Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2351 ATGGCTGATTGTGGAACAGAGCAGCGTACTCTGGAAGATACTTCAACTTGGGCTGTTGCGGTTGTTTGTTTTTTCTTGGTTGTTATTTCAATCTTCATTGAACATGTCATTCATCTCACTGGAAAGTGGCTGGAGAAAAGGCACAAGCCAGCTCTTGTTGAAGCTCTAGAAAAGGTTAAAGCAGAGCTTATGCTGTTGGGATTTATATCCCTACTTCTAACGGTAGGCCAAGATGCTGTCACTCAAATTTGTGTTTCGAAGGAGCTTGCGACAACTTGGCTTCCATGTGCAGCAAAAGCTAAAACAGGAGTAAAAGTTGCGAAGAAAAGTCGTCTTAAACTTCTTGAATTTTTAGATCCTGACTATGGTTCGAGGCGTATTTTAGCTTCAAAAGGAGACGATGCGTGCGCTAAGAGGGGTCAACTTGCTTTCGTGTCTGCATATGGAATCCACCAGCTCCATATTTTCATCTTTGTATTGGCTGTCTTCCATGTTCTATACTGCATCACCACTTTGGCTTTGGGCAGAACAAAGATGAGCAAATGGAAGGCCTGGGAGGATGAGACAAAAACAATTGAATACCAGTACTATAATGATCCAGCAAGATTTAGATTTGCCAGAGATACAACATTTGGACGCCGGCACTTGAGCTTTTGGAGTCGTACACCACTTTCCCTCTGGATTGTTTGTTTCTTCCGACAATTCTTTGGATCAGTAACCAAGGTTGATTACATGACACTGAGGCATGGATTCATCGTTGCACATCTAGCGCCCGGAAGTGAAGTAAAATTTGATTTCCACAAATACATCAGCAGATCTCTCGAAGACGACTTTAAAGTTGTTGTGGGGATTAGTCCAGCAATGTGGCTATTTGCTGTTCTCTTCATCCTAACCAATACAAATGGGTGGTATTCATATCTATGGCTGCCTTTCATCTCCTTAGTTATAATTTTGTTGGTGGGAACGAAGCTCCATGTTATCATAACTCAAATGGGATTGACAATTCAAGAAAGGGGCCACGTTGTGAAGGGTGTTCCCGTCGTTCAGCCCCGGGATGACCTGTTTTGGTTCGGACGTCCGCAACTTATTCTCTTTCTGATTCACTTTGTTCTCTTTATGAATGCATTTCAGCTTGCCTTCTTTGCTTGGACCACATACGCATTTAAGTGGAGAGCTTGCTTCCATCAACGAATTGAAGATATTGCCATCAGACTCTCAATGGGGGTTATCATACAAGTTCTATGCAGTTATGTGACACTCCCACTCTATGCTTTGGTGACTCAGATGGGCTCTAACATGAGACCAACCATTTTCAACGACCGAGTGGCGACGGCATTGAAGAACTGGCACCACTCTGCCAAGAAGAACATGAAGCACCAGCGCAACCCAGACAGTACCTCACCATTCTCAAGCAGGCCAACTACTCCAACTCACGGCATGTCTCCTATTCACCTTCTGCACAAACATCAGCATGGCAGCACATCTCCCAGGCTATCTGATGCCGAACCAGATCGTTGGGACATTGAAGAGTTGCCTCCTTCTTCACACCATAGTAGAGCCCATGATAATCAAGAACAAGAACATTCTGAGACAAATAGAGAACAGGAGATGACAGTTCAACGGCCAAGTTCTACAGAAACTAGTTCCATGACACGTCCTGCTCGCCCTCAACATGAAATCACTAGGAGTCCCTCAGACTTCTCATTTGCCAAATGA 1716 44.17 MADCGTEQRTLEDTSTWAVAVVCFFLVVISIFIEHVIHLTGKWLEKRHKPALVEALEKVKAELMLLGFISLLLTVGQDAVTQICVSKELATTWLPCAAKAKTGVKVAKKSRLKLLEFLDPDYGSRRILASKGDDACAKRGQLAFVSAYGIHQLHIFIFVLAVFHVLYCITTLALGRTKMSKWKAWEDETKTIEYQYYNDPARFRFARDTTFGRRHLSFWSRTPLSLWIVCFFRQFFGSVTKVDYMTLRHGFIVAHLAPGSEVKFDFHKYISRSLEDDFKVVVGISPAMWLFAVLFILTNTNGWYSYLWLPFISLVIILLVGTKLHVIITQMGLTIQERGHVVKGVPVVQPRDDLFWFGRPQLILFLIHFVLFMNAFQLAFFAWTTYAFKWRACFHQRIEDIAIRLSMGVIIQVLCSYVTLPLYALVTQMGSNMRPTIFNDRVATALKNWHHSAKKNMKHQRNPDSTSPFSSRPTTPTHGMSPIHLLHKHQHGSTSPRLSDAEPDRWDIEELPPSSHHSRAHDNQEQEHSETNREQEMTVQRPSSTETSSMTRPARPQHEITRSPSDFSFAK 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32027397 32031487 + CcPI632755_05g023510.1 Cco05g2351 179979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2351 571 MobiDBLite consensus disorder prediction 462 478 - -
Cco05g2351 571 MobiDBLite consensus disorder prediction 451 571 - -
Cco05g2351 571 Pfam Mlo family 8 489 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cco05g2351 571 PANTHER MLO-LIKE PROTEIN 1 4 535 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cco05g2351 571 MobiDBLite consensus disorder prediction 536 571 - -
