Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2453 ATGGGGGTGCCTGCAACTGCAACTCTGGGGGATGATTTTCTGAGGGAAAGAGCGGCTAAGATGAGAGAATCACTGCAAAAGAGCCAAAATATTACTGATAACGTTGTCACCATTCTCGGTTCCTTTGACCACCGTCTTTCAGCTCTCGAAACCGCCATGCGCCCTACTCAGATCAGAACCAATTCTATTCGTAAAGCTCACGAGAACATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCACAATTTGATCTCTCTCGTCAGGCAGAAACGAAAATACTTAGAGGGCCACATGAGGATTTGGAAAGTTATCTCGGGGCTATTGGTCAATTAAGAAACATTATCAAATTCTTTAGTAGCCATAAAGGTTTTAAGAGTAGCGAGGTAGTGCTTAACCAGGCAAATACGCTGCTTGCAAAAGCCATCTCAAAGCTGGAAGATGAGTTCAGACAGCTATTATCTTCCTACAGCAAACCTGTGGAGCCTGAGCGTCTTTTCGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGAATCTCCTGGTCATGATTCAGGTGGAAAGAATCACTCCTCAAATCCTCATTCTGCACATCATGATAATAGCTTAGAGACTGCTGTCTACACACCTCCCACTCTCATACCACCACGTGTTCTACCACTGCTGCATGATTTATCACAGCAAATGGTTCAAGCTGGTCATCAACAACAAATTTTAAAAATCTACAGGGATACCCGTTCAGTCGTTCTGGAAGAAAGCCTACGGAAATTAGGAGTTGAAAAACTTAGCAAAGATGATGTCCAGAAGATGGCATGGGAGGTTTTAGAGGCAAAAATTGGGAACTGGATTCATTTTATGCGTATTGCAGTTAAACTGCTATTTGCTGGTGAACGAAAAGTTTGCGATCAAATATTTGAAGGCTTTGAATCGCTTAGAGACCAATCATTTGCAGAGGTTACAAGTAGTAGTGTGTCTGTGCTATTCAGTTTTGGGGAGGCGATTGCAAAAAGCAAGAGGTCACCAGAAAAGTTGTTTGTACTTTTGGACATGTATGAAATTATGCGAGAGCTTCACTCTGAGATAGAGACAATTTTTAAGGGTAAAGCATGCAATGAGATCAAGGAATCTGCATCGGGTTTGACCAAACGGCTTGCTCAGACAGCTAAGGATACATTTGGTGATTTTGAGGAAGCTGTGGAAAAAGATGCCACAAAAACTGCGGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATTAATTATGTCAAATTTCTTTTTGACTATCAAGCAACCTTGAAGCAACTTTTTCAAGAATTTGAAGATAGTGGTCAAACGAATTCGGAATTGGCCACTGTCACAATGCAAATAATGCAGGCTCTTCAATCTAATTTGGATGGAAAATCTAAGCATTACAGAGACCCTGCTTTGACTCACTTATTCCTCATGAACAACATTCACTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGGGACGATTGGGTTCAGAGACATAGGAGGGTCGTACAACAACATGCAAATCAGTATAAAAGGAATGCTTGGTCAAAGATCCTGCAATGTCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGTGTACCTGGTATAGATGGAGGAAATAGTAGCGGAGTTTCTAAGGCGCTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCTGATACTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTAAAACGTTTTGGGCCACTGATTGATGGTGGAAAGAATCCCCAAAAGTATGTCAGATACCAGCCAGAGGATCTCGAAAGGATGCTCGGAGAATTTTTCGAAGGGAAGAACTTGAGTGAACCCAAGCGGTAG 1962 42.2 MGVPATATLGDDFLRERAAKMRESLQKSQNITDNVVTILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQAETKILRGPHEDLESYLGAIGQLRNIIKFFSSHKGFKSSEVVLNQANTLLAKAISKLEDEFRQLLSSYSKPVEPERLFDCLPKSLQPSSESPGHDSGGKNHSSNPHSAHHDNSLETAVYTPPTLIPPRVLPLLHDLSQQMVQAGHQQQILKIYRDTRSVVLEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEIETIFKGKACNEIKESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEDSGQTNSELATVTMQIMQALQSNLDGKSKHYRDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRVVQQHANQYKRNAWSKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSKALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRFGPLIDGGKNPQKYVRYQPEDLERMLGEFFEGKNLSEPKR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32970871 32978502 - CcPI632755_05g024530.1 Cco05g2453 180081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2453 653 MobiDBLite consensus disorder prediction 173 201 - -
Cco05g2453 653 Pfam Exo70 exocyst complex subunit C-terminal 281 640 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cco05g2453 653 Gene3D Exocyst complex component Exo70 78 653 - -
Cco05g2453 653 Pfam Exocyst complex component Exo70 N-terminal 73 155 - -
Cco05g2453 653 FunFam Exocyst subunit Exo70 family protein 88 651 - -
Cco05g2453 653 PANTHER EXOCYST COMPLEX PROTEIN EXO70 17 646 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cco05g2453 653 MobiDBLite consensus disorder prediction 171 201 - -
Cco05g2453 653 SUPERFAMILY Cullin repeat-like 80 644 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1257 Cco-Chr4:27928435 Cco05g2453 Cco-Chr5:32970871 2.60E-276 dispersed
Cco05g2453 Cco-Chr5:32970871 Cco07g1527 Cco-Chr7:29318019 9.40E-104 dispersed
Cco05g2453 Cco-Chr5:32970871 Cco03g0205 Cco-Chr3:2123041 5.20E-78 transposed
Cco05g2453 Cco-Chr5:32970871 Cco02g2189 Cco-Chr2:34543628 5.20E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2453 K07195 - csv:101206262 1219.14