Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g2424 | ATGGCTTCTTTCTCCTCTTCATCCACTTTCTTCCTCATTGCCTTTTTCCTCTCCGGTTTAATCTTCTTCCTCACCAGAAAACTCATAAAAAACCGCCCCAAACTCCCTCCTGGACCGCCCGGTTGGCCCATCGTCGGCAACCTCTTCCAAGTCGCCCGGTCCAGAAAACCCTTCTTCGAATACATCGAAGATCAACGCCGAATTTACGGCCCAATTTTTACCCTCAAAATGGGCACTACAACAATGGTTGTATTAAGCGATTCGAATCTCGTTCACGAAGCTCTAATTAAAACGGGGGCAGTTTTTGCTGACCGGCCCAGAGAAAATCCTACCCGGATTATATTCAGTAGCAATAAATTTTCAGTCAATTCGGCGGTTTACGGCCCTATATGGCGGACCCTCCGCCGCAACATGGTGGAAAATATGCTCAGCTCCGGCAAGGTAAAGGAGTTTCATGGCGTGAGAGAAAAAGCAATGGAAAAATTCGTGAAGCGGTTACGAGATGAAGCAAAGGCTAATAACGGCGTCGTTTTGGTACTTAAAAACGCGCGTTTTGCGGTGTTTTGGATTCTGTTGACAATGTGTTTCGGATTCGAGATGGAAGAAGAAACGGTTGAGAAAATGGACGAGATTCTCAAATCCGTTTTGATCACACTCGAACCAAGAATCGACGATTATTTCCCGATTTTAACTCCTTTCTTCTCTAGAGAAAAAAATCGAGCGAATCTCGTTCGGAAAAAACAAGTCGAATTCGTCATTGAGTTAATTAATCGGCGGCGGCGGGCGCTGGAGAATCCGGCGTCCGACGGCACTGCGACGTCATTTTCGTACCTAGACACGCTTTTCGATTTGAAAATCGACGGCCGCGGTGGCGGAGGGAAATCGTCGGCGACGGACGAGGAATTGGTGACACTTTGTTCGGAGTTTTTGAACGGCGGGACGGACACGACGGCGACGGTGATAGAGTGGGGGATGGCGGAATTGATAGGGAATCCGGAAGTTCAGAGGAAAGTTGTGGAAGAAATTAAAGAGACGGTTGGTGAGAGAAAAGTAGAGGAAAAAGACATAGAGAAAATGGTATATTTAAAAGCGGTTGTGAAAGAAGTGCTGCGGAAACATCCTCCGACGTTCTTTGTTTTGACGCACTCCGTGACGGAGCCGGCGAAATTGGCAGGATACGACATCCCGAAAGACACGAACGTGGAATTCTTCCTACCCGCCATTGGAAGGGATCCGAAGCTGTGGAAGAATCCAGAGAAATTCGAACCGGAAAGATTTTACTCCGGCAAGGAAGAAGCCGACATTACCGGCGTCACTGGCGTCAGAATGATGCCGTTCGGCGTAGGGCGGCGGATCTGCCCGGGCTTGGGATTGGCCACCGTCCACATTCATTTAATGCTTGCCAGAATGCTGCAGGAATTTGAATGGACCGCCTATCCGCCGTCCAGCTCCGTCGACTTTTCATGGAAGATGGAGTTCACCGTCGTCATGAAGAATCCTCTTAGAGCTATTGTCAAATCAAGGGTTTAA | 1530 | 48.5 | MASFSSSSTFFLIAFFLSGLIFFLTRKLIKNRPKLPPGPPGWPIVGNLFQVARSRKPFFEYIEDQRRIYGPIFTLKMGTTTMVVLSDSNLVHEALIKTGAVFADRPRENPTRIIFSSNKFSVNSAVYGPIWRTLRRNMVENMLSSGKVKEFHGVREKAMEKFVKRLRDEAKANNGVVLVLKNARFAVFWILLTMCFGFEMEEETVEKMDEILKSVLITLEPRIDDYFPILTPFFSREKNRANLVRKKQVEFVIELINRRRRALENPASDGTATSFSYLDTLFDLKIDGRGGGGKSSATDEELVTLCSEFLNGGTDTTATVIEWGMAELIGNPEVQRKVVEEIKETVGERKVEEKDIEKMVYLKAVVKEVLRKHPPTFFVLTHSVTEPAKLAGYDIPKDTNVEFFLPAIGRDPKLWKNPEKFEPERFYSGKEEADITGVTGVRMMPFGVGRRICPGLGLATVHIHLMLARMLQEFEWTAYPPSSSVDFSWKMEFTVVMKNPLRAIVKSRV | 509 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 32762332 | 32764713 | + | CcPI632755_05g024240.1 | Cco05g2424 | 180052 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g2424 | 509 | PRINTS | E-class P450 group I signature | 66 | 85 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | PRINTS | E-class P450 group I signature | 90 | 111 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | PRINTS | E-class P450 group I signature | 321 | 347 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | PRINTS | E-class P450 group I signature | 301 | 318 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | PRINTS | E-class P450 group I signature | 453 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | PRINTS | E-class P450 group I signature | 443 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | PRINTS | E-class P450 group I signature | 363 | 381 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | PRINTS | E-class P450 group I signature | 404 | 428 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | CDD | CYP77_89 | 68 | 502 | - | - | |
| Cco05g2424 | 509 | Pfam | Cytochrome P450 | 36 | 497 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | PRINTS | P450 superfamily signature | 364 | 375 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | PRINTS | P450 superfamily signature | 453 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | PRINTS | P450 superfamily signature | 444 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | PRINTS | P450 superfamily signature | 312 | 329 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | Gene3D | Cytochrome P450 | 28 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2424 | 509 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 446 | 455 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco05g2424 | 509 | FunFam | Cytochrome P450 family protein | 29 | 509 | - | - | |
| Cco05g2424 | 509 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 18 | 506 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) | |
| Cco05g2424 | 509 | SUPERFAMILY | Cytochrome P450 | 36 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g1993 | Cco-Chr4:34103347 | Cco05g2424 | Cco-Chr5:32762332 | 3.90E-121 | dispersed | |
| Cco05g2424 | Cco-Chr5:32762332 | Cco09g1900 | Cco-Chr9:32449273 | 1.20E-98 | dispersed | |
| Cco02g0826 | Cco-Chr2:9500137 | Cco05g2424 | Cco-Chr5:32762332 | 8.30E-71 | transposed | |
| Cco05g2424 | Cco-Chr5:32762332 | Cco08g0953 | Cco-Chr8:21412664 | 1.10E-205 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g2424 | K21995 | - | csv:101217068 | 870.152 |