Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2508 ATGACTTCCTGCGGCGGCGAGGAGGTTGAAGTCAAGGGAGTGTTTACAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTATTGGCTTTTGGCGCTCAAAACGCCGTCGCCATCTTCTCTCCTAAGTCTGCACAAATTTTGACGACCCTTCCCGGTCACAACGCCTCTGTGAACTGCACTTATTGGCTTCCAAGTAACAAGTTTTCGTTTAGAGCCAAGCATTTGAAGTGTCATTATTTGCTATCTGGTGACTCTGATGGTGTCATTCATTTATGGGAGTTGTCTTTTCTGGACCAGAAGTGGAGAAATGTTTTGCAACTACCAAAATCACACAAGAAAGGCATCACATGTATTACTGCACATGTAATTTCTGAAACGGTGGCAATTGTTGCATCTGCTTCTTCAGATGGTTCGATTTGTGTTTGGGAGGTCGCTTTTCCGTCTACCAAAGAAGGTGATTGTACATTGTTGTTGCTGGACTCGCTCATGGTTGGTTCCAAATCTATGGTGGCACTTTCATTAGCAGAATTGCCTGGAAATGTCAGTCATATGGTCCTGGCTATGGGAGGCTTGGATAATAAGATTCATCTGTATTGTGGGAAGAGAACTGGAGAGTTTGTTAAGGCATGTGAGCTCAAAGCACATACAGATTGGATTAGAAGTCTGGACTTCTCTTTGCCTATGGGAAAAAATGGAGAAGCAAACAGCATTATGCTTGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAAATGGTTCTTCATGGTTCTTCAACTGACATAAATGGAGGATGCAAAAAAGAAGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTGCTGGACCATTAACTTACCAGGTATCATTAGAGTCACTTTTGATTGGACATGAGGATTGGGTATATTCAGTCCAATGGCAGCCGCCTTCAGCTTCAGAAACAGAAGGGGCTCTGTGCTATCAATCTGAAAGCATCCTATCTGCATCTATGGACAAGACAATGATGATTTGGAAGCCTGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACTGTTGGAGAGTTAAGTCATTGTGCTTTAGGGTTCTACGGTGGGCATTGGAGCCCTAATGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCTTTTCATCTCTGGAAAAATGTTGGTATCGGTTCAGATAACTGGAAACCTCAAAAGGTTCCCTCAGGACATTTTGCTGCTGTGATGGATATTTCATGGGCCAGATCTGGTGATTATATTATTTCAGTCAGCCATGACCAGACAACTCGGATTTTTGCTCCCTGGAAAAATGTCAATTCTCTCGAAGGAGGTTCTTGGCATGAAATTGCTCGACCTCAGGTTCATGGTCATGATATTAATTGTGTCACCATAATAAAAGGGAAGGGGAACCATCGTTTTGTCAGCGGAGCCGAAGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTTTGAAGACATTGAGTCATGCCACACAGGAGAATGTTGTGGCCACTGAAGATCACCTTGTGGATGTTCAGATCTTGGGTGCTAATATGTCAGCGCTTGGCCTTTCACAGAAACCTATTTATGTTCACTCTGCTGATAAGACACCAGACAGGAGTGGAAATGAAGGTATTGACACCCTTGAAACCATTCCCGATGCAGTTCCTGTCGTTCTTACTGAACCCCCCATTGAAGATCAATTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCTATTTTCTCTATGTTGTGATCACAAGGGGAAGCTTGTTGCGTCATCCTGTAAGGCACAAACGGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCATGGAAGGCAGTCGGTCGTTTGCAATCTCACAGCTTAACAATAACGCAAATGGAGTTCTCCCATGATGACAGTATGCTATTGGCAGTCTCAAGGGATCGCCAGTTTTCTGTTTTCAAAATCCAGAGAACAGGCTCGGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAACCCACATGGTCATGAGTTTGCAACAGGCTCTAGGGATAAGACTGTCAAGATATGGGCTGTGACAGCTGAATCTTCAGTTAAGCAGCTAACAACTCTCTCACAGTTCAAATCTAGTGTCACTGCTTTATCATGGGTCGGTCTTGATCCCAAGAGCAATGGACTCCTTGCAGTTGGAATGGAAAATGGCCTTCTTGAGTTTTGGAGTTTATCTATCAAAAGAACAGATAATGTCTGCTCAAATGTAGTTGCTTCAGTCGCTTTACGCCTCGATCCATTTGATTGTCATGTTTCCTCGGTCAACCGTTTGGCATGGAAGGAACCGGAGAAGAGTGGTGAAGAGTGCAGGAAGCTGCAACTTGCATCTTGTGGCACTGATCACTGTGTTAGAGTGTTTGAGGTAAATGTTTCTGTATGA 2520 43.49 MTSCGGEEVEVKGVFTGAGCNRIVNNVSWGACDLLAFGAQNAVAIFSPKSAQILTTLPGHNASVNCTYWLPSNKFSFRAKHLKCHYLLSGDSDGVIHLWELSFLDQKWRNVLQLPKSHKKGITCITAHVISETVAIVASASSDGSICVWEVAFPSTKEGDCTLLLLDSLMVGSKSMVALSLAELPGNVSHMVLAMGGLDNKIHLYCGKRTGEFVKACELKAHTDWIRSLDFSLPMGKNGEANSIMLVSSSQDRGIRIWKMVLHGSSTDINGGCKKEEISLTSYIQGPIFTAGPLTYQVSLESLLIGHEDWVYSVQWQPPSASETEGALCYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGIGSDNWKPQKVPSGHFAAVMDISWARSGDYIISVSHDQTTRIFAPWKNVNSLEGGSWHEIARPQVHGHDINCVTIIKGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATQENVVATEDHLVDVQILGANMSALGLSQKPIYVHSADKTPDRSGNEGIDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSHDDSMLLAVSRDRQFSVFKIQRTGSDEIHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWAVTAESSVKQLTTLSQFKSSVTALSWVGLDPKSNGLLAVGMENGLLEFWSLSIKRTDNVCSNVVASVALRLDPFDCHVSSVNRLAWKEPEKSGEECRKLQLASCGTDHCVRVFEVNVSV 