Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2381 ATGGGTTCGTCGGAGAAGGAGCTGAAAGATATAATGGTGAATCAATTGCCAGAGTCTGTGAGGGAGATTTCAGGGCTTCCCGAGTATAACGGCATCTGTAAGAAGATGTATGGAGACTTGATTCGAAGGGTCAAATTATTGAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGATGAACTTGGATTAGATGTTCTTAAGAGCTTGGAGTTGCTCAAAATTGCTTTGGATTCTGCCATAGAGCTTCTTGGGTCGGTCAGCCGAGGAAGCAAGCTATTTCAGGCTTCGCAGTTGGAAAAGATTGTGCTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCAGACGAGGTTCGGGAACAGACTGAACTTGTTCATGCACAATTCAAACGAGCGAAAGAGAGAGTAAATGTAGCTGATGCACAGTTAGACAAGGATTTAGCCATATTACAAGAAGAAAAAGATCCTGACCCTGCAATATTGAAGAGAATTTCTGAGAAGCTGCATCTTCGGACTATAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGCTGGTGATCTCGAGCGATGGAGACCCTCAGGGTGTTTTTGGAAAATTGTTGTCCGTTTTAAAGAAGCTGAAGGATTTTGTACAATCAGAAAACCCAGCAGTTGAAACTTCTCAAGAAGAAAAAGCTACCACCATTAAACACAGATCTCCTGTCATCCCGGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCGGTCATCGTCTCCACCGGGCAGACTTATGAGAGATCGTGCATTCAGAAATGGCTGGATGCAGGGCACAAAACCTGTCCAAAATCTCAACAAGCTTTATCACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTATGGTGTGAGAACAATGGCATTGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAACAAGAAACCTGGAAACAATGTTTCAGACTGTGATCGAGCGGCCATCGATGCCTTACTTGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGGTTACTAGCAAAGAGGAATTCGGATAACAGAATTTGTATTGCTGAGGCAGGAGCCATTCCGTTCCTTGTTGAACTATTATCGTCAAATGATACTAGGACCCAGGAGCATGCGGTTACAGCATTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACAATTGTTGATTTACGAGCCATACCCGCCATAGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTATCCGTGATAGACGAGAACAAGGTTGCGATCGGAGCAGCCGGGGCAATTCCTGCTCTTATTAGTTTGCTTCGAGAAGGTACTCCGAGAGGAAAGAAGGACGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGCATCGTGAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGAATGGTTGATGAAGCTCTAGCCATTCTAGCCATTCTTGCAACTCACCATGAAGGAAAGATGGGAATAGGGGAAGCCGAGCCGATGGCAATTCTGTTGGAGTTCATTAGAACTGGTTCTCCACGGAACCGGGAGAACGCTGCTGCCGTCTTGTGGTCGCTTTGCAGTACTGATTTCGAGCAGTTGAAGCTGGCTAGGGAACATGGGGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGAACAGACAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTCTTTCAACGCTTCGATGGACCATCAGCTAATTTATAA 1893 44.27 MGSSEKELKDIMVNQLPESVREISGLPEYNGICKKMYGDLIRRVKLLSPLFEELRDGEDELGLDVLKSLELLKIALDSAIELLGSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVNVADAQLDKDLAILQEEKDPDPAILKRISEKLHLRTINDLKKESLAIHELVISSDGDPQGVFGKLLSVLKKLKDFVQSENPAVETSQEEKATTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALSHTALTPNYVLKSLIALWCENNGIELPRKQGSCRNKKPGNNVSDCDRAAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKMGIGEAEPMAILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSANL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32309586 32312250 + CcPI632755_05g023810.1 Cco05g2381 180009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2381 630 CDD RING-Ubox_PUB 250 302 IPR045210 -
Cco05g2381 630 FunFam RING-type E3 ubiquitin transferase 249 322 - -
Cco05g2381 630 Pfam U-box domain 249 319 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g2381 630 SUPERFAMILY RING/U-box 247 323 - -
Cco05g2381 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 FunFam RING-type E3 ubiquitin transferase 9 122 - -
Cco05g2381 630 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g2381 630 Gene3D - 12 122 IPR036537 GO:0007166(InterPro)
