Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2342 ATGGGCGTTGTTTGTTGGCTTCTGGGGGAAGTGGTTTGGAACTTTGGATGGATTGAAGTGAAGGATTTATGTTGCTTTTCTGCTACTTTCTGCTCGTTTCTTCTCTTAATCTGTGATGTCTTTTGCTGGATGACGAGTACTTTAATGGCAGGAATGTTTAATGGGGAGGGATCGTCGTCGGTAACTTCGTCGCCTTTGCAGTTCTTTCCATGGTCGTTATCGCCCGGTATAGGGTCACCATACCCTTTTCTAAGGGAGCTCAAATCTGAAGAGAGGGGGTTGTGTCTGATTCACCTTCTTCTTGCCTGTGCCAACCAAGTTGCTATTGGTAACATTGAAAATGCTAATGTTGGCCTGGAGCAAATTTCCCACCTTGCTTCACCCGACGGGGACACAATGCAGCGGATTGCTGCTTACTTCACCGAGGCACTCGCTGACCGGATACTCAAATCCTGGCCTGGCTTACACAAAGCCTTGAACTCTACCAAAATATTGTCAGTCCCTGAAGAGATTCTTGCTCAGAGATTGTTCTTTGAACTATGTCCTTTCTTGAAGCTTGCATATGTGATAACTAATCAGGCTATTATAGAAGCTATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCTCAGTGGATAAACCTTCTTCAAACATTGAAAGATAGGCCAGATGGTCCACCCCACTTGAGAATAACTGGAATTCATGAACAAAAAGAGGTGTTGGAACAAATGGCTCTTCGGCTTACCGAAGAGGCCGAAAAATGGGATATACCATTTCAATTCACCCCAGTTGTTAGCAAATTAGAAAACCTTGACCTTGAAAGTTTAAAGGTCAAGACAGGTGAAGCACTTGCAGTTAGCTCTGTACTTGAACTTCACTCGGTTTTGGCTACAGACGACGATAAGAAAACGTCACCATCTGCATCAAAGAACTTGCAAAAACTCCTACGTATGAAGCAGCGAACACTCGGAGAGTGGCTGGAGACAGATTCGTTGCAAGTTTTTGGTAGTCCTGATTCGGCCTCAGTATCTTCCCCATCAGGATTGAATCCTTCCCAAAAGATGAACAGTTTTTTGACTGCGCTATGGGGCCTTTCTCCAAAAGTTATGGTAATAACTGAACAAGAATCAAACCTGAATGGATCTGCTTTCATGGAGAGAGTACTAGAAGCATTAAACTTCTATGCCGCATTGTTTGATTGCTTAGAGTCAACCGTCTCAAGATCATCGATCGAGCGACAAAGGGTTGAGAAGATGCTTTTAGGAGAGGAAATAAAAAACATCATTGCTTGTGAGGGGGTGGAGAGGACAGAGAGGCACGAAAAGCTCGAGAGATGGATACTGAGGCTCGAATCCGTGGGGTTCGGAAAGGTTCCATTGAGTTATCATAGTATGTTACTGGGAAGTAGATTGTTGCAGAGCTATGGATATGATGGCCGCACACCGATCACATCTCTTATTTTTCCCCTCTGCCGTTGCCGACGCCGATCGCCGCCACGCCTCCACCGCCATTTTCTTTCTCACTGTCTGCTGCAGGCTCACGCCGCCACCACTCCAACCCCATTTTCCCTCTCTCCTGAGATGGAGGGTTCCATTGCTGAAGAACTTTATTCCGAGAGTTTACAGTCAACAAAATCAAAATTGGGTGATTTGTCATTATCTGATTACAGACAAAATCGGCCGTCAGGTTCTGGTGTGGATGACTTGTGCGAAGATGACGGATCTTTATGGGGTGGTTCTGATGAAGGCTTGGAGGAAACAACTGATTTGGACAGGGAGTGGCAGAGAAGACATGACCAATTTCATACGATTGGATACCGCGATGGTTTAATTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAATGTTGGCTTCAAGCAGTCAGTCTCTGTCGGATATAAGTTGGGTCTTGTCAGAGGTGTTAGCAGTGTGCTTGCTTCCCTTCCTGATGACTTAAAAGAGAAGCTAGCAGGAACTGAAGAGAACCGAAGAAAATTTCAAAGCTTGTATGAATCTGTGAACTCTCTTTCGACAGTAGATGCACTTAGGCTATTCAATGATGATATTACCGCACAGCAGCGTGTAAATGAAAATACAAATTCCCAAACAAAGAATTTGTCGAAGCAAAATTCAGATTATGGTCGTCTAAGAAAGTTCTATGGAGAGCTTGAAGCACTTCTATCCAAATCACCTGCTCTGAATCTTCATTTACATGAAGAACAGTAG 2247 44.24 MGVVCWLLGEVVWNFGWIEVKDLCCFSATFCSFLLLICDVFCWMTSTLMAGMFNGEGSSSVTSSPLQFFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLKVKTGEALAVSSVLELHSVLATDDDKKTSPSASKNLQKLLRMKQRTLGEWLETDSLQVFGSPDSASVSSPSGLNPSQKMNSFLTALWGLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGVERTERHEKLERWILRLESVGFGKVPLSYHSMLLGSRLLQSYGYDGRTPITSLIFPLCRCRRRSPPRLHRHFLSHCLLQAHAATTPTPFSLSPEMEGSIAEELYSESLQSTKSKLGDLSLSDYRQNRPSGSGVDDLCEDDGSLWGGSDEGLEETTDLDREWQRRHDQFHTIGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASLPDDLKEKLAGTEENRRKFQSLYESVNSLSTVDALRLFNDDITAQQRVNENTNSQTKNLSKQNSDYGRLRKFYGELEALLSKSPALNLHLHEEQ 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31932949 31940620 - CcPI632755_05g023420.1 Cco05g2342 179970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2342 748 Pfam Essential protein Yae1, N terminal 611 648 IPR019191 -
