Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2449 ATGTCTTCTCTAATTTCAAGGCTTTTATTTCTCAATTTCTGCTTCTCTATACTCTTTTTCAGCTCAAATTCACAAGATAATGACTCTCAAAAGACATATATTGTGTATATGGGAAGTCATCCAAAAGGGAAGGTTTCAGCTTCATCTCACCATATAAGATTGCTAAAAGAAACCATTGGCAGTACTTTTCCTCCACATTCTTTGCTCCATAGCTACAAGAGAAGCTTCAATGGATTTGTGGCGAAGCTGACTGAAGCTGAAGCAAGAAAGGTTTCAGAAATGGAAGGGATAATATCAGTTTTCCCAAATGGGAAAAAACAACTCCACACAACAAGATCTTGGGACTTCATGGGTTTCTCCGAACAAGTGAAGAGGGTTCCGGCGGTGGAAAGCAACGTCATTGTCGGAGTATTCGACAGCGGAATTTGGCCGGAATCTCCTAGTTTTGACCACACAGGATACGGTCCGCCGCCACCCAAGTGGAAGGGCAGTTGTGAAGTCTCCGCCAATTTCTCTTGCAACAATAAAATCATCGGAGCTCGATCATATCGTAGTGACGGTAAATATCCAGAAGGTGACATCAAAGGTCCAAGAGATTCAGATGGCCACGGAACACACACAGCATCAATTGTAGCTGGAGGGTTGGTTCGTCAAGCGAGCATGTTGGGACTCGCCCTTGGCACAGCAAGGGGCGGAGTCCCATCAGCACGCATTGCCGTATACAAAGTATGTTGGTCTGACGGCTGCACCGACGCTGACATTCTCGCCGCATTTGATGATGCCATTGCTGACGGTGTCGATATCATCTCCGGCTCTCTTGGGGGATCGAGGGTCAAAGATTACTTCAACGACTCCATAGCCATTGGATCTTTCCATGCAATGAAGAAGGGAATTCTTTCGTCATTGGCCGTTGGAAATAACGGCCCTGATTTTACGACCATTGTGAACTTCTCGCCGTGGTCGTTGTCGGTGGCGGCTACCACCACTGATCGAAAATTCGAAACTAAAGTTAAACTAGGAGATGGAAAAGAATTCAATGGAGTCAGCATCAATACATTTGATATAAATGGAAAACAAATTCCATTGGCTTACGCCGGAGATATTCCTAAAGCTCCCTTTGACAGCTCCGTGTCAAGGATGTGCTTTGAGAATACAGTAGACTTGGAGTTGGTAAAGGGTAAAATTGTAGTATGCGATTCATTAACCGTTCCAGAAGGAGTTGTGGCCGTAAAAGGTGCGGTGGGTATTATAATGCAAGACGATTCTTCACAAGATGATACCAACTCTTTTTCATTGCCTGCTTCTCATCTCGGCCCAAAGCCTGGTGCTCTCATTCTCTCTTATATCAACTCAACCAACAGCCTTCCAACAGCAACTATAATGAAGAGCACAGAAAGGAAACGTAAAAGAGCTCCTTTTGTTGCATCTTTTTCTTCAAGAGGTCCAAACCCAATAACCCCCAACATTCTCAAGCCGGATTTATGTGGTCCAGGAGTTGAAATTCTTGCAGCTTGGCCTCCATTGGCTTCACCTTCGGGAGCTGAAGAAGATAGTAGAAGAGTTGTTTATAACATCCTTTCCGGAACTTCAATGGCTTGCCCACATGTCACTGCAGCAGCTGCCTATGTTAAGTCGTTTCATCCTACTTGGTCTCCTGCTGCGCTTAAATCTGCCCTTATCACTACAGCATTTCCAATGAGCCTTAAACGTAATCCAGACAGAGAGTTTGGACATGGTGCCGGTCACATAAATCCACTAGGCGCAGTGCATCCTGGATTAATCTATAATGCTTCTGAGATTGACTATGTAAAGTTTTTGTGCGGCCAAGGTTATACTACCGAGTTGCTCCAACGAGTCTCGGAAGACAACAACACTTGTTCTTCAAACAATTCCGACACAGTGTTCGACCTTAACTATCCTTCCTTTGCTCTGTCCACAAATATCTCGAAGCCAATTAACCAAATTTACAAAAGGAGTGTCACCAATGTTGGATCAAAAAATGCAACATATAAAGCCACCATAATTAATCCATGGAATAATCTTGAGATCAAAGTTAAGCCTTTTATTCTTTCATTCAAGAATTTGGGAGAGGAGCAAAGCTTTGAGCTTACAATTAAAGGAAGAATTAGTAAAAATATTCAATCAGCTTCTTTGGTATGGGATGATGGGAAACACAAAGTGAGGAGTCCAATAACAGTATTTGATGCTAATATTCACTCTTCTTAA 2226 43.22 