Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2410 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAAAGCAACGCTTCTAATGGCGGCAATGTTCAAAGATCCAAGAGCTTTGCCTTTCGAGCTCCTCAGGAGAATTTTACAATCCAGGATTTTGAATTGGGAAAGATTTATGGGGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCTTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGATGAAGCTCGGTTTTATACTGCAGAAGTGGTCGATGCCCTCGAATACATACACAACATGGGATTGATACACCGAGATATCAAGCCTGAAAACTTGCTACTTACTTCTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTTGATAGTCGAATTACTGTTCTCCCGAATGCAGCATCAGATGATAAAGCATGTACATTTGTGGGAACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCTGCAACTTTCGGAAATGACCTTTGGGCGCTCGGGTGCACCTTGTACCAGATGCTTTCAGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTCCAAAAAATTGTAGCACGAGATATAAAATTCCCCAGCTATTTTTCTGAGCAAGCAAGGGACCTTATCGACCACCTATTGGACTTAGATCCCATCAAGAGACCGGGTGCCGGAGCAGAGGGTTATACTTCTCTCAAGAATCATCCCTTCTTTGAGGGGGTTGATTGGAACAACATAAGAGCACAAACTCCTCCCAGGCTTGCTTTAGAAGCAGGGAGTCATTTGAATGAGAACGATGATGGCTCTGAGTCCTCTTGGAATCCTTCACATGTTGGAGACGGTGCATCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCCGAAGGCTCACATCATATTACTCGACTTGCATCGATTGACTCCTTTGATTCAAAATGGCAACAATTCCTTGAGCCTGGAGAATCTGTTCTTATGATCTCAATGGTGAAAAAACTTCAGAAGCTAACAAGCAAAAAAGTTCAACTCATCCTTACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAATATTATTTGGTCTGACAATCCTAGTGACCTCAACATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACAATTTGTGCTATCATTCTGTTGCCAAAGCCATTGGCTCAGTTGTTCTGTTTCTCAACTATTCTAATTCAAAGTTCATTCTTCAGCCAAAGAAGATTGCCTCTTTTGAGGATGCAAAACAGCGAGCATGGCAGTGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGACTCGTTCGTGTTTGGTGACACATTCTTTGGAAGAGTCTACATTTTAAAGAGGAAAAAAGAAACTAATTCAGGAGCTGAGCTGATTAGAGGCCATTTATCTGCTAGAATGCTTAAAATGGATGAATTTTTGAAGAACCAAATCTTTGCAACCCATGCAGTTGCTGCTACAGGCTCAGTGACACTAAGCACAGTTCTTACTTACCCTCTTGACACTATCAAAACTCTAATCCAGGTTGGTTCTGATCCTTTAGGATCTGGTAAACAGTTGACGATTACTCAGGCTTTACAGAGAATTCGATCTTTCTCAGGAAATTCAGGTTTGTATAGTGGATTTGGATGGTTGGCCTTTGGGAGACTATTCGGGATAGGAGCTCGATTTGGAATATATGAAATTGTGACAGCATTTTATAAAGATGGTCGTGAAGATGATTACGTGCATGTGTCTGAGGCTCTTCTAGCTGGACTTATGGCTGGTGCTGCCGAATCATTGATATGCTCTCCATTTGAGCTTGTTAAACTTCGTGCCCAGGTGACCTCCGCAGTTCGTTTACCAAGCCCAAGTTCTCTCATCGGACAAGAAAGAGCTCTTGCACCTTCTATGTCAAGATTTCTTCATCGCTATACACTGGATCAGAAAGCCTTAAACCATTCAGTTGGTCTTTTATCCACCCTAACAACTAAGCACCCAAATATAAAAGGTGCTTTACTAGAGTATCCATGGATGATGACGGGGTCTGGGAGGCCACCTGCAGTCAGCAATGTGCATAGGCCATCAGATATCATTTCACTAGAAGGATGGCAAGCATTTTGGAGAGGTCTACGATCAGGGATTGCGAGGGATTCCATCTTTAGTGGCGTATTTTTCTCAACCTGGCAATTTCTGCACCAGTCTATGCTTATTTGGAAGAGCATCGAGATGGATCCACCACCCAGGTCAAATGATGAAGTAGGCCCACTGTCTCCATTTTCAGTTAGTCTTGCAGCTGGATTTTCAGGTGCAGTTGCTGCGGCTGCTTCTCATGGTTTCGATACTGCCAAGAGTCGATCACTATGCACCGTGCTGCCCAAGTATGTGGTCATGGAGAGAAAGTATCTCAAATGGCGGAGACCGGGTAATAGATTCGAGAGAACTACAGGTATTCATCCTGCAGATCGAAGTCTCCTGTTTCGTGGCGTAGGATTGCGAATGGCTCGCTGTGGTTTAGGGTCATTTTTTATGGTTGGAGTGCAATGTTAA 2790 42.87 MLAMEKDFDAKLMIQSNASNGGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYTAEVVDALEYIHNMGLIHRDIKPENLLLTSDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYTSLKNHPFFEGVDWNNIRAQTPPRLALEAGSHLNENDDGSESSWNPSHVGDGASRQNDGNAGSASTSEGSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPSDLNIQVTSPSHFKICTICAIILLPKPLAQLFCFSTILIQSSFFSQRRLPLLRMQNSEHGSGRRRSRGFRIGDSFVFGDTFFGRVYILKRKKETNSGAELIRGHLSARMLKMDEFLKNQIFATHAVAATGSVTLSTVLTYPLDTIKTLIQVGSDPLGSGKQLTITQALQRIRSFSGNSGLYSGFGWLAFGRLFGIGARFGIYEIVTAFYKDGREDDYVHVSEALLAGLMAGAAESLICSPFELVKLRAQVTSAVRLPSPSSLIGQERALAPSMSRFLHRYTLDQKALNHSVGLLSTLTTKHPNIKGALLEYPWMMTGSGRPPAVSNVHRPSDIISLEGWQAFWRGLRSGIARDSIFSGVFFSTWQFLHQSMLIWKSIEMDPPPRSNDEVGPLSPFSVSLAAGFSGAVAAAASHGFDTAKSRSLCTVLPKYVVMERKYLKWRRPGNRFERTTGIHPADRSLLFRGVGLRMARCGLGSFFMVGVQC 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32603419 32615954 + CcPI632755_05g024100.1 Cco05g2410 180038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2410 929 Pfam Protein kinase domain 45 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2410 929 MobiDBLite consensus disorder prediction 332 372 - -
Cco05g2410 929 FunFam 3-phosphoinositide-dependent protein kinase 1 359 471 - -
Cco05g2410 929 ProSiteProfiles Solute carrier (Solcar) repeat profile. 564 653 IPR018108 -
Cco05g2410 929 SUPERFAMILY PH domain-like 305 462 - -
Cco05g2410 929 SUPERFAMILY Protein kinase-like (PK-like) 41 359 IPR011009 -
Cco05g2410 929 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2410 929 SUPERFAMILY Mitochondrial carrier 567 925 IPR023395 -
Cco05g2410 929 Gene3D Mitochondrial carrier domain 742 928 IPR023395 -
Cco05g2410 929 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Cco05g2410 929 SMART serkin_6 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2410 929 Gene3D - 357 471 IPR011993 -
Cco05g2410 929 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
Cco05g2410 929 MobiDBLite consensus disorder prediction 338 372 - -
Cco05g2410 929 Gene3D Mitochondrial carrier domain 543 725 IPR023395 -
Cco05g2410 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2410 929 Pfam PH domain 386 462 IPR033931 -
Cco05g2410 929 FunFam 3-phosphoinositide-dependent protein kinase 2-like 42 127 - -
Cco05g2410 929 CDD STKc_PDK1 42 311 IPR039046 GO:0004674(InterPro)
Cco05g2410 929 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 325 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cco05g2410 929 Pfam Mitochondrial carrier protein 665 699 IPR018108 -
Cco05g2410 929 Pfam Mitochondrial carrier protein 566 655 IPR018108 -
Cco05g2410 929 FunFam 3-phosphoinositide-dependent protein kinase 2-like 128 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2410 Cco-Chr5:32603419 Cco06g1864 Cco-Chr6:28871758 2.00E-54 dispersed
Cco06g1724 Cco-Chr6:27751066 Cco05g2410 Cco-Chr5:32603419 2.30E-07 dispersed
Cco05g2410 Cco-Chr5:32603419 Cco02g1154 Cco-Chr2:19883135 4.70E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86872 PF00069 Pkinase 5.50E-65 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2410 K06276 - csv:101212874 887.1