Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2510 ATGGCAAAATTTCCTTCAATTTCCCTGTTTTTTCTCCTCTGCAACTTATGCCTTTCCAGGGCTTCTTTGAATGAAGAGGGCAATGCCCTTTTATCATTCAAACAATCCATTACTGAAGACCCAGAGGGGTGTTTCAGCAACTGGAATTCTTCCGATGAAACCCCATGTGGTTGGAATGGAGTTACATGCAAGGATCTAAGAGTTGTTTCTCTTAGTATTCCTAAGAAGAAACTTAATGGGGTTATTCCTTCTTCTCTGGGGTTTCTGTCTGAGCTTCGTCATGTGAATCTCAGGAGTAATAAGCTCCATGGAACCTTGCCAATGGAGCTTTTTCAAGCTAATGGAATTCAAAGTTTGGTGCTTTACGGAAATTCCTTCACTGGGTCTCTTCCAAATGAGATTGGTAAGCTAAAAAACCTTCAAATCTTGGATTTGTCTCAGAATTTCTTTAATGGGTCCTTGCCTGTTTCCTTAATGCAATGCACAAGGTTGAGAGTTCTTGATCTTGGTCAGAACAATTTTTCTAATTCTCTGCCTACTGGGTTTGGTTCCAGTTTGAATTTCTTGGAAACATTGGATCTTTCTTACAATAAGTTTAATGGTTCAATTCCAATGGATATCGGTAATTTGTCTAGCTTACAAGGCACTGTTGATTTCTCACATAATTTGTTTTCTGGCTCTATCCCAGCCAGCCTGGGAAACCTTCCTGAAAAAGTTTATATTGATCTTACTTATAATAATTTGAGTGGTTCAATACCCCAAAATGGTGCTCTTATGAACAGAGGGCCAACTGCTTTTATTGGGAATCCTGGCCTTTGTGGGCCGCCGTTGAAGAACCCATGTTCTTCTGAAACTCCGGGCGCAAGTTCCCCGTCCTCGTTCCCATTTTTCCCAGACAATTATCCACCTGGGAGTTCTGAGGGTAATGGTAATAAGTATGACAAAGGAGGGCTGAGTAAGAGCACTTTGGTTGCAATAATCATCGGTGACATTGTCGGTATTTGCCTGATCGGGTTGCTGTTTTCATATTGCTATTCGAGGTTTTGCACTCATAGAAATGGGAAGAAGGCAGACCAATCTAATTATGGATTTGAGAAGGGTGGAAAAGGACGAAAAGATTGTCTCTGCTTTCAAAAGGGTGAATCCGAGAACGTTTCGGAGCATATCGAGCAGTTTGATTTGGTACCTCTGGATTCACAAGTGACGTTTGATCTCGACGAACTTCTCAAGGCATCGGCATTTGTTTTGGGAAAAAGTGGTATCGGAATTGTGTATAAAGTTGTGCTTGAAGATGGACTCACTTTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCTCAAAGATTAAAAGAATTCCAAACTGAAGTTGAAGCAATTGGGAAGTTGAGGCATCCGAATGTAGTTAGCCTTAGAGCATATTATTGGTCTGTTGATGAGAAACTGCTTATTTATGATTACATACCAAATGGGAACCTTGCATCTGCTATTCATGGAAAGCCCGGAACAACATCGTTTACACCGTTAGCGTGGTCTGTTCGGTTTAAAATCATGAAAGGCATTGCGAAAGGGTTGGTTTACTTGCACGAGTTTAGCCCGAAAAAGTATGTTCATGGTAATTTGAAAACAAACAACATACTTCTTGGACTCGACATGACACCGCATATTTCTAATTTTGGGCTTGCCCGCCTTGTTAACATTGCTGGAGGATCGCCAACTGTGCGATCGAGTCATATAGCAGAGGAAAAACCACAAGAGAAACAACTAAAGTCTGCCACCTCTGAAGCTAGTACATTCAGTTCTAGCACGAGTACTTACTACCAAGCCCCAGAAGCGTTCAAAGTCGTGAAGCCATCACAGAAATGGGACGTTTACTCGTATGGTGTGATATTACTTGAAATGATCACCGGAAGGTTGCCTATAGTTCAGGTGGGAGCGTCGGAAATGGATCTTGTTCAATGGATTCAACTCTGCATTGAGGAAAAGAAGCCGCTTTCAGATGTGATAGACCCGTCTTTGGCTCCGGACGACGATGCAGACGAGGAGATTATTGCGGTTTTGAAGATAGCATTAGCATGTGTTCAAAGTAGTCCAGAAAGAAGACCTGCAATGAGACATGTTTGTGATGGATTGAGCAGGTTGGGTGTCACTCCAAACTGA 2154 42.06 MAKFPSISLFFLLCNLCLSRASLNEEGNALLSFKQSITEDPEGCFSNWNSSDETPCGWNGVTCKDLRVVSLSIPKKKLNGVIPSSLGFLSELRHVNLRSNKLHGTLPMELFQANGIQSLVLYGNSFTGSLPNEIGKLKNLQILDLSQNFFNGSLPVSLMQCTRLRVLDLGQNNFSNSLPTGFGSSLNFLETLDLSYNKFNGSIPMDIGNLSSLQGTVDFSHNLFSGSIPASLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSETPGASSPSSFPFFPDNYPPGSSEGNGNKYDKGGLSKSTLVAIIIGDIVGICLIGLLFSYCYSRFCTHRNGKKADQSNYGFEKGGKGRKDCLCFQKGESENVSEHIEQFDLVPLDSQVTFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRLKEFQTEVEAIGKLRHPNVVSLRAYYWSVDEKLLIYDYIPNGNLASAIHGKPGTTSFTPLAWSVRFKIMKGIAKGLVYLHEFSPKKYVHGNLKTNNILLGLDMTPHISNFGLARLVNIAGGSPTVRSSHIAEEKPQEKQLKSATSEASTFSSSTSTYYQAPEAFKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGASEMDLVQWIQLCIEEKKPLSDVIDPSLAPDDDADEEIIAVLKIALACVQSSPERRPAMRHVCDGLSRLGVTPN 