Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2498 ATGAAGGACCGCTCTCCTTCCTCCAATGGCGCTGTTTACGTCCCTCCTCACATCCGTCTCCGCTCCGTCGTTACCGCTTCTTATAATTCCTCTGCTGTTTCCGCTGTTGACTGCAAGCTCAAGGCGGCTCCAGCCTCGCTGCTCGATTCAGGAACCACTGCTTTCCCTTGCCTTCATGCTCGATCTGAAGAACTGCTTCCAACGGGGAACTCGCGTTTTAATTCCGTGCAGTATGATTCGGCCTACGACGATGGGACTCCTGTGGAGAGTTGGACTTGTAATTTCGAGTGTTCGCATCAATCGGGTTTTCAAACTTCTGTCAACATTGATTTGTGGAAAAGGAAGTTAGCATTACTTTTACGTGACAAGGAGAAGCAAGAGTTAATTTCAAGGGAGAAAAAAGATAGACAAGACTTTGAGGAAATAGCTGCTTTGGCAAGTAGAATGGGACTTTTTAGCCATCTATATGCCAAAGTTGCTGTATTTAGTAAGGTCCCGTTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGAGAGGTCTCTTTGCCTCCTGGGTTGCTTAGAAGAGTTGATGAACATCTGGTAGAATTTCTCTCTCACAAGTCAATGCATAAAGGTTTTCAAGATATTTCCGTCTCTAGATCAAGCAGCGGTGGTAGCATTGCTACAGATGAAGGGCTTTTTGAGCAACCTGAGCCACAAGCATCTAGTAAGGCTGTAATGGAAAAAATTCTTTGGAGGAGAAGTTCACATCTGCGTGATCAACAGCAGGCTTGGCAGTCATCTCTTGAAGGAAGAGAAATGCTGGAATTTCGGAAAAATCTCCCTGCTTACAAGGAGAAGGATGCATTATTGGCCACAATCTCACAGAATCAGGTTATTATTATTTCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAGTTCATTTTGGAATCAGAAATAGAATCACTCCGTGGGGCTGTTTGCAGCATCATATGTACACAGCCAAGACGAATATCTGCCATGTCTGTCTCTGAGAGAGTTGCTTCTGAAAGAGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGATACTCATCTTCTCTTTTGCACCACGGGTATCTTGTTGAGAAGATTGCTTGTTGATAGAAATTTGAAAGGCATAACTCACGTCATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAAGATCTCCTTCCTCGTCGACCAGAATTGAGGTTGATTCTAATGAGTGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTCACATTCCGGGATTCACACACCCTGTCCAAACTCATTTTCTGGAGGATATTCTAGAAATGACGGGTTACAGATTGACTCCATACAATCAAATAGATGACTATGGTCAAGAGAAGACATGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCCACTGTTCAGGATGCACTTATGGCAGCTGATTTTAAGGAGTACAGTTTTCAAACTCAGGAGTCCTTATCGTGTTGGAATCCAGACTGTCTTGGTTTTAATCTCATAGAATATCTTCTAGTCAGGATATGCGAGAGTGAAACACCTGGAGCTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTGAAGGAGAAACTTCAGTCTCATCCTTTATTAGGAGATCCGAGTCATGTCATGTTGTTGGTGTGCCATGGCTCAATGGCCAGTTCAGAGCAGAGGTTAATATTTACTGAACCTGACGAAGGAGTGAGGAAGGTAGTGCTTGCAACAAATATTGCCGAGACAAGTATCACGATAAATGATGTTGTGTATGTTCTGGACTGTGGAAAGGCAAAAGAAACATCGTATGATGCTTTAAATAACACTCCTTGTTTGCTTCCGTCTTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGCCGTGTTCAACCAGGAGAATGTTACCATCTATACCCTAGGTGTGTGTTTGGTTCTTTCTCTGAGTATCAGCTACCAGAAATTTTGAGAACACCTTTACAGTCCCTCTGCTTGCAAATAAAAAGCTTAAGGCTCGGAAGTATATCAGAGTTTCTATCTCGGGCTTTGCAATCACCAGAGCTACTAGCGGTTCAGAATGCTATTGAATATTTGAAGATGATTGGAGCATTTGATGAGAGTGAAAATCTTACTGTTTTAGGTCGTTATTTGACTATGCTCCCAATGGAGCCAAAACTGGGAAAGATGTTGATATTAGGTGCTATCTTCAATTGTTTGGATCCAATTTTGACCATTGTTGCTGGCCTCAGTGTGAGAGACCCTTTTCTAATGCCACTTGAGAAGAAGGATGCTGCAGAGGCTGCAAAATCTAAATTTTCACAAGATCACAGCGATCACCTTGCTATTATCCGGGCTTATGGGGGATGGAAAGAAGCTGAGAGGAACTTTGGTGGATATGACTTCTGTTGGAAGAACTTCCTTTCTGTACAATCGATGAAGGCTATTGATTCACTAAGGAAGGAGTTTTTTTCTTTGCTTAGAGATACTGGCTTGGTTGATGGGTACTCAGACACCTACAACGCTTGGAGTCTTGATGAACAACTTATACGTGCAGTTATTTGCTATGGCCTTTATCCTGGAGTTTGCTCCATTGTGCATAATGAGAAGTCATTTTCTCTCAAAACTATGGAGGATGGCCAGGTGCTCCTCTATTCGAACTCTGTCAATGCTCGAGAGTCGAGGATTCCATATCCATGGATAGTTTTTAATGAGAAGATTAAAGTGAACTCCATTTTCCTTCGAGATTCAACAGCCATCTCTGACTCAATGTTGCTTCTCTTTGGTGGAAGCATCTCAAAAGGTGATCATGAGGGACACCTGAAAATGTTGGGTGGTTTTTTGGAATTTTTTATGAAACCTGATGTGGCAGAGACATATCAGAAATTGAGAATGGAACTTGAAGAGCTTATACAGAAGAAGCTGCTAAATCCAAAGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCTGTACGCTTGCTTATTTCAGAAGACCAGTGTGAAGGTCGATTCGTTTTTGGCCGCCAGATCCTTCAGCAACCCTTCAAGACGTCAGCTCCTGCAGCAGCACCAACTGCTGTTTCAAGAATTGAAAGTGGACCTGGTGGTGACAATTCTAAGAGTCAGCTCCAGACTTTACTCACGAGAGCTGGATATGCTGCACCCGTCTATAAGACTAAGCAATTGAAGAACAATCAATTCCGAGCAACCGTGGAATTTAATGGACTGCAAATTATGGGACAACCTTGTACCAACAAAAAGAATGCAGAAAAGGATGCAGCAGCTGAGGCTCTTGAGTGGTTGATGGGTGGAAATCAGATAGGGCACGACTATGTCAACCAAATGTCTATGATGCTAAAAAGGAGCAAGAAGGATCATAATTAA 3519 43.02 MKDRSPSSNGAVYVPPHIRLRSVVTASYNSSAVSAVDCKLKAAPASLLDSGTTAFPCLHARSEELLPTGNSRFNSVQYDSAYDDGTPVESWTCNFECSHQSGFQTSVNIDLWKRKLALLLRDKEKQELISREKKDRQDFEEIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLLRRVDEHLVEFLSHKSMHKGFQDISVSRSSSGGSIATDEGLFEQPEPQASSKAVMEKILWRRSSHLRDQQQAWQSSLEGREMLEFRKNLPAYKEKDALLATISQNQVIIISGETGCGKTTQVPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFTHPVQTHFLEDILEMTGYRLTPYNQIDDYGQEKTWKMSKQAPRKRKTQIASTVQDALMAADFKEYSFQTQESLSCWNPDCLGFNLIEYLLVRICESETPGAILVFMTGWDDISSLKEKLQSHPLLGDPSHVMLLVCHGSMASSEQRLIFTEPDEGVRKVVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFGSFSEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPELLAVQNAIEYLKMIGAFDESENLTVLGRYLTMLPMEPKLGKMLILGAIFNCLDPILTIVAGLSVRDPFLMPLEKKDAAEAAKSKFSQDHSDHLAIIRAYGGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDEQLIRAVICYGLYPGVCSIVHNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDHEGHLKMLGGFLEFFMKPDVAETYQKLRMELEELIQKKLLNPKMDLHSHHELLSAVRLLISEDQCEGRFVFGRQILQQPFKTSAPAAAPTAVSRIESGPGGDNSKSQLQTLLTRAGYAAPVYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALEWLMGGNQIGHDYVNQMSMMLKRSKKDHN 1172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33353230 33364854 - CcPI632755_05g024980.1 Cco05g2498 180126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2498 1172 Pfam Double-stranded RNA binding motif 1085 1146 IPR014720 -
