Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2541 ATGTCGTACTCTCCTAATCAGAGATTTGTTAGCAGTAGTAGAAAGTCGAATCTGCTGCAAAATAATTTCTCTGCAGATCCCAAAATAAGGAGAAAACTTCGTATAATCTGTTACGATCCCGATGCAACTGATTCATCTTCAAGCGAAGGTGAAGGAGAAATATATGCAAGAAAGTTTAACCGAATCGTACACGAAATCCACCTGCCTCCCCTGAAAAAATCTCTCGAATCCGAGAGTTCTCAGAACAGCAACAATGAAAACAAAAGCTCCAAGTTTAAGCAATCAAAGGCTCTGTTTAAAAACCCTTCCTCTCGGAGACAATCGTCTTCCAAATACAGAGGTGTCAGACAGAGATCTTGGGGGAAATGGGCGGCTGAGATTCGAGATCCTTTTAAAAGAAGCCGTGTTTGGCTTGGTACTTACGATACTGCAGAAGAAGCTTCTCAAGCTTATGAATCAAGGAGATTACAGTTTGAAGCTATGGCGGCGGAAATGGCTGTTGAAGAAGAAGGCAAGAGGACTGGTTCCTCATCTTCCCCTGTTTTTTCGGAAAGTACGGCGGAAACCACCGTGTCTCATACATCGCCGTCGTCGGTTCTTGAATGGGACGATTCAACTTTGCGAAGCCATGATTTGAAAGAGGGATCAGATTCAATCAAAGAAGAAACAGACAGTAATATGAACTATCTTCAAGAAGGGGATCAGGGGAATCCGTTTATGGAGGAAATTAACATGGGGATTGATTTTGATTCCATTCTGGCAGATGGAATCGGAATGTTCTTGGAGGATTTTGCAAGTTTGGAGAATACCCACGTTTTTGGGCTTGCTGATGATGAACCCAGTGGCCTTCCGAATTGGGATTTTGGGGATTTTGGGAATGATGATATTTCTTGTTGGCTTTGA 903 42.75 MSYSPNQRFVSSSRKSNLLQNNFSADPKIRRKLRIICYDPDATDSSSSEGEGEIYARKFNRIVHEIHLPPLKKSLESESSQNSNNENKSSKFKQSKALFKNPSSRRQSSSKYRGVRQRSWGKWAAEIRDPFKRSRVWLGTYDTAEEASQAYESRRLQFEAMAAEMAVEEEGKRTGSSSSPVFSESTAETTVSHTSPSSVLEWDDSTLRSHDLKEGSDSIKEETDSNMNYLQEGDQGNPFMEEINMGIDFDSILADGIGMFLEDFASLENTHVFGLADDEPSGLPNWDFGDFGNDDISCWL 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33686313 33687215 - CcPI632755_05g025410.1 Cco05g2541 180169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2541 300 CDD AP2 110 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2541 300 PIRSF PTI6 5 295 IPR017392 GO:0003700(InterPro)
Cco05g2541 300 Pfam AP2 domain 110 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2541 300 SMART rav1_2 111 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2541 300 MobiDBLite consensus disorder prediction 172 200 - -
Cco05g2541 300 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2541 300 Gene3D AP2/ERF domain 110 166 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2541 300 SUPERFAMILY DNA-binding domain 110 158 IPR016177 GO:0003677(InterPro)
Cco05g2541 300 MobiDBLite consensus disorder prediction 169 200 - -
Cco05g2541 300 MobiDBLite consensus disorder prediction 1 24 - -
Cco05g2541 300 MobiDBLite consensus disorder prediction 74 113 - -
Cco05g2541 300 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 204 IPR050913 -
Cco05g2541 300 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2541 300 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2541 300 MobiDBLite consensus disorder prediction 72 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2541 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0405 Cco-Chr5:3336249 Cco05g2541 Cco-Chr5:33686313 3.90E-27 dispersed
Cco05g2541 Cco-Chr5:33686313 Cco07g1563 Cco-Chr7:29654225 3.30E-19 dispersed
Cco01g1706 Cco-Chr1:29783245 Cco05g2541 Cco-Chr5:33686313 1.00E-24 wgd
Cco05g2541 Cco-Chr5:33686313 Cco08g0668 Cco-Chr8:17827940 2.40E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g303 . Blo16g01062 Bda01g02077 Bda11g01147 Bpe13g01346 Bpe10g00938 . Bma15g00086 Cmo04g01583 Cmo18g01035 . Cma18g01025 Car04g01564 Car18g00945 Sed11g1612 . . Bhi07g01328 Tan04g0862 Cmetu03g2262 Lac13g0490 Hepe01g1195 . . Cla05g02303 Cam05g2476 Cec05g2499 Cco05g2541 Clacu05g2471 Cmu05g2333 Cre05g2450 . . Cone13ag0288 . Lsi04g00259 Csa05g02608 Chy10g01143 Cme10g00264 . . . Bda11g01147 . Bpe02g02269 Bma01g00167 Bma06g00759 . . Cmo15g00939 . . . Car15g00843 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001455 2 2 1 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 3 5 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59377 PF00847 AP2 1.50E-12 CL0081 Cco TF