Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2391 ATGGAGGGATTCGGCATGAAATCCTTTACACTAAAACTAATCAAAGGGTCATGGTTCATGATGTTTGGGTCGTTCCTAATCATGTCGATGGCAGGCATCCCCTACATGTTCGGCTTGTATTCAAGCACCATAAAATCCGTCTTAGGGTACGACCAAACAACCCTAAACTTCATAAGTTTCTTCAAAGATGTCGGTACAACGGTCGGCGTCGTAGCTGGGTTAATCAACGAAGTAACACCGCCATGGTCCATCCTAGCCATGGGAGCTCTCCTCAACTTCTTCGGCTACTTCATGATCTGGTTATCCGTCTCCGAGAAAATCCCGACTCACGTCTGGTTAATGTGCCTCTACATCTGTGTCGGCGCCAACGCAACGACGTTCGCCAACACGGGCGCGTTAGTTACGTGCGTAAAGAACTACCCGCAACGGCGTGGCGTCGTGATCGGGATTTTGAAAGGGTATATGGGATTGAGTGGGGCAATTGTGACGCAATTGTATCATGCTATATATGGGAAAGATGAGAAGTCGTTGATATTGTTGTTGGGGTGGTTGCCTGCGGCGGTGTCGTTCGTGTTTTTGCCGACGGTACGGCGGATGAAGGTGGAGCATGAGGAGGATGAGTTGAAGGTTTTTTATAGGTTTTTGTATATATCGTTGGGATTGGCAGGGTTTTTGATGATGATGATAATTTTGCAACAAAAGTTTAGTTTTGATAGAGGGGAATATGGAGGGAGTGCGGCGGTGGTTACTATTTTGTTGCTTTTTCCTATCGTCGTGGTTGTTGCTCAAGAGTTTAAGGCGTGGCGGCGGTTGAATAAGCCGGCGGTTCTTGAAAATGGCCTTTCCCCCTTGCCGATGTCACCGCCATTGAAGAACACAACACCAATGTCACTCCTCCCAAAGAAACCAAAACCCCAACAACAACCCATCAAAGTCGAGTGGTGGAAAAACGTATTTAGTCCCCCACCAAGAGGAGACGATTGGACAATCCTCCAAGCTCTGTTCAGCTTCGACATGTTCCTCCTCTTCCTTGCCACCGCCTGCGGCGTCGGCGGCACCCTCACCGCCATCGACAACCTCGGCCAAATCGGTCAATCCCAAGATTACCCCAAAAAAAGCATCAGCACATTCGTTTCCCTCGTCAGCATCTGGAATTACCTCGGCCGAGTCATGGCCGGATTCCTCTCCGAACATTTACTCATCAAATACAAATTCCCCCGTCCTTTAATGCTTACGATCGTTCTCCTTCTTTCCTGCATTGCCCATCTTCTAATCGCCTTCAATCCCGCCGGCGGCCTTTACATCGCCTCTGTTTTGACCGGATTCTGTTACGGCGCTCAATGGCCTCTGCTTTTCGCCATTGTTTCAGAGATTTTTGGGCTGAAATATTACGCGACTTTGTATAATTTCGGGTCGGTGGCTAGCCCAGTAGGGCTTTATGTGTTGAATGTGAATGTGGCTGGGTATTTGTATGATAAGGAAGCGAAGAAGCAGCTGGCGGTGGCGGGGAGGATTAGGAAAACAGGGGAGGAGTTGATTTGTAATGGGACGGTGTGTTTTAAGCTTTCTTTTGTGATTATTACGGCGGTGAGTTTGTTTGGGGCTTTGGTTTCCTTGGTTTTAGTGTTGAGGACCAAGAAGTTTTATAAGAGCGATATTTATAGGAAGTTTAGAGAGGCAGAGGAGGCCGCCGCCGCGGTGGAGAAAGAGGAGGAGGATGGTGGTGATGGGGTTAGAAACGGCGGCGGTTTGGTGGAGGAGTCGAAACAGGGGCTTAGGCAATGA 1785 48.8 MEGFGMKSFTLKLIKGSWFMMFGSFLIMSMAGIPYMFGLYSSTIKSVLGYDQTTLNFISFFKDVGTTVGVVAGLINEVTPPWSILAMGALLNFFGYFMIWLSVSEKIPTHVWLMCLYICVGANATTFANTGALVTCVKNYPQRRGVVIGILKGYMGLSGAIVTQLYHAIYGKDEKSLILLLGWLPAAVSFVFLPTVRRMKVEHEEDELKVFYRFLYISLGLAGFLMMMIILQQKFSFDRGEYGGSAAVVTILLLFPIVVVVAQEFKAWRRLNKPAVLENGLSPLPMSPPLKNTTPMSLLPKKPKPQQQPIKVEWWKNVFSPPPRGDDWTILQALFSFDMFLLFLATACGVGGTLTAIDNLGQIGQSQDYPKKSISTFVSLVSIWNYLGRVMAGFLSEHLLIKYKFPRPLMLTIVLLLSCIAHLLIAFNPAGGLYIASVLTGFCYGAQWPLLFAIVSEIFGLKYYATLYNFGSVASPVGLYVLNVNVAGYLYDKEAKKQLAVAGRIRKTGEELICNGTVCFKLSFVIITAVSLFGALVSLVLVLRTKKFYKSDIYRKFREAEEAAAAVEKEEEDGGDGVRNGGGLVEESKQGLRQ 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32391771 32393719 + CcPI632755_05g023910.1 Cco05g2391 180019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2391 594 CDD MFS_Mch1p_like 18 535 - -
Cco05g2391 594 Pfam Nodulin-like 18 261 IPR010658 -
Cco05g2391 594 SUPERFAMILY MFS general substrate transporter 247 548 IPR036259 -
Cco05g2391 594 Gene3D MFS general substrate transporter like domains 328 550 IPR036259 -
Cco05g2391 594 Coils Coil 550 570 - -
Cco05g2391 594 Pfam Major Facilitator Superfamily 341 547 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cco05g2391 594 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 17 558 - GO:0016020(PANTHER)
Cco05g2391 594 SUPERFAMILY MFS general substrate transporter 12 203 IPR036259 -
Cco05g2391 594 MobiDBLite consensus disorder prediction 566 594 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0411 Cco-Chr4:13370629 Cco05g2391 Cco-Chr5:32391771 9.70E-158 dispersed
Cco05g2391 Cco-Chr5:32391771 Cco08g0923 Cco-Chr8:21147416 2.60E-217 dispersed
Cco05g2390 Cco-Chr5:32381704 Cco05g2391 Cco-Chr5:32391771 4.50E-206 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2391 - - - 0.0