Cco05g2381 630 SMART arm_5 376 416 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 SMART arm_5 499 539 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 SMART arm_5 458 498 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 SMART arm_5 417 457 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 SMART arm_5 540 580 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 FunFam RING-type E3 ubiquitin transferase 332 625 - -
Cco05g2381 630 PANTHER U BOX DOMAIN-CONTAINING 34 622 - -
Cco05g2381 630 Gene3D - 333 620 IPR011989 -
Cco05g2381 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 SMART Ubox_2 252 315 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g2381 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 322 IPR013083 -
Cco05g2381 630 SUPERFAMILY ARM repeat 346 620 IPR016024 -
Cco05g2381 630 Pfam Armadillo/beta-catenin-like repeat 417 456 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515(InterPro)
Cco05g2381 630 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2381 K27628 - - csv:101221065 1109.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0639 Cco-Chr1:6553085 Cco05g2381 Cco-Chr5:32309586 2.70E-50 dispersed
Cco03g0164 Cco-Chr3:1593850 Cco05g2381 Cco-Chr5:32309586 5.40E-116 dispersed
Cco04g1480 Cco-Chr4:30239826 Cco05g2381 Cco-Chr5:32309586 1.30E-17 dispersed
Cco04g1925 Cco-Chr4:33650683 Cco05g2381 Cco-Chr5:32309586 3.20E-13 dispersed
Cco05g2381 Cco-Chr5:32309586 Cco07g0680 Cco-Chr7:11764052 1.20E-63 dispersed
Cco05g2381 Cco-Chr5:32309586 Cco02g2163 Cco-Chr2:34366997 1.10E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g546 Blo04g00162 . . . . . . . . Cmo04g01454 Cma04g01383 Cma18g00906 Car04g01459 Car18g00828 . . Cpe09g00408 . . . . . . . Cla05g02163 Cam05g2319 Cec05g2340 Cco05g2381 Clacu05g2310 Cmu05g2175 Cre05g2297 Cone1ag1367 Cone5ag0357 . . . . Chy10g01301 Cme10g00093 . Blo04g00330 Bda14g00363 . . . . . . . . . . . . Cpe01g01250 . . . . . . . . . . . . . . . Lsi04g00088 Csa05g02787 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1534 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cco02g1344 . 296 940 U-box Gene Family AT2G23140 66.2 1.4e-123 440.7
Cco08g1897 . 1 780 U-box Gene Family AT1G24330 59.8 1.3e-245 846.3
Cco11g1436 . 1 755 U-box Gene Family AT1G24330 58.2 1.0e-229 793.5
Cco08g1897 . 1 779 U-box Gene Family AT1G67530 59.8 2.8e-243 838.6
Cco11g1436 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Cco04g2025 . 1 362 U-box Gene Family AT4G21350 61.8 7.0e-120 427.6
Cco07g0211 . 135 455 U-box Gene Family AT3G07360 54.6 5.2e-79 291.6
Cco07g0680 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cco01g0639 . 1067 1266 U-box Gene Family AT1G71020 55.4 1.5e-53 207.6
Cco03g0164 . 276 445 U-box Gene Family AT1G71020 57.8 9.2e-48 188.3
Cco05g2381 . 249 414 U-box Gene Family AT1G71020 58.0 4.6e-47 186.0
Cco02g2163 . 255 425 U-box Gene Family AT1G71020 57.6 1.7e-46 184.1
Cco07g0680 . 16 656 U-box Gene Family AT1G23030 56.6 2.8e-110 396.4
Cco01g0639 . 853 1456 U-box Gene Family AT1G23030 51.9 3.3e-82 303.1
Cco03g0164 . 111 650 U-box Gene Family AT2G28830 59.7 2.3e-101 366.7
Cco02g2163 . 93 635 U-box Gene Family AT2G28830 50.6 8.2e-99 358.2
