Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2392 | ATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGCTTCAATCTTTGGTGTTGCTTCTGGTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCAGATTCTGTTGCTGATGAACTTCAAAGGACAGTGAATGCATCTGTATGGAGAAGACAAATGCTGTCCGTCGAATCAAAGGATCAAACTTTCTCTTGTCTCACCGGAAACCCCATCGATGATTGCTGGCGGTGCGACCCGAATTGGGCGGCAAACCGACAGCGACTGGCCGACTGCGGTATCGGGTTCGGCCGGGATGCCATGGGAGGCAAAGGCGGAAAGATCTACATCGTTACCGACTCGTCGGATTTGGATCCGGCGAACCCTACTCCGGGGACTCTCCGGCACGCTGTGATCCAATTCGAACCGCTGTGGATCATCTTCTCCGCCGACATGACTATCAAGCTGAAATACGAGCTTATCATTAACAGTTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATTCAATACGTGTCCAATGTCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGATCGACCCCAACTCACGTGGGCCATCGAGGGCTATCAGACGGAGATGGGATCTCAATTTTTAGCTCAAGAAAGATATGGATCGATCATTGCTCATTGTCATACTGCACAGATGGGCTAATAGACGCAATAATGGGATCAACAGGAATTACAATATCAAATAGCTACTTCTCGCACCATGATGAAGTGATGTTGTTAGGGCACGACGATCGGTATGTGCAAGACTCGGGGATGCAAGTCACCATTGCCTTCAACCACTTTGGCGAGGCATTAGTCCAACGCATGCCCCGTTGTAGACATGGCTACATTCACGTCGTCAACAATGACTTCACTGCTTGGGAAATGTATGCCATTGGAGGTAGTGCCCAACCCACTATTAACAGCCAAGGCAATCGCTACACCGCTCCTGTGGACCCCAATGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGACATTTTGGTGAACGGCGCGTTTTTTGTACCTTCCGGTGCTGGACTTAGCACCCAGTACGGTAAGGCTTCCAGCGTGGAGCCTAAGTCTGTGGCTCTCATCAATCAACTCACTATGAACGCCGGTGTTTTGGGCGCCCCCAGGTATAATGCTGGTCAAGGAATTGTATATCCGGGATTCAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGTAATGGTAATGATGATTACTACGGCATGATATTTAAAGCTGGTGGTTATAGAGTATTGCCAATATTGCCCTCCATAAACTTATGTACTCAAATTCTAATACTTTTGTACATAGTCGCAAATTATAGTGGCCTATTCACATTATAG | 1512 | 48.81 | MFPVLSILLIWMSASIFGVASGSFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSVESKDQTFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPANPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSAQPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNAGQGIVYPGFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAGGYRVLPILPSINLCTQILILLYIVANYSGLFTL | 503 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32401227 | 32408558 | - | CcPI632755_05g023920.1 | Cco05g2392 | 180020 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2392 | 503 | SUPERFAMILY | Pectin lyase-like | 61 | 390 | IPR011050 | - | |
Cco05g2392 | 503 | Gene3D | - | 70 | 412 | IPR012334 | - | |
Cco05g2392 | 503 | SMART | amb_all | 145 | 342 | IPR002022 | - | |
Cco05g2392 | 503 | FunFam | Pectate lyase | 70 | 412 | - | - | |
Cco05g2392 | 503 | Pfam | Pectate lyase | 153 | 334 | IPR002022 | - | |
Cco05g2392 | 503 | PANTHER | PECTATE LYASE 18-RELATED | 20 | 413 | IPR045032 | GO:0030570(InterPro) | |
Cco05g2392 | 503 | PRINTS | Pollen allergen Amb family signature | 217 | 238 | IPR018082 | - | |
Cco05g2392 | 503 | PRINTS | Pollen allergen Amb family signature | 93 | 110 | IPR018082 | - | |
Cco05g2392 | 503 | PRINTS | Pollen allergen Amb family signature | 153 | 169 | IPR018082 | - | |
Cco05g2392 | 503 | PRINTS | Pollen allergen Amb family signature | 390 | 413 | IPR018082 | - | |
Cco05g2392 | 503 | PRINTS | Pollen allergen Amb family signature | 297 | 316 | IPR018082 | - | |
Cco05g2392 | 503 | PRINTS | Pollen allergen Amb family signature | 361 | 385 | IPR018082 | - | |
Cco05g2392 | 503 | PRINTS | Pollen allergen Amb family signature | 117 | 142 | IPR018082 | - | |
Cco05g2392 | 503 | PRINTS | Pollen allergen Amb family signature | 319 | 338 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1144 | Cco-Chr4:26818121 | Cco05g2392 | Cco-Chr5:32401227 | 3.10E-181 | dispersed | |
Cco05g0410 | Cco-Chr5:3388023 | Cco05g2392 | Cco-Chr5:32401227 | 3.70E-153 | dispersed | |
Cco05g2392 | Cco-Chr5:32401227 | Cco06g0822 | Cco-Chr6:9849896 | 5.30E-155 | dispersed | |
Cco04g1051 | Cco-Chr4:26054534 | Cco05g2392 | Cco-Chr5:32401227 | 1.20E-42 | transposed | |
Cco05g2392 | Cco-Chr5:32401227 | Cco08g0925 | Cco-Chr8:21168709 | 1.10E-192 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2392 | K01728 | - | csv:101205739 | 936.021 |