-Chr5:31857529 3.80E-184 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2331 K16296 - csv:101207623 595.89