Cco03g0164 . 19 688 U-box Gene Family AT3G46510 67.8 1.9e-168 589.7
Cco02g2163 . 3 638 U-box Gene Family AT3G46510 66.4 2.0e-157 553.1
Cco05g2381 . 16 623 U-box Gene Family AT3G46510 58.8 3.9e-121 432.6
Cco05g2381 . 12 625 U-box Gene Family AT3G54850 68.5 6.7e-163 571.2
Cco02g2163 . 13 628 U-box Gene Family AT3G54850 57.1 5.7e-114 408.7
Cco02g1080 . 92 644 U-box Gene Family AT5G42340 64.0 9.5e-128 454.5
Cco04g0823 . 9 669 U-box Gene Family AT5G01830 57.4 1.5e-197 686.4
Cco03g0707 . 1 714 U-box Gene Family AT1G29340 67.9 7.2e-246 847.0
Cco05g1300 . 27 405 U-box Gene Family AT5G37490 51.8 7.2e-100 361.3
Cco04g0773 . 4 422 U-box Gene Family AT3G52450 51.9 6.9e-119 424.5
Cco10g1817 . 1 403 U-box Gene Family AT3G52450 50.5 2.3e-114 409.5
Cco10g1817 . 1 403 U-box Gene Family AT2G35930 55.1 1.0e-119 427.2
Cco04g0773 . 4 422 U-box Gene Family AT2G35930 50.8 1.2e-115 413.7
Cco05g1175 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cco05g1175 . 1 424 U-box Gene Family AT1G49780 64.6 6.0e-152 534.3
Cco04g1311 . 1 407 U-box Gene Family AT5G64660 53.7 2.1e-120 429.5
Cco04g1311 . 1 407 U-box Gene Family AT5G09800 50.6 5.4e-105 378.3
Cco08g1844 . 1 454 U-box Gene Family AT3G49810 63.2 1.8e-154 542.7
Cco05g2930 . 1 454 U-box Gene Family AT3G49810 62.8 5.8e-153 537.7
Cco08g1844 . 1 454 U-box Gene Family AT5G65920 64.3 3.0e-154 542.0
Cco05g2930 . 1 454 U-box Gene Family AT5G65920 61.5 8.0e-147 517.3
Cco05g0188 . 1 872 U-box Gene Family AT2G45910 52.9 3.0e-235 812.0
Cco01g0483 . 68 847 U-box Gene Family AT4G25160 50.4 1.9e-213 739.6
Cco09g2079 . 1 551 U-box Gene Family AT5G40140 53.9 3.3e-94 342.8
Cco01g1435 . 29 498 U-box Gene Family AT5G40140 51.9 4.0e-55 213.0
Cco08g1083 . 1 516 U-box Gene Family AT1G76390 64.3 3.3e-175 612.5
Cco08g1086 . 26 312 U-box Gene Family AT1G76390 55.6 2.1e-84 310.8
Cco08g1083 . 1 516 U-box Gene Family AT1G20780 63.8 3.2e-178 622.5
Cco08g1086 . 35 312 U-box Gene Family AT1G20780 57.7 3.3e-90 330.1
Cco08g1897 . 1 782 U-box Gene Family AT1G27910 62.8 6.4e-269 923.7
Cco11g1436 . 1 767 U-box Gene Family AT1G27910 62.3 1.5e-262 902.5
Cco04g1512 . 1 592 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cco05g0251 . 657 814 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cco10g1866 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cco04g1594 . 48 845 U-box Gene Family AT5G65500 50.1 5.9e-209 724.5
Cco05g0459 . 1 517 U-box Gene Family AT1G04510 74.4 4.0e-222 767.7
Cco05g0459 . 1 486 U-box Gene Family AT2G33340 73.6 3.6e-209 724.5
Cco07g0210 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Cco10g1534 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cco02g1344 . 296 940 U-box Gene Family AT2G23140 66.2 1.4e-123 440.7
Cco08g1897 . 1 780 U-box Gene Family AT1G24330 59.8 1.3e-245 846.3
Cco11g1436 . 1 755 U-box Gene Family AT1G24330 58.2 1.0e-229 793.5
Cco08g1897 . 1 779 U-box Gene Family AT1G67530 59.8 2.8e-243 838.6
Cco11g1436 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Cco04g2025 . 1 362 U-box Gene Family AT4G21350 61.8 7.0e-120 427.6
Cco07g0211 . 135 455 U-box Gene Family AT3G07360 54.6 5.2e-79 291.6
