Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2381 | ATGGGTTCGTCGGAGAAGGAGCTGAAAGATATAATGGTGAATCAATTGCCAGAGTCTGTGAGGGAGATTTCAGGGCTTCCCGAGTATAACGGCATCTGTAAGAAGATGTATGGAGACTTGATTCGAAGGGTCAAATTATTGAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGATGAACTTGGATTAGATGTTCTTAAGAGCTTGGAGTTGCTCAAAATTGCTTTGGATTCTGCCATAGAGCTTCTTGGGTCGGTCAGCCGAGGAAGCAAGCTATTTCAGGCTTCGCAGTTGGAAAAGATTGTGCTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCAGACGAGGTTCGGGAACAGACTGAACTTGTTCATGCACAATTCAAACGAGCGAAAGAGAGAGTAAATGTAGCTGATGCACAGTTAGACAAGGATTTAGCCATATTACAAGAAGAAAAAGATCCTGACCCTGCAATATTGAAGAGAATTTCTGAGAAGCTGCATCTTCGGACTATAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGCTGGTGATCTCGAGCGATGGAGACCCTCAGGGTGTTTTTGGAAAATTGTTGTCCGTTTTAAAGAAGCTGAAGGATTTTGTACAATCAGAAAACCCAGCAGTTGAAACTTCTCAAGAAGAAAAAGCTACCACCATTAAACACAGATCTCCTGTCATCCCGGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCGGTCATCGTCTCCACCGGGCAGACTTATGAGAGATCGTGCATTCAGAAATGGCTGGATGCAGGGCACAAAACCTGTCCAAAATCTCAACAAGCTTTATCACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTATGGTGTGAGAACAATGGCATTGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAACAAGAAACCTGGAAACAATGTTTCAGACTGTGATCGAGCGGCCATCGATGCCTTACTTGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGGTTACTAGCAAAGAGGAATTCGGATAACAGAATTTGTATTGCTGAGGCAGGAGCCATTCCGTTCCTTGTTGAACTATTATCGTCAAATGATACTAGGACCCAGGAGCATGCGGTTACAGCATTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACAATTGTTGATTTACGAGCCATACCCGCCATAGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTATCCGTGATAGACGAGAACAAGGTTGCGATCGGAGCAGCCGGGGCAATTCCTGCTCTTATTAGTTTGCTTCGAGAAGGTACTCCGAGAGGAAAGAAGGACGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGCATCGTGAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGAATGGTTGATGAAGCTCTAGCCATTCTAGCCATTCTTGCAACTCACCATGAAGGAAAGATGGGAATAGGGGAAGCCGAGCCGATGGCAATTCTGTTGGAGTTCATTAGAACTGGTTCTCCACGGAACCGGGAGAACGCTGCTGCCGTCTTGTGGTCGCTTTGCAGTACTGATTTCGAGCAGTTGAAGCTGGCTAGGGAACATGGGGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGAACAGACAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTCTTTCAACGCTTCGATGGACCATCAGCTAATTTATAA | 1893 | 44.27 | MGSSEKELKDIMVNQLPESVREISGLPEYNGICKKMYGDLIRRVKLLSPLFEELRDGEDELGLDVLKSLELLKIALDSAIELLGSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVNVADAQLDKDLAILQEEKDPDPAILKRISEKLHLRTINDLKKESLAIHELVISSDGDPQGVFGKLLSVLKKLKDFVQSENPAVETSQEEKATTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALSHTALTPNYVLKSLIALWCENNGIELPRKQGSCRNKKPGNNVSDCDRAAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKMGIGEAEPMAILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSANL | 630 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32309586 | 32312250 | + | CcPI632755_05g023810.1 | Cco05g2381 | 180009 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2381 | 630 | CDD | RING-Ubox_PUB | 250 | 302 | IPR045210 | - | |
Cco05g2381 | 630 | FunFam | RING-type E3 ubiquitin transferase | 249 | 322 | - | - | |
Cco05g2381 | 630 | Pfam | U-box domain | 249 | 319 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco05g2381 | 630 | SUPERFAMILY | RING/U-box | 247 | 323 | - | - | |
Cco05g2381 | 630 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 428 | 470 | IPR000225 | GO:0005515(InterPro) | |
Cco05g2381 | 630 | FunFam | RING-type E3 ubiquitin transferase | 9 | 122 | - | - | |
Cco05g2381 | 630 | ProSiteProfiles | U-box domain profile. | 248 | 322 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco05g2381 | 630 | Gene3D | - | 12 | 122 | IPR036537 | GO:0007166(InterPro) | |
Cco05g2381 | 630 | SMART | arm_5 | 376 | 416 | IPR000225 | GO:0005515(InterPro) | |
Cco05g2381 | 630 | SMART | arm_5 | 499 | 539 | IPR000225 | GO:0005515(InterPro) | |
Cco05g2381 | 630 | SMART | arm_5 | 458 | 498 | IPR000225 | GO:0005515(InterPro) | |
Cco05g2381 | 630 | SMART | arm_5 | 417 | 457 | IPR000225 | GO:0005515(InterPro) | |
Cco05g2381 | 630 | SMART | arm_5 | 540 | 580 | IPR000225 | GO:0005515(InterPro) | |
Cco05g2381 | 630 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 469 | 511 | IPR000225 | GO:0005515(InterPro) | |
Cco05g2381 | 630 | FunFam | RING-type E3 ubiquitin transferase | 332 | 625 | - | - | |
Cco05g2381 | 630 | PANTHER | U BOX DOMAIN-CONTAINING | 34 | 622 | - | - | |
Cco05g2381 | 630 | Gene3D | - | 333 | 620 | IPR011989 | - | |
Cco05g2381 | 630 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 387 | 429 | IPR000225 | GO:0005515(InterPro) | |
Cco05g2381 | 630 | SMART | Ubox_2 | 252 | 315 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco05g2381 | 630 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 247 | 322 | IPR013083 | - | |
Cco05g2381 | 630 | SUPERFAMILY | ARM repeat | 346 | 620 | IPR016024 | - | |
Cco05g2381 | 630 | Pfam | Armadillo/beta-catenin-like repeat | 417 | 456 | IPR000225 | GO:0005515(InterPro) | |
Cco05g2381 | 630 | Pfam | Armadillo/beta-catenin-like repeat | 459 | 497 | IPR000225 | GO:0005515(InterPro) | |
Cco05g2381 | 630 | Pfam | Armadillo/beta-catenin-like repeat | 376 | 415 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0639 | Cco-Chr1:6553085 | Cco05g2381 | Cco-Chr5:32309586 | 2.70E-50 | dispersed | |
Cco03g0164 | Cco-Chr3:1593850 | Cco05g2381 | Cco-Chr5:32309586 | 5.40E-116 | dispersed | |
Cco04g1480 | Cco-Chr4:30239826 | Cco05g2381 | Cco-Chr5:32309586 | 1.30E-17 | dispersed | |
Cco04g1925 | Cco-Chr4:33650683 | Cco05g2381 | Cco-Chr5:32309586 | 3.20E-13 | dispersed | |
Cco05g2381 | Cco-Chr5:32309586 | Cco07g0680 | Cco-Chr7:11764052 | 1.20E-63 | dispersed | |
Cco05g2381 | Cco-Chr5:32309586 | Cco02g2163 | Cco-Chr2:34366997 | 1.10E-120 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2381 | K27628 | - | csv:101221065 | 1109.36 |