Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2472 | ATGAGAATAATCTCTCCGCCTTCTGCCTCTTCTTCTTCTTCTTCATCCTCTTCTTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCCGCTCCTCACCGTCCGCAATCCGAGAAAACCAGAGCCAAACGACGGAGGAAGAATCAAGACGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGAATCAACAACGCCGCTGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGTATATTTGGGAGCTTACGATAACGAGGAAGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAATACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTTTCGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGCTTTTCAAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTTGGAAGCAAATATCTTTATTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATCGAGTATAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAATCATCAGTTCTTCAAGCAGCAGAGCAAGCAGAGGATCCCAATTATTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAACAACAACAGGATCAGCAACGACAACAACAAACGACATTTGCGGGCCCGCCCGACCTTCAGTTCTCGATCGAGAACAACCCGGGAATGGCTGTCATGGAAGAACCACCAACACAAGACGATCATGGTCTACATTGGTCCTTTTTAGACACGGGATTATTCGTGCAGGTCCCTGACCTCCCACTCGAGAAATCAAGCGAATTGGCCGACCTATACTTCAACGAGATCGGGTTCGAGGACGACATTGGATTGATATTCGAAACGAGCTTAGAGAACAAGAACTGTGAGGGAGATGATCATAATAACAATAATAATAATAATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGTGAGAAAATCAGATTGTTCTCAACAACTACTTCGCCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA | 1281 | 47.54 | MRIISPPSASSSSSSSSSSSSSCVGSDSGIHNNNLAAAPHRPQSEKTRAKRRRKNQDETKCQIHNHNANGINNAAASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKSSVLQAAEQAEDPNYSPASSEGEVVQQQQDQQRQQQTTFAGPPDLQFSIENNPGMAVMEEPPTQDDHGLHWSFLDTGLFVQVPDLPLEKSSELADLYFNEIGFEDDIGLIFETSLENKNCEGDDHNNNNNNNNNNVGKMEVNCSEKIRLFSTTTSPSSSSITTSVSCEFRV | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33153523 | 33157651 | - | CcPI632755_05g024720.1 | Cco05g2472 | 180100 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2472 | 426 | CDD | AP2 | 84 | 151 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 23 | - | - | |
Cco05g2472 | 426 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
Cco05g2472 | 426 | SUPERFAMILY | DNA-binding domain | 83 | 152 | IPR016177 | GO:0003677(InterPro) | |
Cco05g2472 | 426 | MobiDBLite | consensus disorder prediction | 260 | 300 | - | - | |
Cco05g2472 | 426 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 17 | 290 | - | - | |
Cco05g2472 | 426 | PRINTS | Ethylene responsive element binding protein signature | 226 | 246 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | PRINTS | Ethylene responsive element binding protein signature | 85 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | MobiDBLite | consensus disorder prediction | 260 | 302 | - | - | |
Cco05g2472 | 426 | Gene3D | AP2/ERF domain | 185 | 246 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | Gene3D | AP2/ERF domain | 84 | 152 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | SMART | rav1_2 | 84 | 156 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | SMART | rav1_2 | 186 | 250 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | ProSiteProfiles | AP2/ERF domain profile. | 84 | 150 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | ProSiteProfiles | AP2/ERF domain profile. | 186 | 244 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | Pfam | AP2 domain | 185 | 236 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | Pfam | AP2 domain | 85 | 142 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | FunFam | AP2-like ethylene-responsive transcription factor | 83 | 152 | - | - | |
Cco05g2472 | 426 | SUPERFAMILY | DNA-binding domain | 185 | 246 | IPR016177 | GO:0003677(InterPro) | |
Cco05g2472 | 426 | CDD | AP2 | 185 | 246 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2472 | 426 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Cco05g2472 | 426 | FunFam | AP2-like ethylene-responsive transcription factor | 185 | 246 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2472 | Cco-Chr5:33153523 | Cco06g1457 | Cco-Chr6:25035595 | 3.50E-75 | dispersed | |
Cco09g0332 | Cco-Chr9:2933280 | Cco05g2472 | Cco-Chr5:33153523 | 2.00E-72 | transposed | |
Cco10g1567 | Cco-Chr10:28876204 | Cco05g2472 | Cco-Chr5:33153523 | 3.00E-54 | transposed | |
Cco05g2472 | Cco-Chr5:33153523 | Cco08g1029 | Cco-Chr8:22126054 | 3.00E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59372 | PF00847 | AP2 | 1.50E-12 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2472 | - | - | - | 0.0 |