Cco05g2342 748 ProSiteProfiles GRAS family profile. 87 512 IPR005202 -
Cco05g2342 748 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 91 484 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco05g2342 748 Pfam GRAS domain family 96 485 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2342 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1331 Cco-Chr3:26718632 Cco05g2342 Cco-Chr5:31932949 9.70E-151 dispersed
Cco05g2342 Cco-Chr5:31932949 Cco11g0745 Cco-Chr11:8265701 2.20E-56 dispersed
Cco05g2342 Cco-Chr5:31932949 Cco03g0141 Cco-Chr3:1373861 9.30E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g2105 . 74 740 GRAS Transcription Factor Family AT2G37650 55.0 2.8e-194 675.6
Cco03g0141 . 382 764 GRAS Transcription Factor Family AT3G46600 56.9 3.9e-127 452.2
Cco04g1500 . 50 468 GRAS Transcription Factor Family AT3G49950 60.4 3.4e-136 481.9
Cco07g1164 . 36 443 GRAS Transcription Factor Family AT5G41920 66.1 8.6e-148 520.4
Cco04g0775 . 543 936 GRAS Transcription Factor Family AT5G41920 55.4 1.5e-115 413.3
Cco07g0988 . 8 553 GRAS Transcription Factor Family AT5G66770 58.6 7.8e-166 580.9
Cco04g1706 . 1 569 GRAS Transcription Factor Family AT5G66770 54.6 1.2e-150 530.4
Cco10g0442 . 49 544 GRAS Transcription Factor Family AT1G50600 58.6 5.2e-161 564.7
Cco02g1039 . 57 521 GRAS Transcription Factor Family AT1G50600 58.6 1.2e-149 526.9
Cco04g1920 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 8.3e-143 504.2
Cco09g0972 . 190 570 GRAS Transcription Factor Family AT1G50600 50.1 1.9e-107 386.7
Cco10g0378 . 1 634 GRAS Transcription Factor Family AT1G63100 50.9 1.1e-165 580.5
Cco01g0663 . 44 581 GRAS Transcription Factor Family AT1G14920 67.7 1.2e-205 713.0
Cco03g0873 . 47 596 GRAS Transcription Factor Family AT1G14920 62.0 2.0e-184 642.5
Cco05g1320 . 32 556 GRAS Transcription Factor Family AT1G14920 56.6 1.6e-157 553.1
Cco10g0360 . 34 398 GRAS Transcription Factor Family AT1G55580 52.3 1.5e-105 380.2
Cco03g0873 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 3.8e-177 618.2
Cco01g0663 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.8e-173 603.6
Cco05g1320 . 1 557 GRAS Transcription Factor Family AT1G66350 55.9 5.9e-162 567.8
Cco02g2141 . 251 771 GRAS Transcription Factor Family AT1G07520 50.7 1.2e-141 500.4
Cco02g1039 . 19 518 GRAS Transcription Factor Family AT5G48150 64.2 2.8e-177 618.6
Cco10g0442 . 40 544 GRAS Transcription Factor Family AT5G48150 60.6 5.5e-173 604.4
Cco04g1920 . 16 548 GRAS Transcription Factor Family AT5G48150 51.8 1.3e-150 530.0
