Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2381 ATGGGTTCGTCGGAGAAGGAGCTGAAAGATATAATGGTGAATCAATTGCCAGAGTCTGTGAGGGAGATTTCAGGGCTTCCCGAGTATAACGGCATCTGTAAGAAGATGTATGGAGACTTGATTCGAAGGGTCAAATTATTGAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGATGAACTTGGATTAGATGTTCTTAAGAGCTTGGAGTTGCTCAAAATTGCTTTGGATTCTGCCATAGAGCTTCTTGGGTCGGTCAGCCGAGGAAGCAAGCTATTTCAGGCTTCGCAGTTGGAAAAGATTGTGCTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCAGACGAGGTTCGGGAACAGACTGAACTTGTTCATGCACAATTCAAACGAGCGAAAGAGAGAGTAAATGTAGCTGATGCACAGTTAGACAAGGATTTAGCCATATTACAAGAAGAAAAAGATCCTGACCCTGCAATATTGAAGAGAATTTCTGAGAAGCTGCATCTTCGGACTATAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGCTGGTGATCTCGAGCGATGGAGACCCTCAGGGTGTTTTTGGAAAATTGTTGTCCGTTTTAAAGAAGCTGAAGGATTTTGTACAATCAGAAAACCCAGCAGTTGAAACTTCTCAAGAAGAAAAAGCTACCACCATTAAACACAGATCTCCTGTCATCCCGGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCGGTCATCGTCTCCACCGGGCAGACTTATGAGAGATCGTGCATTCAGAAATGGCTGGATGCAGGGCACAAAACCTGTCCAAAATCTCAACAAGCTTTATCACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTATGGTGTGAGAACAATGGCATTGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAACAAGAAACCTGGAAACAATGTTTCAGACTGTGATCGAGCGGCCATCGATGCCTTACTTGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGGTTACTAGCAAAGAGGAATTCGGATAACAGAATTTGTATTGCTGAGGCAGGAGCCATTCCGTTCCTTGTTGAACTATTATCGTCAAATGATACTAGGACCCAGGAGCATGCGGTTACAGCATTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACAATTGTTGATTTACGAGCCATACCCGCCATAGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTATCCGTGATAGACGAGAACAAGGTTGCGATCGGAGCAGCCGGGGCAATTCCTGCTCTTATTAGTTTGCTTCGAGAAGGTACTCCGAGAGGAAAGAAGGACGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGCATCGTGAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGAATGGTTGATGAAGCTCTAGCCATTCTAGCCATTCTTGCAACTCACCATGAAGGAAAGATGGGAATAGGGGAAGCCGAGCCGATGGCAATTCTGTTGGAGTTCATTAGAACTGGTTCTCCACGGAACCGGGAGAACGCTGCTGCCGTCTTGTGGTCGCTTTGCAGTACTGATTTCGAGCAGTTGAAGCTGGCTAGGGAACATGGGGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGAACAGACAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTCTTTCAACGCTTCGATGGACCATCAGCTAATTTATAA 1893 44.27 MGSSEKELKDIMVNQLPESVREISGLPEYNGICKKMYGDLIRRVKLLSPLFEELRDGEDELGLDVLKSLELLKIALDSAIELLGSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVNVADAQLDKDLAILQEEKDPDPAILKRISEKLHLRTINDLKKESLAIHELVISSDGDPQGVFGKLLSVLKKLKDFVQSENPAVETSQEEKATTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALSHTALTPNYVLKSLIALWCENNGIELPRKQGSCRNKKPGNNVSDCDRAAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKMGIGEAEPMAILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSANL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32309586 32312250 + CcPI632755_05g023810.1 Cco05g2381 180009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2381 630 CDD RING-Ubox_PUB 250 302 IPR045210 -
Cco05g2381 630 FunFam RING-type E3 ubiquitin transferase 249 322 - -
Cco05g2381 630 Pfam U-box domain 249 319 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g2381 630 SUPERFAMILY RING/U-box 247 323 - -
Cco05g2381 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 FunFam RING-type E3 ubiquitin transferase 9 122 - -
Cco05g2381 630 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g2381 630 Gene3D - 12 122 IPR036537 GO:0007166(InterPro)
Cco05g2381 630 SMART arm_5 376 416 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 SMART arm_5 499 539 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 SMART arm_5 458 498 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 SMART arm_5 417 457 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 SMART arm_5 540 580 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 FunFam RING-type E3 ubiquitin transferase 332 625 - -
Cco05g2381 630 PANTHER U BOX DOMAIN-CONTAINING 34 622 - -
Cco05g2381 630 Gene3D - 333 620 IPR011989 -
Cco05g2381 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 SMART Ubox_2 252 315 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g2381 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 322 IPR013083 -
Cco05g2381 630 SUPERFAMILY ARM repeat 346 620 IPR016024 -
Cco05g2381 630 Pfam Armadillo/beta-catenin-like repeat 417 456 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0639 Cco-Chr1:6553085 Cco05g2381 Cco-Chr5:32309586 2.70E-50 dispersed
Cco03g0164 Cco-Chr3:1593850 Cco05g2381 Cco-Chr5:32309586 5.40E-116 dispersed
Cco04g1480 Cco-Chr4:30239826 Cco05g2381 Cco-Chr5:32309586 1.30E-17 dispersed
Cco04g1925 Cco-Chr4:33650683 Cco05g2381 Cco-Chr5:32309586 3.20E-13 dispersed
Cco05g2381 Cco-Chr5:32309586 Cco07g0680 Cco-Chr7:11764052 1.20E-63 dispersed
Cco05g2381 Cco-Chr5:32309586 Cco02g2163 Cco-Chr2:34366997 1.10E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2381 K27628 - csv:101221065 1109.36