Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2549 ATGGCTAACGATACTGCTCATCGGAAGCACCGCCGATCTGCTTCCGATGAAGACGATGAGAAGTCTTCTAAGCGTCACAAACACCGTCACCATCGCCGCCGCCACCGACATCGTCACAGCAGCAACAAGAACGAAGAAGAAAGCATCCGTGACCAGGAGGATTGTGTTCCTCCTGTTGCTAATCGTAGATCTCGGCCGGAAGATGACGTCGAGGAAGGCGAAATTCTCGAAGAGGAAGAGTCTGGCGTTCGCGAGAACGAGAGCTCGATGAAGGAGGTGGATGTGGAATTTGGGAAATTTGAAGCTGATGAAATTTCCGGTAGAATTGACCAGCCCGCTATGGAGTGTCATGAGGTGGATGAATCATCTAAGGCTAATTTAATTGTGAAAGAGGGGGCAGGAAACAGTGCTCAAGATTGGAAGACCTCGAAAGTGGACAGTAAGTTCTATAATTTAGATAAGGAAAAAGGTGGCTATTATGCAAAAAAAGATACAGACAAGGAAAACATGATGCTCTATCAAACTGACTCTGGCTGTAAGCATGGCAACGATGGTAGCTTTTCCACGGGTGAAGTGGCTGGAATTAAATACAATAATCTTGAACGTTGTCGAGAGGGTCACAGTAAAGGGGATTTTGGTCACGAATCTCTGAAGTTAGATGAGAGGCAGCACAAACGAATGTTATCTCCTTCTAAAGGGGGTATTAAGAAAATAAGCAACAATGGCAATGGAAAGGTGGCGACAGATGGAAGCACCTTGGGGAATGGGAAAAGGCCACAGTTAGAAAGGACTGTAGACAAGTCTCAGGATTTAACGCCATCAACATCTCAAGATCGATTCATTGACGCATCAGATTGTAGGAGTAGATCGAGGTCAAATTGTCATTCTAGGGGGCAATCTCAGTCTCGTGAAACAGTAGAAGAGGAGGCAGAGTCAAAGAGTAGACATGATCATGGTTGGGATCACCCAATATTTGATGATAAAGGTAAAATTCACACTGACTTGGATGATGATTACACTGAATGTGCTAGGGGAGAGGGAAGGCATCGAAGCAGGGATACGAAGGACAGAGGGAGAAGTAAGATGGAGGTGGATAGGGACTGGTCCAAGGAAAATGAAATGGGAAAAAACAAAGATAAAGATAGGGGGATAGATGAGCAAAAGTATGATGACAGAGAGAGAGGTAGGAGTAAAGATAGAAGAAAGGAGATGGAACGAAACAGGAGTAGGGAGAGAGAGACGGATAGGGATAGGAGAAGGGAAAGGGATGTGGAAAGAGATAGGAGAGTGAAGGAAAGAGGTAGGAGTAGGGAAAGAGAGGTGCAAAGAGATAGAAGAGTGGAGAGGGAAAGAGGTTGGAGTAGGGAGAGAGAGGTAGAAAGGGATAGAAGAATGGAGAAGGAGAGAGGTTGGAGCAAGGAAAGAGAGGTGGACAGGGGTAGAAGAGCAGAAAAGGAAAGATGTAGGAGCACTGATAGAGAGGGTAATAGGGATAGAAGAAGAGAAAGGGAAAAAGATAGGAGCAAGGAAAAGGAAGTAGATTGGGATGGGAGAAGGGATAGGGACAGGGATCGAAATGATGATAAGGCTGAATATAGTGATAGAAATAGAGACAAGGAAAGGGTGAGAGAGATGCAAAAGGACCGGTATAGGGACAAAGAATTTGATAGGGATAGACAAGATGATAGAAACAAGAATAAATCCAGTGACATTTTAACTAGTAAGGACAAGTATGGGAATCTTGAACATGGCTATGTTAAAGGTTCTAAGCAGTCTAGGCATTATGATAATGAATTTGGTCTGGATGGGGGAAGAACTAATGCTGTCGAAAAGCAGGGTAGTTTTAAGAGAAATAATCGTGAAGAAGGTGAAGACAAGCTAATGAGTGATCACGATGGGGAGGAAGAGGATGGAGACAGCATGTCATTTCAATTAGCCGATGAAGAAGAGGAGGATCTTAACAGAATCAAGGAGGAGAGTAGAAGACGGAGGCAAGCAATCTTAGAAAAATACAAATGCCAGCAGTTAGAGAAACAAGTAGAGCCTTCTTTGAAGGAATCTGAGAAAGGTAAGGATTCTGCAAATGATTCTTCTCAATCAGAAGCTGCTGCTCATGCTATTCCAGAATTGGTTGATGGGGTGGTGGATGATAGTGTTACTGACTCATCTTTTGCTGTGGAGAAATCCCCACAACAAAATGGAGTAAATGCGACAGATAAAACTGCTGGTACTAAAGGACTTGGAGAGGGTACTCCAAAGGCTGAGGGGTCAGATGGATTATTCTGTGATGACATTTTTGGAGAAACACCTGCTGCAGTTCGTAAAATGGGCAAAGGTGATGGTTTGCAGATAGAGAGGAGTGGTCTTCATGACAATTGGGACGATGCGGATGGATATTATAACTACCGATTTGGTGAAGTGCTTGATGGTCGGTATGAAATTGCTGCTGCACATGGCAAAGGTGTTTTTTCAACCGTAGTCCGTGCAAAGGATCTCAAAGCTGGTCATGCCGAACCAGAAGAAGTGGCAATCAAAATTTTGCGTAGTAATGAAACAATGTACAAGGCTGGTCTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTGAGGGCATACGCTAAGCAGCTTTTTATTGCCCTGAAGCATTTGAGAAACTGTGGTGTTCTCCACTGTGATATAAAGCCAGATAATATGCTGGTTAATGAGGGAAAAAATGTGCTGAAGCTTTGTGATTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAATCACCCCATACCTTGTTAGTCGGTTTTATCGTGCACCTGAAATAATTTTAGGGCTGTCATATGACCATCCAATGGATATCTGGTCTGTGGGTTGCTGTTTGTACGAGCTCTCTACAGGAAAAGTTCTTTTTCCAGGTCCTTCTAATAATGACATGCTGCGCCTACACATGGAATTAAAGGGACCTTTTCCGAAGAAGATGCTTCGTAAGGGAGCATTTACTGACCAACATTTTGACCAGGACCTGAACTTCCATGCTTCTGAGGAGGATCCTGTAACCAAAAAGACCATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGATCAATTATTAGGGGATCTCCTGGTGAAGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCTAGACAAAATTTTTGTGTTGGATCCAGAAAAAAGGATGACAGTATCACAGGCATTGAATCATCCATTCATCACTGGCAATCTTCTTTATGATGACCTAAGCTTCTGGCACAATTATGGGATGATTGAATTCAGAAGGGGTCATATTGGTCAGGAGTGGCGGGTTCTTTCAGTCGAATGTACTGTTTCTATTGATGTCTGCTTCTGCTCTGAGAGAACCTTCCAGTGCTTAAGTGATTTAGAGGCACTCAGGAGAAGATGCATGTGTATTTATGACCATGATTTATTTTATCATGCAACCTACCACCACTATGGGGTGGTTGGGAACAAGGATATGATATCGTTTATGGAGGCACTTGCATTGGAGAGGTTAACCGCTGTGGCACCATGTGAAGTAGTGTTGCAGGCGAACTGCATATCATCCCCATTCTCTTGTAAGTATTTCGAATTCCATACACAGCTATTGCAAGAGATGCATGAATACGGAAGGATGATCGGCATTGAGCAATCAACCCAAAAGCCTTCTGCAATTCATTCTAAGCGTTGGGTTGTGAGGGATTTATCAGTTATGAACACGATCGATGAGGTTCTCTGTTTTGTTGCTGGAGAGTCTTTCTATTGGGTGCTCACAATAATCATTTCTCATGGCCTACTTGTTCGGTGGCTGGTTATTCCTTTCATCAAGAATTTTCTTATCTTTATTTGTAATGGCAGCTTGAAGCGTACGCCTAAGAGATTGTTTTTTGGTGCTGTCCATCTAGCAGTGCCTGTATGTTTTGTTCTGTTGCCCCAAGCTGTACGCTTAACAACAATTTCATCTCGAAGGAGATTTGTGCAATGTCGGACGGGCTTGGGAAGTTGGATGGATAAATTAGTTCCGAATTGTTCTTTATACCAATGTAAATCAGAAACTGGGCTGAATCATTTCATAGGCTATGCCTATGAAATGGCTATGAAGAAGGCAATATCCGTGAAATTCATTGTTTCCTCTGAGAAAGTCGTTGAGAACACTATGGTAACTTGCCTGCATACTTGGATTTGTGTTTACAGCAAGACTGCCTCTTTCCCTCCGAGAAAGGAGAAGTTGTCGGAGTTTCCATACCAAAGATTTCTCAGGAACATGGGAAAGAAGCTGGATGCACTGCTGGGAAGAAGCTTCAAGACCACAAGGTTCAAAGCTCTTGTGAATCTGGCCATATCTCGCCTCGCTGTTCTTGCAAACCAGCGCCAAGTCAGATCTTCCCAGGCTCGTTCTGACGTAGTTCAGTTGCTGCAGCTTGGCCACCAAGAGAGAGCCCTCTTTCGGGTGGAGCAAGTGATTAAGGACCAGAAACTGCTGGATGCGTATGCGATAATAGAGAGTTATTGTGAGGTTGTACTGGAAAGAATCAAGCTACTTGAACATGAGAGAGAATGTCCAGAAGAACTTAAGGAGGCAATTTCAGGTTTGATTTTTGCATCTTCTAGATGTGGGGATTTCCCAGAGCTTATAGAAATTCGTTCAGTAATTACCAGTCGTTTTGGGAAGGAGTTTACTGCTCGTGCTATTGAGTTACGCAACAATTGTGCTGTTGGTCCAATGATAGTACAGAAGCTGTCAGCTAGGCCACCAAGCTTGGAGATCAAATTGAAGTTACTAAAACAAATTGCTTCTGAACATGGCATTACTTTGAAAGATTTGGAAGCTTATGAAGTTTCAACTGAGACGCAGGAGAAAGTTGTGGCAGAAGAGAAGAAGGATCAACCACAGCAGGAAACCAAAGTGGAAGGTGTTTTTCAGATTTTACCTGAAGAGATAGAGAAAGACAATCGGTATGCTGATTCGATGAGAGGAAGAAGGAAGTACAAAGATGTGGCAGACGCTGCTCAGGCAGCATTCGAGTCAGCAGCTTATGCAGCAGCTGCAGCAAGAGCTGCTGTGGAACTCTCTCAGTCTAAATCACTTGATCACGATGACCCGAGTAGTCTGAGTCCAAAACCAAGAAAATACACTGAAACTCTTGAATCGAAGAACACTGAGATAGAATTGGAATCAGAAAACAAGGAAACACACAGTGGAAGTAGGTCTATAGGAGTGGAGGAGAGTGAAAATGGAACAGAATCGAAGCAGCCAGTGTCTTCTTCTAGTTCGGAAGCCGGGAATGCTAGTTTAAAGGAAAATGAGATTCCAATAGAAGCAATAATTGATCTTCTGGAGAAGGATTTGGTTTTTGACGAGAGTGATATTGATGCTGGGAATGGAGAAAGCAGCAGTTCAACTCTTGAGGAGAGGAATTTGAGCTTCGAGTGTCGTGAGAAGATGGAATCAGAGTCTACAGAGATCACAGCAAACAATGAGGAATCTGATAACAAAAATACTGCACAAAATTTAAGCATAGAGAATAAGGCTGTTATAAGGACAATAGATGTCCGTGGGCACTGA 5730 42.93 MANDTAHRKHRRSASDEDDEKSSKRHKHRHHRRRHRHRHSSNKNEEESIRDQEDCVPPVANRRSRPEDDVEEGEILEEEESGVRENESSMKEVDVEFGKFEADEISGRIDQPAMECHEVDESSKANLIVKEGAGNSAQDWKTSKVDSKFYNLDKEKGGYYAKKDTDKENMMLYQTDSGCKHGNDGSFSTGEVAGIKYNNLERCREGHSKGDFGHESLKLDERQHKRMLSPSKGGIKKISNNGNGKVATDGSTLGNGKRPQLERTVDKSQDLTPSTSQDRFIDASDCRSRSRSNCHSRGQSQSRETVEEEAESKSRHDHGWDHPIFDDKGKIHTDLDDDYTECARGEGRHRSRDTKDRGRSKMEVDRDWSKENEMGKNKDKDRGIDEQKYDDRERGRSKDRRKEMERNRSRERETDRDRRRERDVERDRRVKERGRSREREVQRDRRVERERGWSREREVERDRRMEKERGWSKEREVDRGRRAEKERCRSTDREGNRDRRREREKDRSKEKEVDWDGRRDRDRDRNDDKAEYSDRNRDKERVREMQKDRYRDKEFDRDRQDDRNKNKSSDILTSKDKYGNLEHGYVKGSKQSRHYDNEFGLDGGRTNAVEKQGSFKRNNREEGEDKLMSDHDGEEEDGDSMSFQLADEEEEDLNRIKEESRRRRQAILEKYKCQQLEKQVEPSLKESEKGKDSANDSSQSEAAAHAIPELVDGVVDDSVTDSSFAVEKSPQQNGVNATDKTAGTKGLGEGTPKAEGSDGLFCDDIFGETPAAVRKMGKGDGLQIERSGLHDNWDDADGYYNYRFGEVLDGRYEIAAAHGKGVFSTVVRAKDLKAGHAEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLSYDHPMDIWSVGCCLYELSTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPGEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITGNLLYDDLSFWHNYGMIEFRRGHIGQEWRVLSVECTVSIDVCFCSERTFQCLSDLEALRRRCMCIYDHDLFYHATYHHYGVVGNKDMISFMEALALERLTAVAPCEVVLQANCISSPFSCKYFEFHTQLLQEMHEYGRMIGIEQSTQKPSAIHSKRWVVRDLSVMNTIDEVLCFVAGESFYWVLTIIISHGLLVRWLVIPFIKNFLIFICNGSLKRTPKRLFFGAVHLAVPVCFVLLPQAVRLTTISSRRRFVQCRTGLGSWMDKLVPNCSLYQCKSETGLNHFIGYAYEMAMKKAISVKFIVSSEKVVENTMVTCLHTWICVYSKTASFPPRKEKLSEFPYQRFLRNMGKKLDALLGRSFKTTRFKALVNLAISRLAVLANQRQVRSSQARSDVVQLLQLGHQERALFRVEQVIKDQKLLDAYAIIESYCEVVLERIKLLEHERECPEELKEAISGLIFASSRCGDFPELIEIRSVITSRFGKEFTARAIELRNNCAVGPMIVQKLSARPPSLEIKLKLLKQIASEHGITLKDLEAYEVSTETQEKVVAEEKKDQPQQETKVEGVFQILPEEIEKDNRYADSMRGRRKYKDVADAAQAAFESAAYAAAAARAAVELSQSKSLDHDDPSSLSPKPRKYTETLESKNTEIELESENKETHSGSRSIGVEESENGTESKQPVSSSSSEAGNASLKENEIPIEAIIDLLEKDLVFDESDIDAGNGESSSSTLEERNLSFECREKMESESTEITANNEESDNKNTAQNLSIENKAVIRTIDVRGH 1909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33767910 33786442 + CcPI632755_05g025490.1 Cco05g2549 180177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2549 1909 Gene3D Phosphorylase Kinase; domain 1 782 871 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 234 258 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 40 70 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 1 24 - -
