Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2392 ATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGCTTCAATCTTTGGTGTTGCTTCTGGTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCAGATTCTGTTGCTGATGAACTTCAAAGGACAGTGAATGCATCTGTATGGAGAAGACAAATGCTGTCCGTCGAATCAAAGGATCAAACTTTCTCTTGTCTCACCGGAAACCCCATCGATGATTGCTGGCGGTGCGACCCGAATTGGGCGGCAAACCGACAGCGACTGGCCGACTGCGGTATCGGGTTCGGCCGGGATGCCATGGGAGGCAAAGGCGGAAAGATCTACATCGTTACCGACTCGTCGGATTTGGATCCGGCGAACCCTACTCCGGGGACTCTCCGGCACGCTGTGATCCAATTCGAACCGCTGTGGATCATCTTCTCCGCCGACATGACTATCAAGCTGAAATACGAGCTTATCATTAACAGTTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATTCAATACGTGTCCAATGTCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGATCGACCCCAACTCACGTGGGCCATCGAGGGCTATCAGACGGAGATGGGATCTCAATTTTTAGCTCAAGAAAGATATGGATCGATCATTGCTCATTGTCATACTGCACAGATGGGCTAATAGACGCAATAATGGGATCAACAGGAATTACAATATCAAATAGCTACTTCTCGCACCATGATGAAGTGATGTTGTTAGGGCACGACGATCGGTATGTGCAAGACTCGGGGATGCAAGTCACCATTGCCTTCAACCACTTTGGCGAGGCATTAGTCCAACGCATGCCCCGTTGTAGACATGGCTACATTCACGTCGTCAACAATGACTTCACTGCTTGGGAAATGTATGCCATTGGAGGTAGTGCCCAACCCACTATTAACAGCCAAGGCAATCGCTACACCGCTCCTGTGGACCCCAATGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGACATTTTGGTGAACGGCGCGTTTTTTGTACCTTCCGGTGCTGGACTTAGCACCCAGTACGGTAAGGCTTCCAGCGTGGAGCCTAAGTCTGTGGCTCTCATCAATCAACTCACTATGAACGCCGGTGTTTTGGGCGCCCCCAGGTATAATGCTGGTCAAGGAATTGTATATCCGGGATTCAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGTAATGGTAATGATGATTACTACGGCATGATATTTAAAGCTGGTGGTTATAGAGTATTGCCAATATTGCCCTCCATAAACTTATGTACTCAAATTCTAATACTTTTGTACATAGTCGCAAATTATAGTGGCCTATTCACATTATAG 1512 48.81 MFPVLSILLIWMSASIFGVASGSFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSVESKDQTFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPANPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSAQPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNAGQGIVYPGFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAGGYRVLPILPSINLCTQILILLYIVANYSGLFTL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32401227 32408558 - CcPI632755_05g023920.1 Cco05g2392 180020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2392 503 SUPERFAMILY Pectin lyase-like 61 390 IPR011050 -
Cco05g2392 503 Gene3D - 70 412 IPR012334 -
Cco05g2392 503 SMART amb_all 145 342 IPR002022 -
Cco05g2392 503 FunFam Pectate lyase 70 412 - -
Cco05g2392 503 Pfam Pectate lyase 153 334 IPR002022 -
Cco05g2392 503 PANTHER PECTATE LYASE 18-RELATED 20 413 IPR045032 GO:0030570(InterPro)
Cco05g2392 503 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Cco05g2392 503 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Cco05g2392 503 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Cco05g2392 503 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Cco05g2392 503 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Cco05g2392 503 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Cco05g2392 503 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Cco05g2392 503 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1144 Cco-Chr4:26818121 Cco05g2392 Cco-Chr5:32401227 3.10E-181 dispersed
Cco05g0410 Cco-Chr5:3388023 Cco05g2392 Cco-Chr5:32401227 3.70E-153 dispersed
Cco05g2392 Cco-Chr5:32401227 Cco06g0822 Cco-Chr6:9849896 5.30E-155 dispersed
Cco04g1051 Cco-Chr4:26054534 Cco05g2392 Cco-Chr5:32401227 1.20E-42 transposed
Cco05g2392 Cco-Chr5:32401227 Cco08g0925 Cco-Chr8:21168709 1.10E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2392 K01728 - csv:101205739 936.021