Cco05g2498 1172 Pfam Helicase conserved C-terminal domain 547 675 IPR001650 -
Cco05g2498 1172 PANTHER ATP-DEPENDENT RNA HELICASE 237 1079 - GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0005634(PANTHER)
Cco05g2498 1172 Gene3D - 1068 1150 - -
Cco05g2498 1172 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1083 1148 IPR014720 -
Cco05g2498 1172 FunFam DExH-box ATP-dependent RNA helicase DExH3 231 456 - -
Cco05g2498 1172 FunFam DExH-box ATP-dependent RNA helicase DExH3 538 694 - -
Cco05g2498 1172 Gene3D - 718 828 - -
Cco05g2498 1172 Gene3D - 232 456 IPR027417 -
Cco05g2498 1172 Pfam Helicase associated domain (HA2), ratchet-like 768 826 - -
Cco05g2498 1172 SMART helicmild6 570 676 IPR001650 -
Cco05g2498 1172 Pfam DEAD/DEAH box helicase 288 439 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cco05g2498 1172 SMART ultradead3 276 464 IPR014001 -
Cco05g2498 1172 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 894 976 IPR011709 -
Cco05g2498 1172 FunFam Putative ATP-dependent RNA helicase DHX36 718 822 - -
Cco05g2498 1172 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 716 IPR001650 -
Cco05g2498 1172 Pfam Helicase associated domain (HA2), winged-helix 739 766 IPR048333 -
Cco05g2498 1172 SUPERFAMILY dsRNA-binding domain-like 1079 1161 - -
Cco05g2498 1172 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 455 IPR014001 -
Cco05g2498 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 841 IPR027417 -
Cco05g2498 1172 SMART ha2_5 738 828 IPR007502 -
Cco05g2498 1172 CDD SF2_C_RHA 459 684 - -
Cco05g2498 1172 SMART DRBM_3 1084 1147 IPR014720 -
Cco05g2498 1172 Gene3D - 541 694 IPR027417 -
Cco05g2498 1172 FunFam DExH-box ATP-dependent RNA helicase DExH3 1062 1151 - -
Cco05g2498 1172 CDD DEXHc_RHA-like 294 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2498 K14442 - - csv:101208774 2148.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2498 Cco-Chr5:33353230 Cco10g1814 Cco-Chr10:31739836 2.80E-239 dispersed
Cco02g1753 Cco-Chr2:30273992 Cco05g2498 Cco-Chr5:33353230 1.50E-93 transposed
Cco03g0657 Cco-Chr3:6699449 Cco05g2498 Cco-Chr5:33353230 2.80E-82 transposed
Cco08g1900 Cco-Chr8:30002891 Cco05g2498 Cco-Chr5:33353230 2.40E-73 transposed
Cco09g0481 Cco-Chr9:4239594 Cco05g2498 Cco-Chr5:33353230 1.30E-93 transposed
Cco10g0505 Cco-Chr10:6056571 Cco05g2498 Cco-Chr5:33353230 1.90E-74 transposed
Cco10g1067 Cco-Chr10:22828217 Cco05g2498 Cco-Chr5:33353230 5.40E-47 transposed
Cco05g2498 Cco-Chr5:33353230 Cco06g1650 Cco-Chr6:27093372 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70