Cco05g2351 571 MobiDBLite consensus disorder prediction 493 535 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2351 K08472 - - csv:101218929 1087.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2253 Cco-Chr2:35108370 Cco05g2351 Cco-Chr5:32027397 1.10E-191 dispersed
Cco03g0239 Cco-Chr3:2592180 Cco05g2351 Cco-Chr5:32027397 5.70E-99 dispersed
Cco04g2118 Cco-Chr4:35035853 Cco05g2351 Cco-Chr5:32027397 3.30E-110 dispersed
Cco05g2351 Cco-Chr5:32027397 Cco10g0012 Cco-Chr10:197771 8.20E-128 dispersed
Cco05g2351 Cco-Chr5:32027397 Cco03g0237 Cco-Chr3:2541930 1.30E-189 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g491 . . . Bda15g00172 . . Bma03g00332 . . Cmo04g01433 Cma04g01359 . Car04g01437 . . . . . . . . . . . Cla05g02133 Cam05g2289 Cec05g2309 Cco05g2351 Clacu05g2283 Cmu05g2147 Cre05g2268 . . . . . . . Cme10g00061 Blo13g00727 . Bda14g00343 . Bpe04g01877 . . Bma08g00944 . . . . . . . Cpe01g01228 . . . . . . . . . . . . . . . Lsi04g00059 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g2082 . 3 553 MLO family AT5G53760 69.6 3.8e-218 754.6
Cco11g1866 . 5 530 MLO family AT5G53760 67.4 4.0e-207 718.0
Cco05g1118 . 7 466 MLO family AT5G53760 51.3 3.1e-127 452.6
Cco09g2082 . 3 553 MLO family AT1G26700 68.3 1.8e-212 735.7
Cco11g1866 . 1 511 MLO family AT1G26700 66.7 4.1e-201 698.0
Cco03g0237 . 8 536 MLO family AT2G39200 63.9 2.1e-192 669.1
Cco05g2351 . 7 499 MLO family AT2G39200 67.7 1.4e-191 666.4
Cco02g2253 . 8 505 MLO family AT2G39200 67.1 1.5e-190 662.9
Cco02g2253 . 1 416 MLO family AT1G61560 65.9 7.7e-160 560.5
Cco03g0237 . 1 416 MLO family AT1G61560 66.3 4.7e-157 551.2
Cco05g2351 . 7 408 MLO family AT1G61560 65.2 1.6e-152 536.2
Cco04g1876 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Cco04g1876 . 18 490 MLO family AT2G17430 63.4 1.8e-172 602.8
Cco10g0012 . 29 490 MLO family AT2G17430 63.4 1.6e-160 563.1
Cco08g1081 . 4 451 MLO family AT2G17430 54.4 3.1e-132 469.2
Cco04g1876 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Cco10g0012 . 5 574 MLO family AT2G17480 58.6 4.5e-177 618.2
Cco08g1081 . 11 436 MLO family AT2G17480 59.5 4.7e-142 501.9
Cco02g2253 . 8 463 MLO family AT2G17480 50.3 3.3e-124 442.6
Cco08g1081 . 1 366 MLO family AT1G42560 59.6 8.7e-126 447.2
Cco04g1876 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Cco10g0012 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Cco06g0054 . 6 419 MLO family AT4G24250 54.2 6.0e-117 417.9
Cco02g0029 . 43 329 MLO family AT4G24250 51.8 3.8e-79 292.4
Cco04g1876 . 8 387 MLO family AT5G65970 66.8 8.1e-145 510.8
Cco10g0012 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Cco08g1081 . 7 364 MLO family AT5G65970 56.9 2.5e-114 409.5
Cco02g2253 . 2 381 MLO family AT5G65970 51.8 7.4e-106 381.3
Cco03g0237 . 2 381 MLO family AT5G65970 50.7 1.4e-101 367.1
Cco08g1081 . 2 513 MLO family AT2G33670 57.6 1.2e-159 560.1
Cco04g1876 . 28 470 MLO family AT2G33670 62.3 6.7e-158 554.3
