Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2472 ATGAGAATAATCTCTCCGCCTTCTGCCTCTTCTTCTTCTTCTTCATCCTCTTCTTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCCGCTCCTCACCGTCCGCAATCCGAGAAAACCAGAGCCAAACGACGGAGGAAGAATCAAGACGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGAATCAACAACGCCGCTGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGTATATTTGGGAGCTTACGATAACGAGGAAGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAATACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTTTCGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGCTTTTCAAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTTGGAAGCAAATATCTTTATTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATCGAGTATAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAATCATCAGTTCTTCAAGCAGCAGAGCAAGCAGAGGATCCCAATTATTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAACAACAACAGGATCAGCAACGACAACAACAAACGACATTTGCGGGCCCGCCCGACCTTCAGTTCTCGATCGAGAACAACCCGGGAATGGCTGTCATGGAAGAACCACCAACACAAGACGATCATGGTCTACATTGGTCCTTTTTAGACACGGGATTATTCGTGCAGGTCCCTGACCTCCCACTCGAGAAATCAAGCGAATTGGCCGACCTATACTTCAACGAGATCGGGTTCGAGGACGACATTGGATTGATATTCGAAACGAGCTTAGAGAACAAGAACTGTGAGGGAGATGATCATAATAACAATAATAATAATAATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGTGAGAAAATCAGATTGTTCTCAACAACTACTTCGCCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1281 47.54 MRIISPPSASSSSSSSSSSSSSCVGSDSGIHNNNLAAAPHRPQSEKTRAKRRRKNQDETKCQIHNHNANGINNAAASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKSSVLQAAEQAEDPNYSPASSEGEVVQQQQDQQRQQQTTFAGPPDLQFSIENNPGMAVMEEPPTQDDHGLHWSFLDTGLFVQVPDLPLEKSSELADLYFNEIGFEDDIGLIFETSLENKNCEGDDHNNNNNNNNNNVGKMEVNCSEKIRLFSTTTSPSSSSITTSVSCEFRV 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33153523 33157651 - CcPI632755_05g024720.1 Cco05g2472 180100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2472 426 CDD AP2 84 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Cco05g2472 426 MobiDBLite consensus disorder prediction 1 70 - -
Cco05g2472 426 SUPERFAMILY DNA-binding domain 83 152 IPR016177 GO:0003677(InterPro)
Cco05g2472 426 MobiDBLite consensus disorder prediction 260 300 - -
Cco05g2472 426 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 290 - -
Cco05g2472 426 PRINTS Ethylene responsive element binding protein signature 226 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 MobiDBLite consensus disorder prediction 260 302 - -
Cco05g2472 426 Gene3D AP2/ERF domain 185 246 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 Gene3D AP2/ERF domain 84 152 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 SMART rav1_2 84 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 SMART rav1_2 186 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 ProSiteProfiles AP2/ERF domain profile. 84 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 ProSiteProfiles AP2/ERF domain profile. 186 244 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 Pfam AP2 domain 185 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 Pfam AP2 domain 85 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 FunFam AP2-like ethylene-responsive transcription factor 83 152 - -
Cco05g2472 426 SUPERFAMILY DNA-binding domain 185 246 IPR016177 GO:0003677(InterPro)
Cco05g2472 426 CDD AP2 185 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2472 426 MobiDBLite consensus disorder prediction 1 40 - -
Cco05g2472 426 FunFam AP2-like ethylene-responsive transcription factor 185 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2472 Cco-Chr5:33153523 Cco06g1457 Cco-Chr6:25035595 3.50E-75 dispersed
Cco09g0332 Cco-Chr9:2933280 Cco05g2472 Cco-Chr5:33153523 2.00E-72 transposed
Cco10g1567 Cco-Chr10:28876204 Cco05g2472 Cco-Chr5:33153523 3.00E-54 transposed
Cco05g2472 Cco-Chr5:33153523 Cco08g1029 Cco-Chr8:22126054 3.00E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59372 PF00847 AP2 1.50E-12 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2472 - - - 0.0