MSSLISRLLFLNFCFSILFFSSNSQDNDSQKTYIVYMGSHPKGKVSASSHHIRLLKETIGSTFPPHSLLHSYKRSFNGFVAKLTEAEARKVSEMEGIISVFPNGKKQLHTTRSWDFMGFSEQVKRVPAVESNVIVGVFDSGIWPESPSFDHTGYGPPPPKWKGSCEVSANFSCNNKIIGARSYRSDGKYPEGDIKGPRDSDGHGTHTASIVAGGLVRQASMLGLALGTARGGVPSARIAVYKVCWSDGCTDADILAAFDDAIADGVDIISGSLGGSRVKDYFNDSIAIGSFHAMKKGILSSLAVGNNGPDFTTIVNFSPWSLSVAATTTDRKFETKVKLGDGKEFNGVSINTFDINGKQIPLAYAGDIPKAPFDSSVSRMCFENTVDLELVKGKIVVCDSLTVPEGVVAVKGAVGIIMQDDSSQDDTNSFSLPASHLGPKPGALILSYINSTNSLPTATIMKSTERKRKRAPFVASFSSRGPNPITPNILKPDLCGPGVEILAAWPPLASPSGAEEDSRRVVYNILSGTSMACPHVTAAAAYVKSFHPTWSPAALKSALITTAFPMSLKRNPDREFGHGAGHINPLGAVHPGLIYNASEIDYVKFLCGQGYTTELLQRVSEDNNTCSSNNSDTVFDLNYPSFALSTNISKPINQIYKRSVTNVGSKNATYKATIINPWNNLEIKVKPFILSFKNLGEEQSFELTIKGRISKNIQSASLVWDDGKHKVRSPITVFDANIHSS 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32942669 32949876 + CcPI632755_05g024490.1 Cco05g2449 180077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2449 741 Gene3D - 330 467 - -
Cco05g2449 741 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 731 IPR045051 -
Cco05g2449 741 Gene3D - 606 735 - -
Cco05g2449 741 CDD PA_subtilisin_like 337 460 - -
Cco05g2449 741 Pfam Subtilase family 131 579 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco05g2449 741 Pfam Fibronectin type-III domain 636 733 IPR041469 -
Cco05g2449 741 Gene3D Peptidase S8/S53 domain 132 602 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco05g2449 741 ProSitePatterns Serine proteases, subtilase family, serine active site. 528 538 IPR023828 -
Cco05g2449 741 Pfam Peptidase inhibitor I9 32 109 IPR010259 -
Cco05g2449 741 ProSiteProfiles Serine proteases, subtilase domain profile. 113 589 - -
Cco05g2449 741 CDD Peptidases_S8_3 106 563 IPR034197 -
Cco05g2449 741 FunFam Subtilisin-like protease SBT1.5 132 350 - -
Cco05g2449 741 SUPERFAMILY Subtilisin-like 108 593 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco05g2449 741 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 109 IPR037045 -
Cco05g2449 741 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Cco05g2449 741 PRINTS Subtilisin serine protease family (S8) signature 527 543 IPR015500 -
Cco05g2449 741 PRINTS Subtilisin serine protease family (S8) signature 199 212 IPR015500 -
Cco05g2449 741 FunFam Subtilisin-like protease SBT5.3 21 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0101 Cco-Chr1:834855 Cco05g2449 Cco-Chr5:32942669 2.60E-293 dispersed
Cco05g2449 Cco-Chr5:32942669 Cco07g0368 Cco-Chr7:4006329 3.90E-271 dispersed
Cco05g2449 Cco-Chr5:32942669 Cco04g1202 Cco-Chr4:27448513 2.70E-163 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2449 - - - 0.0