Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2545 ATGAAGATTTTTGTCAAGACTCTCAAGGGCTCGCACTTCGAAATCGAAGTTCAGCCTGCAGATACGGTTGCTGATGTGAAGAAAAACATAGAAACTGTTCAGGGTGCTGATGTTTACCCTGCTGCACAGCAGATGCTTATCCATCAAGGGAAAGTCCTTAAAGATAGCTCAACACTGGAGGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATAATGTTAACAAAGAATAAAAGTACATCGGGTGGGACATCTTCTACCACACAAGCTGCGCCAGTATCGAAGGCACCACAGAGCACTGCCCCTGCGCATGCTGCCACTCCAGTGTCAACTTCTGAAGTTCCTCTACCAACTTCAGCACCGCCTGCTAATGTTACTGATTCTTCTCCTCCCGCTCCCGCACCGGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCCGCTCCCGCTCCCGCTCCCGCTGCAGCCCCAACAACCACTGTTTTGCCAGAATCGGATGTCTACAGCCAAGCAGCCTCTAACCTGGTTGCTGGTAGTAACTTGGAGGAGACTATCCAACAGATTCTTGACATGGGCGAAGGCGTTTGGGATAGGGACACTGTTGTTCGAGCTCTTCATGCTGCTTACAATAATCCGGAAAGGGCTGTTGATTACCTTTATTCTGGAATACCTGAACAAGTTGAAGCCCCACCTGCTCGAGTTCCGTCAACTGTGCAAGCAACCAACCCTTCTGCTCAACCTGCACAGCCTGCCCAACCTGCATCTGTGCCATCAACTGGCCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGTGTGCCTAACATAGCTTCTGGAGCTGCTGGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTTCAAGCTTTGCGAGCAATGGTGCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTGATTAGGCTTATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCCCTTGAAGGAGAAGGGAATATACTTGGGCAGCTTGCTGAGGCTATGCCACAGGCTATAACTGTAACCCCAGAGGAGCGGGAAGCCATTCAACGGCTTGAGGATATGGGTTTCGACAGAGGTCTAGTCGTGGAGGTTTTCTTCGCGTGCAACAAAAACGAAGAAATGGCTGCCAATTACCTTTTAGATCATATTCACGAATTTGAGGGTAATCAGAATTAG 1254 48.64 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLEENKVAENSFIVIMLTKNKSTSGGTSSTTQAAPVSKAPQSTAPAHAATPVSTSEVPLPTSAPPANVTDSSPPAPAPAPAPAPAPAPAPAPAPAPAPAPAAAPTTTVLPESDVYSQAASNLVAGSNLEETIQQILDMGEGVWDRDTVVRALHAAYNNPERAVDYLYSGIPEQVEAPPARVPSTVQATNPSAQPAQPAQPASVPSTGPNANPLDLFPQGVPNIASGAAGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNILGQLAEAMPQAITVTPEEREAIQRLEDMGFDRGLVVEVFFACNKNEEMAANYLLDHIHEFEGNQN 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33742728 33750558 + CcPI632755_05g025450.1 Cco05g2545 180173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2545 417 CDD Ubl_Rad23 1 74 - -
Cco05g2545 417 MobiDBLite consensus disorder prediction 124 160 - -
Cco05g2545 417 Pfam XPC-binding domain 290 345 IPR015360 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cco05g2545 417 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 183 226 IPR015940 -
Cco05g2545 417 FunFam UV excision repair protein RAD23 B 281 346 - -
Cco05g2545 417 FunFam UV excision repair protein RAD23 homolog 178 228 - -
Cco05g2545 417 FunFam UV excision repair protein RAD23 1 80 - -
Cco05g2545 417 Gene3D - 362 409 - -
Cco05g2545 417 Gene3D - 178 228 - -
Cco05g2545 417 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 367 408 IPR015940 -
Cco05g2545 417 MobiDBLite consensus disorder prediction 239 269 - -
Cco05g2545 417 SMART CBM 288 331 IPR006636 -
Cco05g2545 417 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Cco05g2545 417 Gene3D - 1 80 - -
Cco05g2545 417 MobiDBLite consensus disorder prediction 236 275 - -
Cco05g2545 417 FunFam UV excision repair protein RAD23 homolog 361 409 - -
Cco05g2545 417 MobiDBLite consensus disorder prediction 78 162 - -
Cco05g2545 417 NCBIfam UV excision repair protein Rad23 1 413 IPR004806 GO:0006289(InterPro)
Cco05g2545 417 Gene3D - 280 345 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cco05g2545 417 SMART uba_6 370 407 IPR015940 -
Cco05g2545 417 SMART uba_6 185 225 IPR015940 -
Cco05g2545 417 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515(InterPro)
Cco05g2545 417 MobiDBLite consensus disorder prediction 78 123 - -
Cco05g2545 417 SUPERFAMILY UBA-like 350 412 IPR009060 GO:0005515(InterPro)
Cco05g2545 417 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 406 - GO:0005654(PANTHER)|GO:0005829(PANTHER)|GO:0031593(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0070628(PANTHER)
Cco05g2545 417 SUPERFAMILY XPC-binding domain 286 351 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cco05g2545 417 SMART ubq_7 1 75 IPR000626 GO:0005515(InterPro)
Cco05g2545 417 Pfam UBA/TS-N domain 186 223 IPR015940 -
Cco05g2545 417 Pfam UBA/TS-N domain 370 405 IPR015940 -
Cco05g2545 417 SUPERFAMILY UBA-like 182 231 IPR009060 GO:0005515(InterPro)
Cco05g2545 417 PRINTS DNA repair protein Rad23 signature 316 338 IPR004806 GO:0006289(InterPro)
Cco05g2545 417 PRINTS DNA repair protein Rad23 signature 381 395 IPR004806 GO:0006289(InterPro)
Cco05g2545 417 PRINTS DNA repair protein Rad23 signature 364 380 IPR004806 GO:0006289(InterPro)
Cco05g2545 417 PRINTS DNA repair protein Rad23 signature 396 411 IPR004806 GO:0006289(InterPro)
Cco05g2545 417 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2545 K10839 - - csv:101220491 678.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2545 Cco-Chr5:33742728 Cco10g1455 Cco-Chr10:27674206 7.10E-105 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41