Cco10g0012 . 29 471 MLO family AT2G33670 58.7 9.7e-141 497.3
Cco05g2351 . 64 525 MLO family AT1G11310 63.9 1.7e-169 592.8
Cco03g0237 . 63 506 MLO family AT1G11310 64.9 7.5e-165 577.4
Cco02g2253 . 63 520 MLO family AT1G11310 62.7 9.2e-163 570.5
Cco06g0054 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
Cco06g0054 . 1 508 MLO family AT4G02600 72.7 2.6e-213 738.4
Cco05g1118 . 3 560 MLO family AT1G11000 67.3 9.8e-214 740.0
Cco10g0068 . 1 495 MLO family AT1G11000 51.5 1.0e-130 464.2
Cco06g0054 . 1 508 MLO family AT4G02600 72.7 2.6e-213 738.4
Cco05g2351 . 64 525 MLO family AT1G11310 63.9 1.7e-169 592.8
Cco03g0237 . 63 506 MLO family AT1G11310 64.9 7.5e-165 577.4
Cco02g2253 . 63 520 MLO family AT1G11310 62.7 9.2e-163 570.5
Cco05g1118 . 3 560 MLO family AT1G11000 67.3 9.8e-214 740.0
Cco10g0068 . 1 495 MLO family AT1G11000 51.5 1.0e-130 464.2
Cco08g1081 . 2 513 MLO family AT2G33670 57.6 1.2e-159 560.1
Cco04g1876 . 28 470 MLO family AT2G33670 62.3 6.7e-158 554.3
Cco10g0012 . 29 471 MLO family AT2G33670 58.7 9.7e-141 497.3
Cco02g2253 . 1 416 MLO family AT1G61560 65.9 7.7e-160 560.5
Cco03g0237 . 1 416 MLO family AT1G61560 66.3 4.7e-157 551.2
Cco05g2351 . 7 408 MLO family AT1G61560 65.2 1.6e-152 536.2
Cco04g1876 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Cco04g1876 . 18 490 MLO family AT2G17430 63.4 1.8e-172 602.8
Cco10g0012 . 29 490 MLO family AT2G17430 63.4 1.6e-160 563.1
Cco08g1081 . 4 451 MLO family AT2G17430 54.4 3.1e-132 469.2
Cco04g1876 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Cco10g0012 . 5 574 MLO family AT2G17480 58.6 4.5e-177 618.2
Cco08g1081 . 11 436 MLO family AT2G17480 59.5 4.7e-142 501.9
Cco02g2253 . 8 463 MLO family AT2G17480 50.3 3.3e-124 442.6
Cco08g1081 . 1 366 MLO family AT1G42560 59.6 8.7e-126 447.2
Cco04g1876 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Cco10g0012 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Cco04g1876 . 8 387 MLO family AT5G65970 66.8 8.1e-145 510.8
Cco10g0012 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Cco08g1081 . 7 364 MLO family AT5G65970 56.9 2.5e-114 409.5
Cco02g2253 . 2 381 MLO family AT5G65970 51.8 7.4e-106 381.3
Cco03g0237 . 2 381 MLO family AT5G65970 50.7 1.4e-101 367.1
Cco09g2082 . 3 553 MLO family AT5G53760 69.6 3.8e-218 754.6
Cco11g1866 . 5 530 MLO family AT5G53760 67.4 4.0e-207 718.0
Cco05g1118 . 7 466 MLO family AT5G53760 51.3 3.1e-127 452.6
Cco03g0237 . 8 536 MLO family AT2G39200 63.9 2.1e-192 669.1
Cco05g2351 . 7 499 MLO family AT2G39200 67.7 1.4e-191 666.4
Cco02g2253 . 8 505 MLO family AT2G39200 67.1 1.5e-190 662.9
Cco06g0054 . 6 419 MLO family AT4G24250 54.2 6.0e-117 417.9
Cco02g0029 . 43 329 MLO family AT4G24250 51.8 3.8e-79 292.4
Cco09g2082 . 3 553 MLO family AT1G26700 68.3 1.8e-212 735.7
Cco11g1866 . 1 511 MLO family AT1G26700 66.7 4.1e-201 698.0
Cco06g0054 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005733 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 3 0 39