Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2471 ATGAACTCAGTTCCATTCATTTGCCTTCTCCTTCTCTCTCTCCTTCTCGCCGGAGCTTCCGATTCTTCTCCGCCGTCTACCGCCCTCTGTAAATCCACTCTCTACCCTAAGCTTTGCCGCTCCATTCTCTCATCCATCCGGTTCTCCCCCTCCGATCCATACGGCTACGGGAAATTCTCCGTCAAGAAATGTCTCAAACAAGCGATCAAAATGTCGAGCGTAATCAGCGACTATCTCGACCGAGGACGCGATTCGAGGCTGAATCAGCGGGAGGCCGGCGCTCTGCATGACTGCAGAGAACTTTCCGATTTGAATGTGGAGTTTCTTCGGTCGATCCAGGGCGTATTGGAGGCGGCGGAGGGCGTCGATGAGGAACTGGTGGAGCGCGTTGAGAGTATTCTGAGCGCGATCGTGACGAACGGCCAGACTTGTATCGACGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTATCGGCGCCGCTGTCGAGCGCCGGAGAGCTGTACAGTGTGTCATTGGGATTGGTTTCGAACTCGCTGTCGCGACGGTGGAAGAAGCGGCGGCAGAAGGGAAATGGAGATGGAGGGAATTTTCCGGCGGGTGCGCGGAGCAGAGAGCCATTGAACACGCTGATCAAGGGACTACATAAAATGGGATCATGCAACAACCAATCCACAAAGTGCTCAGGAAGGAAGCGTTTGTTAACTGATTTAGGCAGCACAGGAATTTTGATCAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGAGATGCAATTGCATTTGCTCCCAACAACTCAATGCCTCAAGATGGCTACTTTGTTATCTACGTTAGAGAAGGATACTATGAAGAATACGTCGTCATCCCCAAATTCAAAACCAATGTAATGCTCATCGGAGACGGCATTAATCGAACCATCATCACGGGGAACCATAGTGTCGTCGATGGTTGGACGACTTATAACTCTTCAACCTTCACTGTTTGTGGGGATGGATTTGTTGCAATAGACATGACATTCAGGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTAGCAGTAAGAAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGTTTTGAAGGATATCAAGACACTCTTTATGTTCATTCCCTAAGACAATTCTATAGAGAATGTGACATTTATGGCACTGTAGATTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAGCAATGCAATCTCTATGCCAGAAAGCCACTCCCCAACCAAAAAAACGCCTTCACCGCGCAGGGCCGAACCGATCCGAACCAAAACACAGGCATCTCGATCCACAACTGCAGCATCAAGGCTGCACCAGACTGGGCGATGGATTGGAATGCGACGACGACGACGACGACGAACTACCTCGGGCGACCGTGGAAACAGTACTCAAGGACAGTGTACATGCAGTCTTATATTGGGGATTTGATAAGCCCAGTGGGATGGTTGGAATGGAATGGAACAGTAGGATTAGAGACATTGTATTATGGGGAGTTTGAGAATTATGGACCAGGAGCTAACACAAGCTTGAGGGTGAATTGGCCTGGATATAGCTTGATGAATCTTACACAAGCTATGAATTTTACTGTCTATAATTTCACTATGGGAGATACTTGGCTGCCTTATACTGATATACCTTTCTCTGGAGGTTTGTTAATTAAGTGA 1710 48.36 MNSVPFICLLLLSLLLAGASDSSPPSTALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKKCLKQAIKMSSVISDYLDRGRDSRLNQREAGALHDCRELSDLNVEFLRSIQGVLEAAEGVDEELVERVESILSAIVTNGQTCIDGLVESRSSLGNALSAPLSSAGELYSVSLGLVSNSLSRRWKKRRQKGNGDGGNFPAGARSREPLNTLIKGLHKMGSCNNQSTKCSGRKRLLTDLGSTGILINNTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVREGYYEEYVVIPKFKTNVMLIGDGINRTIITGNHSVVDGWTTYNSSTFTVCGDGFVAIDMTFRNTAGPEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCSIKAAPDWAMDWNATTTTTTNYLGRPWKQYSRTVYMQSYIGDLISPVGWLEWNGTVGLETLYYGEFENYGPGANTSLRVNWPGYSLMNLTQAMNFTVYNFTMGDTWLPYTDIPFSGGLLIK 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33141794 33148079 - CcPI632755_05g024710.1 Cco05g2471 180099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2471 569 CDD PMEI-like_3 28 179 - -
Cco05g2471 569 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Cco05g2471 569 SUPERFAMILY Pectin lyase-like 245 565 IPR011050 -
Cco05g2471 569 Pfam Pectinesterase 250 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco05g2471 569 NCBIfam pectinesterase inhibitor domain 3 152 IPR006501 GO:0004857(InterPro)
Cco05g2471 569 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857(InterPro)
Cco05g2471 569 FunFam Pectinesterase 244 566 - -
Cco05g2471 569 Gene3D - 244 566 IPR012334 -
Cco05g2471 569 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Cco05g2471 569 PANTHER PECTINESTERASE 8 556 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco05g2471 569 SMART PMEI_2 21 176 IPR006501 GO:0004857(InterPro)
Cco05g2471 569 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0116 Cco-Chr2:1292958 Cco05g2471 Cco-Chr5:33141794 4.80E-125 dispersed
Cco05g2471 Cco-Chr5:33141794 Cco09g0539 Cco-Chr9:4706801 6.20E-152 dispersed
Cco01g0669 Cco-Chr1:6941135 Cco05g2471 Cco-Chr5:33141794 3.10E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2471 K01051 - csv:101206112 1019.61