Cco07g0680 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cco01g0639 . 1067 1266 U-box Gene Family AT1G71020 55.4 1.5e-53 207.6
Cco03g0164 . 276 445 U-box Gene Family AT1G71020 57.8 9.2e-48 188.3
Cco05g2381 . 249 414 U-box Gene Family AT1G71020 58.0 4.6e-47 186.0
Cco02g2163 . 255 425 U-box Gene Family AT1G71020 57.6 1.7e-46 184.1
Cco07g0680 . 16 656 U-box Gene Family AT1G23030 56.6 2.8e-110 396.4
Cco01g0639 . 853 1456 U-box Gene Family AT1G23030 51.9 3.3e-82 303.1
Cco03g0164 . 111 650 U-box Gene Family AT2G28830 59.7 2.3e-101 366.7
Cco02g2163 . 93 635 U-box Gene Family AT2G28830 50.6 8.2e-99 358.2
Cco03g0164 . 19 688 U-box Gene Family AT3G46510 67.8 1.9e-168 589.7
Cco02g2163 . 3 638 U-box Gene Family AT3G46510 66.4 2.0e-157 553.1
Cco05g2381 . 16 623 U-box Gene Family AT3G46510 58.8 3.9e-121 432.6
Cco05g2381 . 12 625 U-box Gene Family AT3G54850 68.5 6.7e-163 571.2
Cco02g2163 . 13 628 U-box Gene Family AT3G54850 57.1 5.7e-114 408.7
Cco02g1080 . 92 644 U-box Gene Family AT5G42340 64.0 9.5e-128 454.5
Cco04g0823 . 9 669 U-box Gene Family AT5G01830 57.4 1.5e-197 686.4
Cco03g0707 . 1 714 U-box Gene Family AT1G29340 67.9 7.2e-246 847.0
Cco05g1300 . 27 405 U-box Gene Family AT5G37490 51.8 7.2e-100 361.3
Cco04g0773 . 4 422 U-box Gene Family AT3G52450 51.9 6.9e-119 424.5
Cco10g1817 . 1 403 U-box Gene Family AT3G52450 50.5 2.3e-114 409.5
Cco10g1817 . 1 403 U-box Gene Family AT2G35930 55.1 1.0e-119 427.2
Cco04g0773 . 4 422 U-box Gene Family AT2G35930 50.8 1.2e-115 413.7
Cco05g1175 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cco05g1175 . 1 424 U-box Gene Family AT1G49780 64.6 6.0e-152 534.3
Cco04g1311 . 1 407 U-box Gene Family AT5G64660 53.7 2.1e-120 429.5
Cco04g1311 . 1 407 U-box Gene Family AT5G09800 50.6 5.4e-105 378.3
Cco08g1844 . 1 454 U-box Gene Family AT3G49810 63.2 1.8e-154 542.7
Cco05g2930 . 1 454 U-box Gene Family AT3G49810 62.8 5.8e-153 537.7
Cco08g1844 . 1 454 U-box Gene Family AT5G65920 64.3 3.0e-154 542.0
Cco05g2930 . 1 454 U-box Gene Family AT5G65920 61.5 8.0e-147 517.3
Cco05g0188 . 1 872 U-box Gene Family AT2G45910 52.9 3.0e-235 812.0
Cco01g0483 . 68 847 U-box Gene Family AT4G25160 50.4 1.9e-213 739.6
Cco09g2079 . 1 551 U-box Gene Family AT5G40140 53.9 3.3e-94 342.8
Cco01g1435 . 29 498 U-box Gene Family AT5G40140 51.9 4.0e-55 213.0
Cco08g1083 . 1 516 U-box Gene Family AT1G76390 64.3 3.3e-175 612.5
Cco08g1086 . 26 312 U-box Gene Family AT1G76390 55.6 2.1e-84 310.8
Cco08g1083 . 1 516 U-box Gene Family AT1G20780 63.8 3.2e-178 622.5
Cco08g1086 . 35 312 U-box Gene Family AT1G20780 57.7 3.3e-90 330.1
Cco08g1897 . 1 782 U-box Gene Family AT1G27910 62.8 6.4e-269 923.7
Cco11g1436 . 1 767 U-box Gene Family AT1G27910 62.3 1.5e-262 902.5
Cco04g1512 . 1 592 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cco05g0251 . 657 814 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cco10g1866 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cco04g1594 . 48 845 U-box Gene Family AT5G65500 50.1 5.9e-209 724.5
Cco05g0459 . 1 517 U-box Gene Family AT1G04510 74.4 4.0e-222 767.7
Cco05g0459 . 1 486 U-box Gene Family AT2G33340 73.6 3.6e-209 724.5
Cco07g0210 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010303 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32