Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2408 ATGGGCTTTTTCGCTCTCTCTTATTATCCCAAAAGGCCCAATGGGCTTCTCGAATTATGCTGGAGCTCCGCCAATTTGCTTCATCGTGCTCCGGCGAACGATCGCAATTCGGCCATGAACTGTCTTCAAAAACTTTCAATATCATCTTCTTTCCCGTTCCGGAGCTTCAAATGCCGACAGAGACAGCCTGAATTCCAGCTCTGTAACCTGATTGTTTCGATTGATACAGGTGATAAGGAACTTTACCGATCTACATCGACGTTCTATCGTGAAGTGTCTGGCTCTACATCAAGTGCTGAAATGAGTGGCGCAGAGGTGGATGATGCCGAGGAAAAGGAGGAAAAATCTGAAATGTACAGCCATAACATGACAGAAGCTATGGGTGCTGTATTAACATATAGACATGAGCTGGGAATGAACTACAACTTTATTCGTCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTAAAAACAGTTTTCTGCTTGCAGCAAGATCCAGATTTGGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACATTTGATGATATTGAACATTTACGAGCTCAAATAAGGGATTTTGATGCATTTGACCTACGGTTAAGATTACCAGCTGTTGTAAGCAAATTGCATAAAGCCATAAACCGAAACGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGGGCTCCTGCTGTTGCGATGGCGTATATGTTCTGGGTTCAAGGCTACAAACTCAATGAGGCTCTAGAATTACTTCTGAGCAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAATGCAACAGCCGATATTCTTATAGGATTTAGAAAGAAGCCTGTCACTTTATCATGGGAAGATGACCAATGCTCAACTGTGGAAGTATCTGGACTTGATATTGGATGGGGCCAGAGGATTCCATTAAAATTCGACGAGGCACGAGGTGCATGGATTCTCAATAGGGAACTGCCGGAAGGACGATATGAATACAAATACATTATCGATGGTATATGGACGTGCAACGAAAACGAGCCCGTCACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTGAAGTTGTTGAAGATGAGGATCCGGAGAATTTCTTGAAGCTTGCCCAGATGAAAATTGAATTAAGAGTCGATGAATTATGGAGTTAA 1221 42.67 MGFFALSYYPKRPNGLLELCWSSANLLHRAPANDRNSAMNCLQKLSISSSFPFRSFKCRQRQPEFQLCNLIVSIDTGDKELYRSTSTFYREVSGSTSSAEMSGAEVDDAEEKEEKSEMYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVKTVFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVAMAYMFWVQGYKLNEALELLLSKRSCFPKIDAIKNATADILIGFRKKPVTLSWEDDQCSTVEVSGLDIGWGQRIPLKFDEARGAWILNRELPEGRYEYKYIIDGIWTCNENEPVTPPNKDGHVNNFIEVVEDEDPENFLKLAQMKIELRVDELWS 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32563885 32573610 - CcPI632755_05g024080.1 Cco05g2408 180036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2408 406 Gene3D Protein tyrosine phosphatase superfamily 133 387 IPR029021 -
Cco05g2408 406 Pfam Glycogen recognition site of AMP-activated protein kinase 299 383 IPR032640 -
Cco05g2408 406 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 295 385 - -
Cco05g2408 406 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 137 281 IPR029021 -
Cco05g2408 406 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 41 387 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Cco05g2408 406 CDD E_set_AMPKbeta_like_N 299 380 - -
Cco05g2408 406 CDD DSP_laforin-like 139 286 IPR045204 GO:0019203(InterPro)
Cco05g2408 406 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 217 275 IPR000387 GO:0016311(InterPro)
Cco05g2408 406 Pfam Dual specificity phosphatase, catalytic domain 196 278 IPR000340 GO:0016311(InterPro)
Cco05g2408 406 Gene3D Immunoglobulins 295 385 IPR013783 -
Cco05g2408 406 SUPERFAMILY E set domains 298 380 IPR014756 -
Cco05g2408 406 ProSiteProfiles Dual specificity protein phosphatase domain profile. 140 297 IPR020422 GO:0006470(InterPro)
Cco05g2408 406 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 133 314 - -
Cco05g2408 406 SMART dsp_5 140 286 IPR020422 GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2408 Cco-Chr5:32563885 Cco07g0514 Cco-Chr7:6352478 9.50E-38 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2408 - - - 0.0