Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2347 ATGCCGCCAGAACCTTTGCCGTGGGACAGGAAAGACCTCTTCAAGGAGAGGAAACACGAGAAGTCGGAGGCCATAGGGTCTGCGGCCAGATGGCGGGACTCTTATCATGGATCTCGCGAGTTCAATCGGTGGGGTTCTGCTGACTTTCGAAGACCTACTGGTCATGGTAAGCAGGGTAGTTGGCACCAGTTTTCTGAAGAATCTAGTCACGGTTATGGGCCTTCTCGGTCATTCAGTGACAGGGTGTTAGAAGATGAGAGCTTCCGGCCGTCAGTTCCTCGTGGAGATGGAAGATATATTAGAATCGGTAGAGAAATTAGAGGTTCTTTTAGTCATAGAGACTGGAGAAGTCACTCCAGGGAGACCAACAATGGATTTGGGAACCCATCGCGAAGGCCATCATCGGCATCGCAGGATGCAAGTTCTGATCAGAGGTCAGTAGATGATACGGTGACATATTCCTCTCCTCAATCTGTTCATGGGTTAGAAAATGGCCCGAGGGCCGATGTGGAAGTTTCCCTTGGCTCCACTGATTGGAAGCCACTTAAGTGGTCCCGATCTGGGAGTTTGTCTTCCCGGGGATCTGCTTACAGCAGTTCGACGAACTCGAAGAATGAAAAGGCTGATTTACCTCTTAGAGTTGCATCTCCTATAGAAAGCCCTTCTGCCGAAACTACTGCCTGTGTGACATCTTCTCTGCCTTCTGAAGATGCAATTTCTAGGAAGAAGCCAAGGCTTGGATGGGGTGATGGATTAGCCAAATACGAGAAAGAAAAAGTTGAGGTTCCTGATGGAAGCCTGAGAAAAGAAGTGGCTCTTCTTTCAAGCGCCAGTGCTGAATTAACTCATTCCCTTGGTTCAAACTTTGCTGAGAAAAGTCCCAAAACTTTGCCCTTTTCAGATTGTGCATCTCCTGCAACTCCATCCTCTTTTGCCTGCAGTTCATCATCAGGCTTGGAGGATAAAACATTTAGTAAGGGAGCAAGTGTGGATGGCATGATATGTAGTTCACCTGGGTCCAGTTCTCAAAATCTTCAGAAATTATTGTCTAGTATAGAAATGATGGAGTTCGGTTCAATTGCTAATTTAGGATCATCACTTGTCGAACTGTTTCATTCTGATGATCCGAGTACAGTAGAATCATGTTTTGGGAAGTCTACATTGAATAAGCTGCTAGCATATAAAGGTGAAATTTCAAAGAAATTGGAGACTACAGAGTCTGAAATTGATTCTCTTGAAAATGAACTTAAATCTTTGAAATCTGGAAATGGAGGCAATGTTTCTCATAAAAAATCTTGCAGCGTCACACATTTGGTGGAGAATGTGACATATTTCAAAGAACAAGATGGTGTCTCTTGTGTTGCCCCTCGTCCTGCTCCCTTGGTGATAGTTTCGTCTTCTGATGCAACAGTTGAGAAGATGCCAGTCTGCAAGGGTGACATGGGAGTTGAAGATGTTGATACAAAGGCTGATGAAATTGATAGTCCTGGAACTGTGACATCAAAATTTAACGAACCATCCCGAGTGGTAAAGACTCTTGCTTCTGATCTTGTGGTAAATGGTCATTGCTCTGAAGTTACAGATGTAATTGTCCCTGACAAGATGGAAGGGAATTTTCCCGTATCTAGGTCTTTTGTGGACAAACATAAAACAATTGGCTCTGACAATGAATGCATTCTTGCTAAGAGTTGTACCAAGGAATCTATTTATGGTGATTTGATGGCCCAAGCTGGCAGTAGATCATCTCTTTGTGATCAAATTTTTGTGTGTAATAAAGAATATGCAAGTAGAGCTGCAGAAGTAATTTTTAAGAAATTACCAGCGGAAATGTGCAAGATCAGCAGTAAAAGCACCAAAATTGTGTCCTGCTCAGAGATTGAGAAACTTGTTAAAGAGAAATTTCTAATGAGGAGGCAGTTCTTAAAATTTAAGGAGAGTGCATTAACCCTCAGATTTAAAGCCTTGCAACAATCGTGGAAAGAAGGTTTGCTGCATTCTGTGAAGAAATGTCGCTCAAGGCCACAAAAAAAGGAGTTGAGTCTAAGGGTGTCACATTCTGGCCATCAGAAGTACAGGTCTTCAACTCGCTCCCGTTTGGTTCAGCAAGGAGCATGTCAGAACCCTACCCTTAACACAGAAATTGCTGTTCGTTACTCCAGTAAGCTGCTGTTGAATCCTCAAATTAAGCTTTACAGGAATAGTTTAAAGATGCCAGCTATGATTTTGGACAAGAAGGAAAAGATGGCATTAAGGTTCATCTCTCATAATGGGTTGGTTGAAGATCCCTGTGCTGTTGAGAAGGAAAGGAACATGATAAACCCTTGGACTTCAGCCGAGAGAGAGATATTCTGGGAGAAACTATCCTTGTTTGGAAAGGATTTTAAGAAAATTTCTTCATTTCTCGACCTCAAAACCACAGCTGACTGTATCCAGTTCTATTACAAGAACCACAAATCTGATAGTTTTAAGAAGAATAAAAATTTGGAGTTGGGCAAGCAAGTGAAATCTTCTGCCATCACATACTTGGTTACATCAGGGAAAAAATGGAATCCAGACATGAATGCTACTTCCCTCGATATCTTAGGTGTTGCTTCAATAATGGCAGCACAAGCAGACTACGACATTGGAAACAAGCAAAAATGTACTCGCCATTTGGGTATGGGAAGGGATGTTGAGTCAAAAGTATCATGTAGTGCTAGCACTCCTTCAAATAAAAACAATTTGGATGCTCTTCAGACTGAAAAAGAAACGGTTGCTGCTGATGTGCTTGCTGGTATATGTGGTTCAATATCTTCGGAGGCCCTGAGTTCTTGCATTACAAGTGCTATTGATCCCAGTGAGGACCACCGGGAGCGGAAGTGTTATAAAGTGGATTCTGCAGTGAAATTGCCTTCGTTGTCTGACGTCATGCAGAAAACTGATAATGAGGAACCTTGTTCAGATGATAGTTCTGAGGATGTAGATTCTTCAAATTGGACAGATGAGGAGAAGTCGATATTCATGCAGGCTGTGTCGTCCTATGGTAAGGATTTTGATATGATCTCTAGATGTATCAGGTCAAAGTCTAGGGACCAGTGCAAGGTTTTCTTCAGCAAAGCTCGGAAATGCCTTGGACTGGATTTGATGCATACTTCTGGAGATGTAGGCGAAACACCTGGGAGTGGTAATGACGCCAGTGGGAGTGGGACTGACACAGAAGATCACTGTATTGTTGAAATCTGTGGAGCCCATGGCAGTGATGAATTTGTCTCCAAGTCAATCAACGGTGTATCAACATCTGTTAACATAAATCATGAAGAATCTGTTTCTGCTGTGACTGTCAACATGCGGACCAGTAGTGAATTTGAGGAAAGTACAGTATTGCAACAGTCGGATGAGAAATGTGCTGAGGCTGTTGGAAACTTGATGTCTGAGATATCGAAGGAAGAGGATTTGCCTAGTCCAGATTCCCATTCTGCCTACAATCTCACAAATGCAGCTGCTTCTTTGAGCCAGCCCGTGCATGACCACAAAATTGAAGGCTCTTCTGAAAATACCGAAGGTGGAAGCAAGTGCTGTAATGAACCTGACATTCTGAGATCTGAATCGGTCTCCACTGTTGATGAAAATTCAGCTGCTGTGAGCGAGAGCAGAGCTACAGCGAAGCTTGCATTTGGAGGAGAAGAAGAAGGAAGGAACACTAATTTACATGTTCAGAGTATATTGCAGTGCTCAGTTCAGGATTCAACTGGGTTTGATTCCAATCTTGCTTTAGAGGGCAGCTCCTTAGGACTTGATCCACAAATCTTGCATCCAACCGTTCTTAAAGTGGAACATGTAGAGAAGTCTTGTGTCGAGTCTGAGAACTCTCTTGCTGTCGGGAATTCTGATCCTGGTGTCATTGGAAGGGAACAGATGCTTAACCAAGATATGTTGTCATCAATAGCTGTCTTGCAGGAGGTTAGTGATGCGCATCAGAAGCCTATGAATAGAGATGACTATGCTGAGCATCAAAATAATTTCTCTCTCGATAGTGAATCCAAGTTTCCAAGAAGCTATCCTTTCAACAAACAAATCTTTGAGGACATCAATAGAAATATCAATCGCACATATTTTCCTGTTGTTCAAGGGCTGTCAAAGCCAGACATCAATTGTAACAGTTCATATGTTTCTGAGGGCCACTATCTTCAGAATTGTAACAGTTCCAAGCCGCACAACCCGGCTGAGCTTCCTTTTTTGCCTCAGAATATAGACTTGGGTCATGATCGTCAGAAGAAAGCTTTATGCAGTGGCAGTGCTTCAGATTCTGATGTTCCACGCAGGAAAGGTGATGTGAAACTGTTTGGTCAGATACTAAGTCATGCCCCTTCCAAGCAAAATTCGAGTTCTGGTTCGAACGAGGGTGGAGAGGAGAAGGGACTTCACAAATCCAGCAGCAAATCATGCGACATCGGAGAAAATGTTCCGTTAAGGAGTTACGGTTTTTGGGATGGAAGCAGAATACAGACGGGTTTGTCTGCTTTGCCGGATTCTGCCATTTTACAAGCCAAGTATCCTGCTGCATTCAGTGGCTACTCTGCTACGTCTGTTAAAACTGAACAGCAGCCATTGCAGGCACTCACAAATAATGGTGACCGAAGTCTTAATGGACTAGTGTCCGCATTTCCAACCAAGGATGGAGTGGTAGATTATCATTCGTATAGGAGTCGAGATGGAGTTAAGATGCGACCTTTCCCAGTTGATATATTTTCTGAGATGCAAAGAAGAAATGGCTTCGATGCTGTGTCCTTGTCAAGTTTACAGCAGCGGGGAAGGGTGCTAGTTGGAATGAATGTTGTTGGAAGGGGAGGGATTCTCATGGGTGGTTCTTGTACTGGTGTTTCAGATCCTGTAGCAGCCATTAAAATGCACTATGCCAAGGCCGAGCAATACGTTGGGCAACCTGGTAGTACATTCACTAGAGAAGATGGTAGTTGGAGAGGAGGTAATGGTGGAGATTTAGGCAGCAGGCATCAAGAAAAGAGTTGTAAATGTAACGACCAACGAGATGAAAACCAACCAATGGCTTATAGTTATGAGGTCGTGTCAACGGCGGAGCAAAAAGTTCCAATGCGCCTATCTGTATCAACATCATCGGCCTTCTTAAGATCCAGCAGTTATATCTGCTTTCTGAAACCAGACAAATCTAAGAAAAAATGGTTTCAAAAGGAGGAGAGTGTGGATGTGATTTCCTTTTTGGAACAATCTCCATTGGACGTTCCTGCACAACCTCCAATAGAAGATGATGTCAAACAAACCGAACCGGAGAATGAACCAAGCGAGCTTGCGCATTTGGAGGCTGCGGAGTCGGCTGTTGCTGAAGCTCAGCTGGCTGTGGTGGTTGAATATCCACCTAGTCCTATCTCCTGTCGGCCAGAAATGTCGGAGGAAACAGCAGCTAGTGTGATTCAAACTGCATTTCGTGGATATACGGCAAGGAGAGCATTGAGAGCTCTCAAAGCGTTGATGAGATTGAAGACATTGGTACAAGGGCAATCTGTCAAACGGCAAGTGGCCTCTACTTTAAAATGCATGCAAACCCTTACTCATTTACAGTCAGAGATTCGTGCAAGAAGAATAAGAATGTCGGAAGAAAATCAGGCTCTTCAGCGACAACTTCGTAACAAACGTGAGAAAGATCTCGAGAAGTTAAAATTTGCTATGGATGATGACTGGAATGATAGCACCCAATCTAAAGCACAAATTGAAGCTAAACTATTGAACAAGCATGAAGCTGCAATAAGAAGAGAAAGGGCTCTGGCTTATGCTTACTCTCATCAGCAAACATGGAAGAACTCTTCAAAAACTTCAACCCCCACTGTCATGGATCCAAACAATCCCCACTGGGGTTGGAGTTGGTTGGAGAGGTGGATGGCAGCTCGTCCATGGGAATCTCAAAGCACCACTGATCAGCCGGATCACATTTCTGTCACGAGTGTTGCAACTCGTGCATCTGTGGTCGACATTCTCCAAATTTATGCTCGGCGTGATCAGAACCCTTCTACCAAGCTTTCTCCAAAGTCTCCTACAAGCCAAAAGTCAAGCCAATTGCCTAAGTATCATTCACCTTCAACTCCCAAGGCACTATTTTCATCATCTGGCAGAAAGAAAACAAATGCAGCCAACTCAAGGATAGGCAGCTGGGGCAGAGATGAAGACATAAGGAGCATCACTAGTGTCAAATCAAAGCTCTCCCGGAGGCATACTATTGCAGGATCATCATTCAGGGATGATGAAAGCCTTGCCAGTTTACCTTCAGTTTCAAGTTACACGACGCCATCGAAGGCTGTGAAGAATCGGTCCCGGTTGGCAAGTTCGTCTAGAATAGAGAAGAAAGGAACAATGGAAAAAGGATCTGCAAGTGCAGGTTCTGCAAAAAAACAACTTTCCTTTTCAGCTTTTCCTGTTAAGCCAAGGAGGCAATCTAGTCCTCCAATTGTGAATACTAGCTAA 6471 43.64 