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33458521 33460751 - CcPI632755_05g025100.1 Cco05g2510 180138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2510 717 PANTHER OS05G0588300 PROTEIN 161 712 IPR050994 -
Cco05g2510 717 SUPERFAMILY Protein kinase-like (PK-like) 415 707 IPR011009 -
Cco05g2510 717 ProSiteProfiles Protein kinase domain profile. 410 712 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2510 717 Gene3D Transferase(Phosphotransferase) domain 1 486 715 - -
Cco05g2510 717 Gene3D Phosphorylase Kinase; domain 1 378 485 - -
Cco05g2510 717 SUPERFAMILY L domain-like 25 278 - -
Cco05g2510 717 MobiDBLite consensus disorder prediction 278 313 - -
Cco05g2510 717 FunFam Leucine-rich repeat receptor-like protein kinase 188 283 - -
Cco05g2510 717 FunFam Leucine-rich repeat protein kinase family protein 486 715 - -
Cco05g2510 717 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Cco05g2510 717 Pfam Protein kinase domain 416 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2510 717 CDD STKc_IRAK 416 712 - -
Cco05g2510 717 MobiDBLite consensus disorder prediction 574 594 - -
Cco05g2510 717 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Cco05g2510 717 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
Cco05g2510 717 Pfam Leucine Rich Repeat 217 235 IPR001611 GO:0005515(InterPro)
Cco05g2510 717 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Cco05g2510 717 Pfam Leucine Rich Repeat 163 184 IPR001611 GO:0005515(InterPro)
Cco05g2510 717 Gene3D Ribonuclease Inhibitor 180 282 IPR032675 -
Cco05g2510 717 Gene3D Ribonuclease Inhibitor 22 179 IPR032675 -
Cco05g2510 717 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 184 - -
Cco05g2510 717 FunFam Leucine-rich repeat receptor-like protein kinase 393 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0864 Cco-Chr2:10155281 Cco05g2510 Cco-Chr5:33458521 2.30E-77 dispersed
Cco05g1191 Cco-Chr5:11064289 Cco05g2510 Cco-Chr5:33458521 9.50E-71 dispersed
Cco05g2510 Cco-Chr5:33458521 Cco10g1936 Cco-Chr10:32933408 2.30E-63 dispersed
Cco04g0106 Cco-Chr4:2163067 Cco05g2510 Cco-Chr5:33458521 2.20E-76 transposed
Cco11g1430 Cco-Chr11:27072803 Cco05g2510 Cco-Chr5:33458521 9.50E-45 transposed
Cco01g0618 Cco-Chr1:6247603 Cco05g2510 Cco-Chr5:33458521 1.60E-213 wgd
Cco11g0759 Cco-Chr11:8496364 Cco05g2510 Cco-Chr5:33458521 2.10E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86875 PF00069 Pkinase 1.40E-28 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2510 - - - 0.0