Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2486 ATGTCTCGGACGCTTTTGGTTTTGATTGTTTGTCTGAGTGCGTTGCGGTTGGGAGCTTCGTTGGGATCGCGTTCGATCCTTAGAACAGTTGCTGATAAGAGCGGGGATTCTGAAGATTACGCCGTTGATTTGAACGCCACCAATTTCGATGCGGTTCTCAGGGATACTCCAGCTACCTTTGCGGTTGTTGAATTCTTTGCTCACTGGTGCCCTGCTTGCAGAAACTATAAGCCCCATTATGAAAAAGTTGCTAGGCTTTTCAATGGACCGAATGCTGTGCACCCAGGAAAAGTATTAATGACAAGAGTGGACTGTGCATTGAAGATAAATACTGATCTCTGCGATAAATTTTCGGTGGGCCACTATCCTATGCTCTTTTGGGGTCCTCCTTCCAAATTTGTGTCTGGCAGTTGGGATCCTAAGCAAGATAAAAGTGAAATACGTAATATTGATAATGGACGAACTGCAGAAAAGTTACTAAGTTGGATAAACAAGCAAATGGGCAGCTCAATTGGCTTGGATGATGAAAAATTTGAAAATGAGCAGCATCTGTCATCCAATATCTCAGATCCAGGACAGATTGCTCGAGCAGTCTATGATGTCGAGGAGGCAACATCCACTGCCTTTGATATTATCTTGGAACACAAGATGATCAAGTCTGAAACTCGAGCATCCCTTATAAAGTTTCTTCAACTTCTGGTGGTTCATCATCCTTCTGTAAGGTGTCGAAAAGGTAGTGCAGAGATACTTGTAAACTTCGACGAGTTGAACCCTGCAGATATGAAACAAGAAGAGGTTGCTAGTGAAAAGGGTGCTGTTAAGAACTTTCAGATATGTGGAAAAGATGTTCCTCGTGGATATTGGATTTTCTGCCGTGGTAGCAAGAACGATACGAGGGGATTTAGTTGTGGATTATGGGTTCTACTGCATTCTCTTTCTGTGAGAATTGAGGACGGAGAAAGCCAGTTTGCATTCACAACCATCTGCGATTTCATCCATAACTTCTTTGTTTGTGAGGAATGTCGCCAGCACTTTTACGAAATGTGTTCAAGCGTGTCTAGTCCTTTCAACAAAGCTCGTGACTTTGCCCTCTGGTTGTGGAGGGCACACAACAAAGTCAATGAAAGATTATTGAAAGAAGAAGAAACCATGGGAACCGCAGATCCAAAATTTCCAAAGATGATCTGGCCTCCGAGGCAACTTTGCACGTCGTGCTATCGTTCTCATAGCAGCCAGCAGCAGATCGAATGGGATGTGGATGAAGTACATAAATTCTTGATCAACTATTATGGTATAACACTCGCCTCTCTCTACAAAAGCAACAGTGCCCTTGGGAATGTTGTTGCCAATGGGGTTCTTGATGAGCCAACGGCTTCAACAAATGCGGTCGCGGTGCCGGTGGGGGCTGCATTGGCGATTGCTCTTGCAAGCTGTGCCTTTGGAGTGCTCGCTTGTTACTGGCGTTCACAGCAGAAGAGTCGGAAGCCAAGGAGAAGCTCGGAGCTAAGGCTTTCAGAAGGGTATGACTAG 1530 44.84 MSRTLLVLIVCLSALRLGASLGSRSILRTVADKSGDSEDYAVDLNATNFDAVLRDTPATFAVVEFFAHWCPACRNYKPHYEKVARLFNGPNAVHPGKVLMTRVDCALKINTDLCDKFSVGHYPMLFWGPPSKFVSGSWDPKQDKSEIRNIDNGRTAEKLLSWINKQMGSSIGLDDEKFENEQHLSSNISDPGQIARAVYDVEEATSTAFDIILEHKMIKSETRASLIKFLQLLVVHHPSVRCRKGSAEILVNFDELNPADMKQEEVASEKGAVKNFQICGKDVPRGYWIFCRGSKNDTRGFSCGLWVLLHSLSVRIEDGESQFAFTTICDFIHNFFVCEECRQHFYEMCSSVSSPFNKARDFALWLWRAHNKVNERLLKEEETMGTADPKFPKMIWPPRQLCTSCYRSHSSQQQIEWDVDEVHKFLINYYGITLASLYKSNSALGNVVANGVLDEPTASTNAVAVPVGAALAIALASCAFGVLACYWRSQQKSRKPRRSSELRLSEGYD 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33272213 33276695 - CcPI632755_05g024860.1 Cco05g2486 180114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2486 509 ProSitePatterns Thioredoxin family active site. 62 80 IPR017937 -
Cco05g2486 509 FunFam Sulfhydryl oxidase 28 197 - -
Cco05g2486 509 Pfam Erv1 / Alr family 303 385 IPR017905 GO:0016972(InterPro)
Cco05g2486 509 Gene3D ERV/ALR sulfhydryl oxidase domain 289 437 IPR036774 GO:0016972(InterPro)
Cco05g2486 509 ProSiteProfiles ERV/ALR sulfhydryl oxidase domain profile. 294 396 IPR017905 GO:0016972(InterPro)
Cco05g2486 509 SUPERFAMILY FAD-dependent thiol oxidase 295 398 IPR036774 GO:0016972(InterPro)
Cco05g2486 509 Gene3D Glutaredoxin 28 191 - -
Cco05g2486 509 FunFam Sulfhydryl oxidase 289 439 - -
Cco05g2486 509 SUPERFAMILY Thioredoxin-like 41 168 IPR036249 -
Cco05g2486 509 PANTHER QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE 3 498 IPR039798 GO:0003756(PANTHER)|GO:0005615(PANTHER)|GO:0006457(PANTHER)|GO:0016971(InterPro)|GO:0016971(PANTHER)|GO:0030173(PANTHER)
Cco05g2486 509 Pfam Thioredoxin 43 132 IPR013766 -
Cco05g2486 509 ProSiteProfiles Thioredoxin domain profile. 19 168 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2486 K10758 - - csv:101211805 938.332
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g398 . . . . . . . . Cmo04g01541 Cmo18g00987 . Cma18g00980 Car04g01528 Car18g00902 . Cpe09g00336 Cpe01g01311 . . . . . . . Cla05g02257 Cam05g2424 Cec05g2441 Cco05g2486 Clacu05g2413 Cmu05g2280 Cre05g2398 Cone13ag0784 Cone19ag0787 . . Lsi04g00200 Csa05g02669 Chy10g01198 Cme10g00203 Blo06g00991 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003860 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 2 9 1 45