Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2519 ATGGCTTCCAGAGAAGGGAGACGCCATCATCATCATCACCATCAGAATCTGGTGCCGCTTGCTGCTTTGATCAGTAAAGAGGTGAGGAGTGAGAGATTGGAGAAACCGACTGTAAGATATGGGAATGCAGCGCAGTCTAGAAAGGGGGAAGATTATTTTCTTATGAAAACTGATTGTCAGCGAGTTCCCGGGAACCCTTCATCCACTTTCTCTGTATTTGCTATATTTGATGGACACAATGGAAATGCTGCAGCAATTTACACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCATTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCTGGAACTACAGCTACGTTTGTGATCATTGATGGATGGACGGTGACAGTAGCATCAGTTGGAGATTCCCGTTGCATTTTGGATACTCAAGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATCGGCTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGCGGTGGGGAAATTGGAAGATTAAGCATCGTTGGTGGTGCTGAGATCGGCCCACTCCGTTGTTGGCCCGGAGGCTTATGCCTTTCTCGATCCATTGGAGATATGGATGTTGGAGAGTTTATAGTTCCAATTCCATTCGTGAAACAAGTAAAGTTATCAAAGGCAGGCGGGAGGCTTATAATTGCTTCTGATGGCATCTGGGATGCTTTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCAGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTAAGAACAAGAGGGTTGAAAGATGATACAACCTGCATAGTTGTAGACATAATTCCTCCTGATAATTCAGCACAGTCTTCCCCTCTTCCAAAGAAACAAAGCGTACTGAAATCTCTATTATTCAGGAAAAAGTCTCACAGTTCTAATAAGCTATCAAAGAGGCTTTCAGCTATCGGTTTCGTGGAAGAATTATTCGAAGACGGCTCCGCCATGCTGGCGGAAAGGCTTGGAACAGTAGAGTTGAGTGGATCTGGACATGGCACGCCCAGCCTGTTCACTTGTGCTGTATGTCAAGTAGATCTTGCTCCTAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCTTTCCTTTGTGCCGATTGTCGAAACAAGAAGGACGCCATGGAAGGAAAACGTCCCAGCGGGGTAAGAGTGGCGTAG 1302 47.47 MASREGRRHHHHHHQNLVPLAALISKEVRSERLEKPTVRYGNAAQSRKGEDYFLMKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIYTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSKAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPLPKKQSVLKSLLFRKKSHSSNKLSKRLSAIGFVEELFEDGSAMLAERLGTVELSGSGHGTPSLFTCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33507876 33510580 + CcPI632755_05g025190.1 Cco05g2519 180147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2519 433 PANTHER PROTEIN PHOSPHATASE 40 300 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco05g2519 433 FunFam probable protein phosphatase 2C 5 39 306 - -
Cco05g2519 433 CDD PP2Cc 48 301 IPR001932 -
Cco05g2519 433 Gene3D - 40 308 IPR036457 -
Cco05g2519 433 SUPERFAMILY PP2C-like 46 301 IPR036457 -
Cco05g2519 433 Pfam Protein phosphatase 2C 65 286 IPR001932 -
Cco05g2519 433 ProSiteProfiles PPM-type phosphatase domain profile. 32 301 IPR001932 -
Cco05g2519 433 SMART PP2C_SIG_2 34 301 IPR001932 -
Cco05g2519 433 SMART PP2C_4 29 299 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1820 Cco-Chr3:32850125 Cco05g2519 Cco-Chr5:33507876 8.30E-173 dispersed
Cco05g2241 Cco-Chr5:31152031 Cco05g2519 Cco-Chr5:33507876 6.10E-144 dispersed
Cco05g2519 Cco-Chr5:33507876 Cco05g0657 Cco-Chr5:5346639 8.10E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2519 - - - 0.0