MPPEPLPWDRKDLFKERKHEKSEAIGSAARWRDSYHGSREFNRWGSADFRRPTGHGKQGSWHQFSEESSHGYGPSRSFSDRVLEDESFRPSVPRGDGRYIRIGREIRGSFSHRDWRSHSRETNNGFGNPSRRPSSASQDASSDQRSVDDTVTYSSPQSVHGLENGPRADVEVSLGSTDWKPLKWSRSGSLSSRGSAYSSSTNSKNEKADLPLRVASPIESPSAETTACVTSSLPSEDAISRKKPRLGWGDGLAKYEKEKVEVPDGSLRKEVALLSSASAELTHSLGSNFAEKSPKTLPFSDCASPATPSSFACSSSSGLEDKTFSKGASVDGMICSSPGSSSQNLQKLLSSIEMMEFGSIANLGSSLVELFHSDDPSTVESCFGKSTLNKLLAYKGEISKKLETTESEIDSLENELKSLKSGNGGNVSHKKSCSVTHLVENVTYFKEQDGVSCVAPRPAPLVIVSSSDATVEKMPVCKGDMGVEDVDTKADEIDSPGTVTSKFNEPSRVVKTLASDLVVNGHCSEVTDVIVPDKMEGNFPVSRSFVDKHKTIGSDNECILAKSCTKESIYGDLMAQAGSRSSLCDQIFVCNKEYASRAAEVIFKKLPAEMCKISSKSTKIVSCSEIEKLVKEKFLMRRQFLKFKESALTLRFKALQQSWKEGLLHSVKKCRSRPQKKELSLRVSHSGHQKYRSSTRSRLVQQGACQNPTLNTEIAVRYSSKLLLNPQIKLYRNSLKMPAMILDKKEKMALRFISHNGLVEDPCAVEKERNMINPWTSAEREIFWEKLSLFGKDFKKISSFLDLKTTADCIQFYYKNHKSDSFKKNKNLELGKQVKSSAITYLVTSGKKWNPDMNATSLDILGVASIMAAQADYDIGNKQKCTRHLGMGRDVESKVSCSASTPSNKNNLDALQTEKETVAADVLAGICGSISSEALSSCITSAIDPSEDHRERKCYKVDSAVKLPSLSDVMQKTDNEEPCSDDSSEDVDSSNWTDEEKSIFMQAVSSYGKDFDMISRCIRSKSRDQCKVFFSKARKCLGLDLMHTSGDVGETPGSGNDASGSGTDTEDHCIVEICGAHGSDEFVSKSINGVSTSVNINHEESVSAVTVNMRTSSEFEESTVLQQSDEKCAEAVGNLMSEISKEEDLPSPDSHSAYNLTNAAASLSQPVHDHKIEGSSENTEGGSKCCNEPDILRSESVSTVDENSAAVSESRATAKLAFGGEEEGRNTNLHVQSILQCSVQDSTGFDSNLALEGSSLGLDPQILHPTVLKVEHVEKSCVESENSLAVGNSDPGVIGREQMLNQDMLSSIAVLQEVSDAHQKPMNRDDYAEHQNNFSLDSESKFPRSYPFNKQIFEDINRNINRTYFPVVQGLSKPDINCNSSYVSEGHYLQNCNSSKPHNPAELPFLPQNIDLGHDRQKKALCSGSASDSDVPRRKGDVKLFGQILSHAPSKQNSSSGSNEGGEEKGLHKSSSKSCDIGENVPLRSYGFWDGSRIQTGLSALPDSAILQAKYPAAFSGYSATSVKTEQQPLQALTNNGDRSLNGLVSAFPTKDGVVDYHSYRSRDGVKMRPFPVDIFSEMQRRNGFDAVSLSSLQQRGRVLVGMNVVGRGGILMGGSCTGVSDPVAAIKMHYAKAEQYVGQPGSTFTREDGSWRGGNGGDLGSRHQEKSCKCNDQRDENQPMAYSYEVVSTAEQKVPMRLSVSTSSAFLRSSSYICFLKPDKSKKKWFQKEESVDVISFLEQSPLDVPAQPPIEDDVKQTEPENEPSELAHLEAAESAVAEAQLAVVVEYPPSPISCRPEMSEETAASVIQTAFRGYTARRALRALKALMRLKTLVQGQSVKRQVASTLKCMQTLTHLQSEIRARRIRMSEENQALQRQLRNKREKDLEKLKFAMDDDWNDSTQSKAQIEAKLLNKHEAAIRRERALAYAYSHQQTWKNSSKTSTPTVMDPNNPHWGWSWLERWMAARPWESQSTTDQPDHISVTSVATRASVVDILQIYARRDQNPSTKLSPKSPTSQKSSQLPKYHSPSTPKALFSSSGRKKTNAANSRIGSWGRDEDIRSITSVKSKLSRRHTIAGSSFRDDESLASLPSVSSYTTPSKAVKNRSRLASSSRIEKKGTMEKGSASAGSAKKQLSFSAFPVKPRRQSSPPIVNTS 2156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31983545 31996787 - CcPI632755_05g023470.1 Cco05g2347 179975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2347 2156 Gene3D - 751 823 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 1446 1474 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 79 120 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 2090 2109 - -
