Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2524 ATGTTGCAGGCTTCCATTATTCCGATTCAATCGCCGGCTCCGATGTTCCATAACAAAACTACAGGACTCCCAATCCCTCCATCAGTTGTCTTCCCCATCAACCGGCCTTCGACATCTTTACCCCTACGATCACCCCCACTAACGAGAAGCTCTATCTCTTCTTCTTTTGATCCCAAATCCGGCAAAGGGATGGACGGTTTCCTAGATGTTGAGCTCAAAGTTCGTGATTATGAGCTGGATCAATTCGGAGTTGTGAACAATGCTGTTTATGCAAGTTATTGCCAACATGGTCGTCATGAACTACTGGAAAGTATAGGCCTCAGTCCTGACGCAGTTGCTCGCGATGGAGATGCATTAGCTTTATCAGAATTGTCTTTGAAGTTCCTTGCACCACTTAGAACTGGAGACAAATTTGTTGTTAAGGTGAGGATCTCAGGCACATCAGCTGCTCGCTTCTACATTGATCATTTCATTTTCAAGCTTCCAAATATGGAGCCAATCTTGGAGGCAAAGGGTACAGCAGTTTGGCTTAATAAAAGTTATCGTCCGAGTTACAAGATGGATGGGTTCCAAGAATTTGAGCTCAAAGTTCGTGATTATGAGCTGGATCAGTTCGGTGTGGTCAACAATGCTGTTTATGCAGATTATTGCTACCATGGTCGCCACGAACTGCTAGAAAGAATTGGAGTGAGTCGTGATGCAATTACTAGAAGAGGGGATTCCTTAGCGCTATCAGAGATGTCTTTGAATTTCCTTTCACCACTTAGAGGTGTCGGAAATCTCAAGGGCTCGCATCTACGTTCAGCACTTAATTTTCAAGCTTCCAAATATGGAGTAGTGAAACGTATATTGTTCGATGGAACGTCTTTGCTAAACGAGCTACAGCTTCAATGGCGTAATCCACTTTACGGGCTTTTACTCTTCCTCGTCCCTTTCCCTTTTCGCGGAATGGCTGAAACAAAATCAAACCCAGCAATGGAGAAGAGGGTAATGGTGGGCATAGATGAGAGTGAGTGTAGCTACTATGCCCTAATCTGGGTGCTCGAAAATCTTAAACAATCCATAGCCGACTCGCCCCTTTTCCTCTTCACGGCTCTCCCTCCGCCCTCCAGTTACACCTCCGGTGCTGGCGCATCTCTTGGCCTCGCACCCTCCTATTTCCCTGTTGCATCCAATACGGAGTTGGTTTATACGCTTCAAGAGAATGATAAGAAAGTTAGATGCGGTCTCCTTGAGAAAGCAAAGGATATATGTGCTGAAAGAGGGGTGGCTGCTATATCCATCACAGAAGATGGGGATCCTGGAACAACAATATGTGATACGGTTGAAAAGCTCAATATAAATTTGCTTGTTTTAGGTGATCGTGTCCTTGGGAGAATTAAGAGAGCTCTTATAGGGAAAACCGTAGAAATGTCAGGGCTTTAA 1425 44.91 MLQASIIPIQSPAPMFHNKTTGLPIPPSVVFPINRPSTSLPLRSPPLTRSSISSSFDPKSGKGMDGFLDVELKVRDYELDQFGVVNNAVYASYCQHGRHELLESIGLSPDAVARDGDALALSELSLKFLAPLRTGDKFVVKVRISGTSAARFYIDHFIFKLPNMEPILEAKGTAVWLNKSYRPSYKMDGFQEFELKVRDYELDQFGVVNNAVYADYCYHGRHELLERIGVSRDAITRRGDSLALSEMSLNFLSPLRGVGNLKGSHLRSALNFQASKYGVVKRILFDGTSLLNELQLQWRNPLYGLLLFLVPFPFRGMAETKSNPAMEKRVMVGIDESECSYYALIWVLENLKQSIADSPLFLFTALPPPSSYTSGAGASLGLAPSYFPVASNTELVYTLQENDKKVRCGLLEKAKDICAERGVAAISITEDGDPGTTICDTVEKLNINLLVLGDRVLGRIKRALIGKTVEMSGL 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33555588 33565276 + CcPI632755_05g025240.1 Cco05g2524 180152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2524 474 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 187 256 IPR029069 -
Cco05g2524 474 Gene3D Hotdog Thioesterase 190 262 - -
Cco05g2524 474 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 328 470 - -
Cco05g2524 474 Pfam Thioesterase-like superfamily 197 256 - -
Cco05g2524 474 Pfam Thioesterase-like superfamily 74 179 - -
Cco05g2524 474 Gene3D HUPs 323 468 IPR014729 -
Cco05g2524 474 CDD USP_Like 329 470 - -
Cco05g2524 474 FunFam acyl-acyl carrier protein thioesterase ATL3, chloroplastic 58 186 - -
Cco05g2524 474 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 64 183 IPR029069 -
Cco05g2524 474 Gene3D Hotdog Thioesterase 54 189 - -
Cco05g2524 474 CDD 4HBT 192 256 - -
Cco05g2524 474 MobiDBLite consensus disorder prediction 41 60 - -
Cco05g2524 474 CDD 4HBT 70 178 - -
Cco05g2524 474 Pfam Universal stress protein family 328 469 IPR006016 -
Cco05g2524 474 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 27 183 IPR050563 GO:0009507(PANTHER)|GO:0016297(PANTHER)
Cco05g2524 474 MobiDBLite consensus disorder prediction 41 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2524 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2524 Cco-Chr5:33555588 Cco08g1330 Cco-Chr8:25188489 7.30E-13 dispersed
Cco05g2524 Cco-Chr5:33555588 Cco05g0728 Cco-Chr5:5978354 5.00E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g324 . . . . . . . . . Cmo18g01020 . . . Car18g00933 . . . Bhi07g01308 . . . . . . Cla05g02288 Cam05g2461 Cec05g2481 Cco05g2524 Clacu05g2456 Cmu05g2317 Cre05g2435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007321 0 6 0 0 0 1 1 1 1 2 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 0 1 1 0 3 36