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33444587 33450691 - CcPI632755_05g025080.1 Cco05g2508 180136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2508 839 Gene3D - 681 838 IPR015943 GO:0005515(InterPro)
Cco05g2508 839 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 689 720 - -
Cco05g2508 839 SUPERFAMILY WD40 repeat-like 192 727 IPR036322 GO:0005515(InterPro)
Cco05g2508 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 730 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 FunFam Elongator acetyltransferase complex subunit 2 367 679 - -
Cco05g2508 839 Gene3D - 290 399 IPR015943 GO:0005515(InterPro)
Cco05g2508 839 Gene3D - 400 549 IPR015943 GO:0005515(InterPro)
Cco05g2508 839 SUPERFAMILY WD40 repeat-like 19 317 IPR036322 GO:0005515(InterPro)
Cco05g2508 839 Gene3D - 24 289 IPR015943 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 212 259 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 727 770 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 50 100 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 682 721 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 586 630 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 358 397 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 297 348 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 456 497 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 405 444 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 107 150 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 633 672 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 SMART WD40_4 787 834 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 PRINTS G protein beta WD-40 repeat signature 137 151 IPR020472 -
Cco05g2508 839 PRINTS G protein beta WD-40 repeat signature 708 722 IPR020472 -
Cco05g2508 839 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Cco05g2508 839 Gene3D - 579 680 IPR015943 GO:0005515(InterPro)
Cco05g2508 839 Pfam WD domain, G-beta repeat 218 258 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 Pfam WD domain, G-beta repeat 116 149 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 Pfam WD domain, G-beta repeat 53 99 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 Pfam WD domain, G-beta repeat 406 443 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 Pfam WD domain, G-beta repeat 686 720 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 Pfam WD domain, G-beta repeat 635 671 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 Pfam WD domain, G-beta repeat 304 347 IPR001680 GO:0005515(InterPro)
Cco05g2508 839 PANTHER ELONGATOR COMPLEX PROTEIN 2 12 837 IPR037289 GO:0002098(InterPro)|GO:0033588(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2508 K11374 - - csv:101209018 1603.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1884 Cco-Chr1:31339930 Cco05g2508 Cco-Chr5:33444587 1.40E-131 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30