Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2390 ATGGTGGCCGGCAGATCAGGAATCTCTGGGTGCTCCAACATAAGGAGCATAGTCGTCCACGTCATCATCGGAAGGTGGTTCGTGGTGTTCGCTTCGCTCTTAATCATGGCGGCTGCCGGAGCAACGTACATGTTTGGCCTATATTCGAACGACATAAAATCTGTTTTGGGTTATGACCAAACAACGTTGAATTTGCTGAGTTTTTTCAAAGATTTGGGTGCAAACGTCGGCGTTTTGTCTGGACTTATTAACGAGGTTACGCCGCCATGGGTGGTTTTGTCCATCGGCGCTGTTTTGAATTTTTTTGGTTACTTCATGATTTGGCTGGCTGTTACTAAGCGGATCTCTACCCCCAAAGTTTGGCAAATGTGTCTCTATATTTGTATTGGAGCCAATTCTCAATCTTTTGCTAATACCGGTTCTCTTGTTACCTGTGTCCAGAACTTTCCTGAGAGTCGTGGCGTAGTTCTCGGTATCTTGAAGGGATACGTCGGACTGAGCGGCGCCATAATCACACAACTCTTCCATGCATTTTACGGCAACGATACCAAATCCTTAATTCTCCTCATCGGATGGCTCCCGGCGGCGATTTCCTTCGCATTTTTACGAACAATTCGTATTATGAAAGTTATCCGACAGCCAAACGAGCTTAAAGTCTTCTACAATTTCCTTTACATTTCTCTTGGCCTCGCCGGATTCCTAATGCTAATGATCATCGTAGAGAGCAAAACAGAGTTCACTCAAAGCGAATACGGTGGCAGCGCCGCTGTCGTCCTTCTCCTCCTCTTCCTCCCACTCGCCGTCGTCATCATTGAAGAATACAATCTCTGGAAACTCAAAACCGTCCTCATTAAATCCCCAAATCCCTCTGTTCAAATCGTAACAGAGAAACTCCCAAAGACCGAGCAACTCCATAAGACAGAGCATCCAAAACAACAAAAAGAACCATCTTGTTGGACAACAATTTTCAACCCACCAGCGCGCGGCGAGGATTTCACAATTCTCCAAGCTCTCTTCAGTGTCGACATGCTGATTCTATTCCTCTCTGCAATTTGCGGCGTCGGCGGAACATTAACGGCAATAGACAATTTGGGTCAAATCGGAATGTCTTTGGGGTACCCAAAAAGAAGCATTAGCACATTTGTAACATTAGTCAGCATTTGGAATTACCTCGGCCGAGTTGCCTCTGGTTTCATCTCAGAAATAGTTTTGACAAAATACAAATTCCCTCGTCCTCTAATGCTCTCTCTGACCCTTCTTTTTTCCTGCATTGGCCATTTGATGATCGCATTTGATGTCCCAAATGGGCTTTATGTGGCTTCCATCGTAATTGGATTCTGCTTTGGAGCACAGTGGCCATTGATTTTCGCCATAATTTCAGAGCTTTTTGGGTTGAAATATTACTCCACACTATACAATTTTGGGGCAGTGGCAAGCCCAGTTGGGCTTTATGTTCTGAATGTGAAAGTGGCTGGGAATTTCTACGACAGAGAAGCAGAGAAGCAACTGAGAGCAAAAGGGATGATCAGAAAAGCAGGGGAAGAATTAAAGTGCTTTGGAGGGGAATGCTTCAAGCTTTCATTCATTGTAATTACTGCAGTTACTTTGTTGGGTATGTTTGTTTCGTTGATTTTAGTGATTAGAACGAGGAGTTTTTACAAGAGTGATATTTATCAGAAGTTCCGAGATGAAGCTGAAACAGAGGTGGCCGGAAATGGATGTTTGGCGGCCGCCACAGCAACAGAAGAGACAAGAAAATGA 1761 44.52 MVAGRSGISGCSNIRSIVVHVIIGRWFVVFASLLIMAAAGATYMFGLYSNDIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLAVTKRISTPKVWQMCLYICIGANSQSFANTGSLVTCVQNFPESRGVVLGILKGYVGLSGAIITQLFHAFYGNDTKSLILLIGWLPAAISFAFLRTIRIMKVIRQPNELKVFYNFLYISLGLAGFLMLMIIVESKTEFTQSEYGGSAAVVLLLLFLPLAVVIIEEYNLWKLKTVLIKSPNPSVQIVTEKLPKTEQLHKTEHPKQQKEPSCWTTIFNPPARGEDFTILQALFSVDMLILFLSAICGVGGTLTAIDNLGQIGMSLGYPKRSISTFVTLVSIWNYLGRVASGFISEIVLTKYKFPRPLMLSLTLLFSCIGHLMIAFDVPNGLYVASIVIGFCFGAQWPLIFAIISELFGLKYYSTLYNFGAVASPVGLYVLNVKVAGNFYDREAEKQLRAKGMIRKAGEELKCFGGECFKLSFIVITAVTLLGMFVSLILVIRTRSFYKSDIYQKFRDEAETEVAGNGCLAAATATEETRK 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32381704 32383991 + CcPI632755_05g023900.1 Cco05g2390 180018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2390 586 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 25 561 - GO:0016020(PANTHER)
Cco05g2390 586 Pfam Nodulin-like 25 270 IPR010658 -
Cco05g2390 586 Gene3D MFS general substrate transporter like domains 332 554 IPR036259 -
Cco05g2390 586 CDD MFS_Mch1p_like 24 539 - -
Cco05g2390 586 FunFam Nodulin family protein 334 555 - -
Cco05g2390 586 SUPERFAMILY MFS general substrate transporter 25 551 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0273 Cco-Chr3:2901825 Cco05g2390 Cco-Chr5:32381704 1.00E-141 dispersed
Cco03g0274 Cco-Chr3:2909989 Cco05g2390 Cco-Chr5:32381704 3.00E-194 dispersed
Cco04g1147 Cco-Chr4:26833413 Cco05g2390 Cco-Chr5:32381704 2.70E-187 dispersed
Cco05g2390 Cco-Chr5:32381704 Cco10g1986 Cco-Chr10:33376859 2.60E-137 dispersed
Cco05g2390 Cco-Chr5:32381704 Cco05g2391 Cco-Chr5:32391771 4.50E-206 tandem
Cco10g1983 Cco-Chr10:33350382 Cco05g2390 Cco-Chr5:32381704 3.80E-205 wgd
Cco05g2390 Cco-Chr5:32381704 Cco08g0923 Cco-Chr8:21147416 3.30E-217 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2390 - - - 0.0