Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2481 ATGGTGAAATTTGACCGGAAAAGAGTGGGCCAGACGGTCATGAGCCTTGGCGGGAATGGTGTTGGCCAAGTTTTGGTCGCCGTGGCGGCGGCTATCCTCGTCCGTCTTTTCTCTGGACCTGAACCTGCTCTTCCACCGGAATACGATATCGAGCTCGAGGACGGGGAGAAGGGAGATGGAGACATTGAAGTCGGTGAAGAAGCTCCAGCCTCTGGGAAAGTTACGCCGGTGAAAATCCGGTGGTGCAATATCTCGTGCTCTCTCTCTGATAAATCCTCCAAATCAGTAAGATGGCTGCTTAAGAATGTTAGCGGGGAAGCGAAACCAGGAAGATTATTGGCAATAATGGGACCGTCAGGTTCAGGAAAAACAACGTTGCTCAATATTCTGGCCGGTCAGCTAGCGGCTTCACCACGGTTACATCTCTCAGGCATTATATATCTCAATGGAAAGGCTGATTCAAATAAGAGAGCTTACAGGTTGGCATATGTGAGACAGGAGGACCTCTTTTTCTCACAGCTAACTGTGCGAGAGACACTGAAGCTTGCTGCTGAACTTCAGCTTACTGAGATATCTTCTGTAGAAGAGAGGGAAGAATATGTTAACAATCTGCTGTTGAAACTAGGTTTGGTAAGCTGTGCTGAATCATGTGTTGGTGATGCAAGAGTGCGTGGGATCAGTGGGGGTGAAAAGAAACGCTTGTCTCTTGCATGTGAACTGATTGCGAGCCCATCTGTTATATTTGCAGATGAACCTACTACAGGACTTGATGCATTCCAGGCTGAAAAAGTAGTGGAGACACTTCAACAACTTGCGAAGGATGGGCACACTGTAATCTGCTCCATACATCAGCCAAGAGGTTCTGTGTATAGCAAATTTGATGATATCATATTGTTGACAGAGGGTGCTCTTGTCTATGCTGGTCCTGCTCACGAGGAACCTTTGGAATACTTCTCTAAATTTGGGTATAATTGCCCGGACCATGTGAATCCCGCTGAGTTTCTGGCAGATCTTATATCAATTGACTATAGTTCTGCAGACAGCGTGTACTCCTCTCAGAAGAGGATCTGTGGTCTTGTTGAATCATTCTCACGATACTCTTCAACAATTTTGTATGCAAACCCAATTGAGAAAAGGCAGGTCTTGGCTGGTAAAGAATTCAGGAAAAGTAAGCTTTTGAAAAACGGAGGTTGGTGGAGGCAATTCTGCTTGCTCCTCAAGCGTGCATGGATGCAGGCTTCTCGGGATGGACCAACAAATAAGGTTCGAGCACGAATGTCCATTGCATCAGCTATCATATTTGGTTCAGTCTTTTGGAGAATGGGAAGATCTCAAACATCAATCCAGGATAGGATGGGTTTGCTTCAGGTTGCAGCAATCAACACTGCAATGGCTGCTCTCACCAAGACTGTGGGTGTTTTTCCAAAGGAACGTGCAATTGTTGACAGGGAGCGTGCAAAGGGATCTTATACATTAGGCCCATATTTGCTTTCTAAATTATTGGCCGAGATCCCAATTGGAGCTGCCTTTCCACTGGTATTTGGGGCTATTTTGTACCCCATGGCTCGTCTTCACCCAACAGCATCAAGATTTGGGAAGTTCTGCAGTATTGTCACGGTTGAATCTTTTGCTGCGTCTGCTATGGGGCTCACTGTCGGGGCTATGGTTCCTAGCACAGAAGCAGCAATGGCAGTGGGACCCTCACTCATGACAGTTTTCATTGTATTTGGTGGCTATTATGTCAATGCAGACAACACACCGATCATCTTTCGTTGGATTCCTAGCGTTTCTCTTATAAGATGGGCCTTTCAAGGGCTTTGCATCAATGAGTTTAATGGTCTTCAATTTGATTGTCAACATTCATTCGATGTTCAAACTGGAGAACAGGCACTCAAACGACTCTCTTTTGGTCAAAGTCGTATTAGGGATACATTGATAGCTCAAAGTAGAATACTTGTGTTCTGGTATTATACCACATACCTTCTCCTAGAAAAAAACAAGCCCAAATACCAGCAGCTTGAGCTACCGCCTGTCGACGAAATACAGCCCGATCTACAAATTGAAACCTTTGACAATGACAACTTACACAAAACCCAACGTGAGGGAGATCTACAAATTGAAACCTTTGACAATGACAACTTGGACAAAACTCAACCTGAGGGAGATCAACAAATGGAAACCGTTGATAATGAGAACTTGGACAAAACCCAACCTGAAGGAGATCTACAAATCAAGTCCTTTGACAATGACAACATGGAAAAACCCCAACTTGAGGAACCACCATCTCTCGATCAAGTTGAACCGAAGGATGATGATATTGAAACACCCCAAATCGATCAAATCCGACCATTTATTCTAGAAGGTGCTAAGTAA 2373 44.84 