Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2361 ATGGCCAAAGACGACGCCACCGCCGCGCGACGGTTCTCCGGCAAGGATTACCACGACCCTCCGCCGGCGCCGCTGTTCGACGCGGCGGAGCTCAGCAAGTGGTCCTTTTACAGGGCCCTCATTGCCGAGTTCATTGCCACTCTTCTTTTTCTCTATGTCACCATATTGACTGTGATTGGCTACAGCAGCCAGACCGATACCAGTAAGCCCGGCGCCGACGCTTGCGATGGCGTCGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATCTTCGTCCTTGTCTACTGCACTGCCGGCATTTCAGGTGGGCACATAAACCCGGCGGTGACGTTCGGGCTATTCTTGGCCCGTAAAGTGTCGTTGGTGCGGGCAGTGGCGTACATGGTGGCTCAGTGCTTAGGAGCCATATGCGGGACGGGGCTAGTGAAAGCGTTCCAAAAGGCTTACTTCAACAAGTACGGCGGCGGTGCGAACCAGCTCGCCCATGGCTACACCAAAGGCACCGGCTTGGGTGCTGAAATCATCGGTACCTTTATCTTGGTTTACACCGTCTTCTCCGCCACTGATCCCAAGAGAAACGCCAGAGACTCCCATGTTCCTGTATTGGCTCCCCTCCCAATTGGATTTGCTGTGTTTATGGTTCACTTGGCCACCATCCCCATTACCGGCACAAGCATCAACCCTGCAAGAAGCTTCGGCCCTGCTGTTATCTTAAACAAGGATAAACCTTGGGATGAACATTGGATATTCTGGGTTGGGCCATTCGTCGGAGCCGCCATCGCAGCCTTCTACCATCAGTTCATTTTGAGGGCAGGCGCCGCCAAGGCTCTCGGCTCTTTCAGGAGCACCCCCTCCGTTTGA 864 56.71 MAKDDATAARRFSGKDYHDPPPAPLFDAAELSKWSFYRALIAEFIATLLFLYVTILTVIGYSSQTDTSKPGADACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGTGLVKAFQKAYFNKYGGGANQLAHGYTKGTGLGAEIIGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNKDKPWDEHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSTPSV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32129236 32134223 - CcPI632755_05g023610.1 Cco05g2361 179989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2361 287 NCBIfam MIP family channel protein 42 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g2361 287 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Cco05g2361 287 CDD MIP 38 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g2361 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cco05g2361 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cco05g2361 287 FunFam Probable aquaporin PIP1-2 23 285 - -
Cco05g2361 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Cco05g2361 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g2361 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g2361 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g2361 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g2361 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g2361 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g2361 287 Pfam Major intrinsic protein 30 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1301 Cco-Chr2:24748590 Cco05g2361 Cco-Chr5:32129236 1.70E-105 dispersed
Cco04g1098 Cco-Chr4:26405713 Cco05g2361 Cco-Chr5:32129236 2.50E-133 dispersed
Cco04g1099 Cco-Chr4:26416435 Cco05g2361 Cco-Chr5:32129236 3.80E-134 dispersed
Cco04g1150 Cco-Chr4:26865090 Cco05g2361 Cco-Chr5:32129236 3.20E-28 dispersed
Cco05g2361 Cco-Chr5:32129236 Cco07g0415 Cco-Chr7:4549388 2.10E-108 dispersed
Cco05g0635 Cco-Chr5:5170595 Cco05g2361 Cco-Chr5:32129236 1.30E-14 transposed
Cco10g2017 Cco-Chr10:33662070 Cco05g2361 Cco-Chr5:32129236 9.60E-117 wgd
Cco05g2361 Cco-Chr5:32129236 Cco08g0888 Cco-Chr8:20756617 6.80E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2361 K09872 - csv:101204956 555.058