Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2431 | ATGGAACAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGTGTAGTTTACAAGGCACGCGATCGTGTCACAAATGAGACTATTGCGTTGAAGAAGATCCGTTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCCATTCGTGAAATTTCACTGTTGAAGGAAATGCAGCATGGCAACATTGTAAGGTTACAAGATGTAGTGCATAGCGAGAAGCGGCTGTATCTTGTTTTTGAGTATCTGGATTTGGATTTGAAGAAGCATATGGACTCCTCTCCTGAATTTGCAAAGGATCCACGCCAAGTAAAAATGTTTCTTTATCAAATTCTTCGTGGCATTGCATACTGTCATTCTCATAGAGTTCTTCACCGAGATCTAAAACCCCAAAATCTACTGATTGATCGTCGTACCAATGCCCTGAAGCTTGCTGATTTTGGACTGGCAAGAGCGTTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACCCTTTGGTACAGAGCACCAGAAATATTACTTGGTTCCCGACATTATTCCACCCCCGTGGATGTGTGGTCAGTGGGTTGTATATTTGCTGAGATGGTTAATCAGCGGCCATTGTTCCCTGGAGACTCTGAGATTGATGAACTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATACGTGGCCTGGTGTTACATCTTTGCCTGATTTTAAATCTGCTTTCCCCAAGTGGCCTCCCAAGGACCTGGCTTCTGTAGTTCCTAATCTTGAAGCCGCTGGCATTGATCTTCTCTCTAAAATGCTTTGCTTGGATCCCACCAGAAGAGTCACTGCCAGGAGTGCCCTCGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTGA | 885 | 44.07 | MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPPKDLASVVPNLEAAGIDLLSKMLCLDPTRRVTARSALEHEYFKDVGFVP | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32817538 | 32822182 | + | CcPI632755_05g024310.1 | Cco05g2431 | 180059 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2431 | 294 | Gene3D | Transferase(Phosphotransferase) domain 1 | 86 | 292 | - | - | |
Cco05g2431 | 294 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 84 | - | - | |
Cco05g2431 | 294 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 123 | 135 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g2431 | 294 | FunFam | Cell division control protein 2 homolog | 86 | 292 | - | - | |
Cco05g2431 | 294 | ProSiteProfiles | Protein kinase domain profile. | 4 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g2431 | 294 | ProSitePatterns | Protein kinases ATP-binding region signature. | 10 | 33 | IPR017441 | GO:0005524(InterPro) | |
Cco05g2431 | 294 | PANTHER | CELL DIVISION PROTEIN KINASE | 3 | 287 | IPR050108 | GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)|GO:0051445(PANTHER) | |
Cco05g2431 | 294 | SMART | serkin_6 | 4 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g2431 | 294 | FunFam | Cell division control protein 2 | 1 | 84 | - | - | |
Cco05g2431 | 294 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 290 | IPR011009 | - | |
Cco05g2431 | 294 | CDD | STKc_CDK1_CdkB_like | 4 | 287 | - | - | |
Cco05g2431 | 294 | Pfam | Protein kinase domain | 4 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2431 | Cco-Chr5:32817538 | Cco11g1957 | Cco-Chr11:32088666 | 8.00E-95 | dispersed | |
Cco05g2431 | Cco-Chr5:32817538 | Cco11g1440 | Cco-Chr11:27176003 | 6.80E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86873 | PF00069 | Pkinase | 2.30E-80 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2431 | K02206 | - | csv:101217311 | 589.341 |