MVKFDRKRVGQTVMSLGGNGVGQVLVAVAAAILVRLFSGPEPALPPEYDIELEDGEKGDGDIEVGEEAPASGKVTPVKIRWCNISCSLSDKSSKSVRWLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNILAGQLAASPRLHLSGIIYLNGKADSNKRAYRLAYVRQEDLFFSQLTVRETLKLAAELQLTEISSVEEREEYVNNLLLKLGLVSCAESCVGDARVRGISGGEKKRLSLACELIASPSVIFADEPTTGLDAFQAEKVVETLQQLAKDGHTVICSIHQPRGSVYSKFDDIILLTEGALVYAGPAHEEPLEYFSKFGYNCPDHVNPAEFLADLISIDYSSADSVYSSQKRICGLVESFSRYSSTILYANPIEKRQVLAGKEFRKSKLLKNGGWWRQFCLLLKRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYTLGPYLLSKLLAEIPIGAAFPLVFGAILYPMARLHPTASRFGKFCSIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPSVSLIRWAFQGLCINEFNGLQFDCQHSFDVQTGEQALKRLSFGQSRIRDTLIAQSRILVFWYYTTYLLLEKNKPKYQQLELPPVDEIQPDLQIETFDNDNLHKTQREGDLQIETFDNDNLDKTQPEGDQQMETVDNENLDKTQPEGDLQIKSFDNDNMEKPQLEEPPSLDQVEPKDDDIETPQIDQIRPFILEGAK 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33228156 33234079 + CcPI632755_05g024810.1 Cco05g2481 180109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2481 790 FunFam ABC transporter G family member 7 77 316 - -
Cco05g2481 790 ProSitePatterns ABC transporters family signature. 226 240 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g2481 790 MobiDBLite consensus disorder prediction 763 777 - -
Cco05g2481 790 Gene3D - 71 316 IPR027417 -
Cco05g2481 790 ProSiteProfiles Guanylate kinase-like domain profile. 110 316 IPR008144 -
Cco05g2481 790 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 77 621 IPR050352 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cco05g2481 790 Pfam ABC transporter 100 254 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g2481 790 Pfam ABC-2 type transporter 283 339 IPR043926 GO:0140359(InterPro)
Cco05g2481 790 Pfam ABC-2 type transporter 400 611 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cco05g2481 790 MobiDBLite consensus disorder prediction 728 778 - -
Cco05g2481 790 CDD ABCG_EPDR 76 308 - -
Cco05g2481 790 SMART AAA_5 109 303 IPR003593 GO:0016887(InterPro)
Cco05g2481 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 312 IPR027417 -
Cco05g2481 790 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 79 326 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2481 K05681 - - csv:101211066 1390.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2481 Cco-Chr5:33228156 Cco10g0625 Cco-Chr10:8537331 6.30E-78 dispersed
Cco11g0739 Cco-Chr11:8178172 Cco05g2481 Cco-Chr5:33228156 3.30E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g402 . . . . . . . . Cmo04g01536 Cmo18g00981 . . Car04g01524 Car18g00896 . Cpe09g00340 Cpe01g01308 Bhi07g01235 . . . Hepe01g1135 . . Cla05g02253 Cam05g2419 Cec05g2436 Cco05g2481 Clacu05g2408 Cmu05g2274 Cre05g2392 Cone13ag0777 Cone19ag0780 . . Lsi04g00196 Csa05g02673 Chy10g01202 Cme10g00198 . Blo11g00741 Bda07g01446 . Bpe11g01615 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005825 2 2 2 0 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 2 1 0 1 1 1 0 1 2 3 1 39