Cco05g2347 2156 SUPERFAMILY Homeodomain-like 758 820 IPR009057 -
Cco05g2347 2156 Coils Coil 395 422 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 966 991 - -
Cco05g2347 2156 Coils Coil 1865 1885 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 1643 1675 - -
Cco05g2347 2156 Pfam Myb-like DNA-binding domain 991 1032 IPR001005 -
Cco05g2347 2156 Pfam Myb-like DNA-binding domain 774 816 IPR001005 -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 58 75 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 121 161 - -
Cco05g2347 2156 ProSiteProfiles SANT domain profile. 987 1038 IPR017884 -
Cco05g2347 2156 ProSiteProfiles IQ motif profile. 1802 1830 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 1446 1461 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 2003 2052 - -
Cco05g2347 2156 CDD SANT 991 1030 IPR001005 -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 1 31 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 44 231 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 2003 2051 - -
Cco05g2347 2156 ProSiteProfiles SANT domain profile. 770 821 IPR017884 -
Cco05g2347 2156 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1660 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 8 31 - -
Cco05g2347 2156 SUPERFAMILY Homeodomain-like 986 1038 IPR009057 -
Cco05g2347 2156 SMART sant 988 1036 IPR001005 -
Cco05g2347 2156 SMART sant 771 819 IPR001005 -
Cco05g2347 2156 Gene3D - 936 1045 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 2090 2156 - -
Cco05g2347 2156 MobiDBLite consensus disorder prediction 180 207 - -
Cco05g2347 2156 ProSiteProfiles Myb-like domain profile. 984 1034 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2347 Cco-Chr5:31983545 Cco09g2240 Cco-Chr9:36699663 1.70E-109 dispersed
Cco09g2255 Cco-Chr9:36837718 Cco05g2347 Cco-Chr5:31983545 1.70E-235 transposed
Cco10g2042 Cco-Chr10:33797420 Cco05g2347 Cco-Chr5:31983545 5.40E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59364 PF00249 Myb_DNA-binding 2.90E-06 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2347 - - - 0.0