Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2361 | ATGGCCAAAGACGACGCCACCGCCGCGCGACGGTTCTCCGGCAAGGATTACCACGACCCTCCGCCGGCGCCGCTGTTCGACGCGGCGGAGCTCAGCAAGTGGTCCTTTTACAGGGCCCTCATTGCCGAGTTCATTGCCACTCTTCTTTTTCTCTATGTCACCATATTGACTGTGATTGGCTACAGCAGCCAGACCGATACCAGTAAGCCCGGCGCCGACGCTTGCGATGGCGTCGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATCTTCGTCCTTGTCTACTGCACTGCCGGCATTTCAGGTGGGCACATAAACCCGGCGGTGACGTTCGGGCTATTCTTGGCCCGTAAAGTGTCGTTGGTGCGGGCAGTGGCGTACATGGTGGCTCAGTGCTTAGGAGCCATATGCGGGACGGGGCTAGTGAAAGCGTTCCAAAAGGCTTACTTCAACAAGTACGGCGGCGGTGCGAACCAGCTCGCCCATGGCTACACCAAAGGCACCGGCTTGGGTGCTGAAATCATCGGTACCTTTATCTTGGTTTACACCGTCTTCTCCGCCACTGATCCCAAGAGAAACGCCAGAGACTCCCATGTTCCTGTATTGGCTCCCCTCCCAATTGGATTTGCTGTGTTTATGGTTCACTTGGCCACCATCCCCATTACCGGCACAAGCATCAACCCTGCAAGAAGCTTCGGCCCTGCTGTTATCTTAAACAAGGATAAACCTTGGGATGAACATTGGATATTCTGGGTTGGGCCATTCGTCGGAGCCGCCATCGCAGCCTTCTACCATCAGTTCATTTTGAGGGCAGGCGCCGCCAAGGCTCTCGGCTCTTTCAGGAGCACCCCCTCCGTTTGA | 864 | 56.71 | MAKDDATAARRFSGKDYHDPPPAPLFDAAELSKWSFYRALIAEFIATLLFLYVTILTVIGYSSQTDTSKPGADACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGTGLVKAFQKAYFNKYGGGANQLAHGYTKGTGLGAEIIGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNKDKPWDEHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSTPSV | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32129236 | 32134223 | - | CcPI632755_05g023610.1 | Cco05g2361 | 179989 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2361 | 287 | NCBIfam | MIP family channel protein | 42 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco05g2361 | 287 | SUPERFAMILY | Aquaporin-like | 30 | 271 | IPR023271 | - | |
Cco05g2361 | 287 | CDD | MIP | 38 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco05g2361 | 287 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - | |
Cco05g2361 | 287 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 4 | 283 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
Cco05g2361 | 287 | FunFam | Probable aquaporin PIP1-2 | 23 | 285 | - | - | |
Cco05g2361 | 287 | Gene3D | Glycerol uptake facilitator protein. | 23 | 287 | IPR023271 | - | |
Cco05g2361 | 287 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco05g2361 | 287 | PRINTS | Major intrinsic protein family signature | 173 | 191 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco05g2361 | 287 | PRINTS | Major intrinsic protein family signature | 249 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco05g2361 | 287 | PRINTS | Major intrinsic protein family signature | 38 | 57 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco05g2361 | 287 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco05g2361 | 287 | PRINTS | Major intrinsic protein family signature | 209 | 231 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco05g2361 | 287 | Pfam | Major intrinsic protein | 30 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1301 | Cco-Chr2:24748590 | Cco05g2361 | Cco-Chr5:32129236 | 1.70E-105 | dispersed | |
Cco04g1098 | Cco-Chr4:26405713 | Cco05g2361 | Cco-Chr5:32129236 | 2.50E-133 | dispersed | |
Cco04g1099 | Cco-Chr4:26416435 | Cco05g2361 | Cco-Chr5:32129236 | 3.80E-134 | dispersed | |
Cco04g1150 | Cco-Chr4:26865090 | Cco05g2361 | Cco-Chr5:32129236 | 3.20E-28 | dispersed | |
Cco05g2361 | Cco-Chr5:32129236 | Cco07g0415 | Cco-Chr7:4549388 | 2.10E-108 | dispersed | |
Cco05g0635 | Cco-Chr5:5170595 | Cco05g2361 | Cco-Chr5:32129236 | 1.30E-14 | transposed | |
Cco10g2017 | Cco-Chr10:33662070 | Cco05g2361 | Cco-Chr5:32129236 | 9.60E-117 | wgd | |
Cco05g2361 | Cco-Chr5:32129236 | Cco08g0888 | Cco-Chr8:20756617 | 6.80E-131 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2361 | K09872 | - | csv:101204956 | 555.058 |