Cco01g0663 . 46 578 GRAS Transcription Factor Family AT2G01570 68.6 1.6e-211 732.6
Cco03g0873 . 48 594 GRAS Transcription Factor Family AT2G01570 63.1 5.0e-189 657.9
Cco05g1320 . 31 556 GRAS Transcription Factor Family AT2G01570 58.4 1.8e-162 569.7
Cco03g0873 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 3.8e-177 618.2
Cco01g0663 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.8e-173 603.6
Cco05g1320 . 1 557 GRAS Transcription Factor Family AT1G66350 55.9 5.9e-162 567.8
Cco03g0873 . 48 594 GRAS Transcription Factor Family AT3G03450 62.4 6.3e-178 620.9
Cco01g0663 . 10 578 GRAS Transcription Factor Family AT3G03450 58.2 2.6e-171 599.0
Cco05g1320 . 31 556 GRAS Transcription Factor Family AT3G03450 58.6 2.0e-160 562.8
Cco03g0873 . 47 596 GRAS Transcription Factor Family AT5G17490 56.4 2.4e-158 555.8
Cco01g0663 . 42 578 GRAS Transcription Factor Family AT5G17490 57.3 2.5e-155 545.8
Cco05g1320 . 28 556 GRAS Transcription Factor Family AT5G17490 52.8 1.2e-138 490.3
Cco09g0972 . 1 570 GRAS Transcription Factor Family AT1G21450 57.1 6.7e-173 604.4
Cco10g0442 . 168 544 GRAS Transcription Factor Family AT1G21450 52.6 4.8e-115 412.1
Cco03g0141 . 390 764 GRAS Transcription Factor Family AT5G59450 57.0 6.1e-129 458.4
Cco04g1920 . 1 548 GRAS Transcription Factor Family AT4G17230 58.3 2.8e-175 612.1
Cco02g1039 . 1 519 GRAS Transcription Factor Family AT4G17230 50.4 7.6e-136 481.1
Cco10g0442 . 60 544 GRAS Transcription Factor Family AT4G17230 52.0 8.4e-135 477.6
Cco02g1039 . 134 518 GRAS Transcription Factor Family AT2G04890 65.8 4.8e-146 514.6
Cco10g0442 . 166 544 GRAS Transcription Factor Family AT2G04890 62.3 4.2e-142 501.5
Cco04g1920 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 2.8e-125 445.7
Cco03g1331 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 7.3e-178 620.5
Cco05g2342 . 49 485 GRAS Transcription Factor Family AT1G50420 60.1 2.6e-143 505.8
Cco06g0311 . 378 743 GRAS Transcription Factor Family AT4G00150 59.9 2.5e-121 433.0
Cco10g0272 . 413 776 GRAS Transcription Factor Family AT4G00150 55.2 2.8e-104 376.3
Cco07g0988 . 9 553 GRAS Transcription Factor Family AT3G50650 52.9 1.7e-143 506.5
Cco04g0775 . 334 934 GRAS Transcription Factor Family AT3G54220 63.8 3.6e-204 708.4
Cco07g1164 . 73 441 GRAS Transcription Factor Family AT3G54220 64.0 7.9e-135 478.0
Cco04g1511 . 106 495 GRAS Transcription Factor Family AT4G37650 67.7 1.7e-156 549.7
Cco02g1360 . 106 496 GRAS Transcription Factor Family AT4G37650 55.9 7.4e-123 438.0
Cco06g0100 . 63 455 GRAS Transcription Factor Family AT4G37650 50.1 5.0e-111 398.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002014 2 5 1 2 2 2 3 2 2 1 2 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 2 3 2 0 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59363 PF03514 GRAS 2.90E-120 CL0063 Cco TF