Cco05g2549 1909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 939 951 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2549 1909 MobiDBLite consensus disorder prediction 1747 1823 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 25 39 - -
Cco05g2549 1909 Pfam Regulator of Vps4 activity in the MVB pathway 1495 1658 IPR005061 GO:0015031(InterPro)
Cco05g2549 1909 MobiDBLite consensus disorder prediction 204 711 - -
Cco05g2549 1909 CDD STKc_PRP4 811 1127 IPR044092 GO:0004674(InterPro)|GO:0006468(InterPro)|GO:0045292(InterPro)
Cco05g2549 1909 Gene3D - 1482 1668 IPR042277 -
Cco05g2549 1909 FunFam serine/threonine-protein kinase PRP4 homolog 782 871 - -
Cco05g2549 1909 FunFam Vacuolar protein sorting-associated protein IST1 1485 1667 - -
Cco05g2549 1909 SMART serkin_6 812 1127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2549 1909 MobiDBLite consensus disorder prediction 1861 1876 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 628 647 - -
Cco05g2549 1909 Coils Coil 646 666 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 648 695 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 1845 1893 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 266 281 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 1793 1819 - -
Cco05g2549 1909 Pfam Protein kinase domain 816 1127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2549 1909 SUPERFAMILY Protein kinase-like (PK-like) 799 1137 IPR011009 -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 301 600 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 204 228 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 1747 1792 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 1 95 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 725 755 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 1877 1893 - -
Cco05g2549 1909 FunFam Serine/threonine-protein kinase PRP4 homolog 872 1128 - -
Cco05g2549 1909 MobiDBLite consensus disorder prediction 725 740 - -
Cco05g2549 1909 PANTHER DUAL SPECIFICITY PROTEIN KINASE 416 1130 IPR050494 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Cco05g2549 1909 ProSiteProfiles Protein kinase domain profile. 812 1127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2549 1909 Gene3D Transferase(Phosphotransferase) domain 1 872 1128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2549 K08827 - - csv:101220260 1815.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2549 Cco-Chr5:33767910 Cco08g0656 Cco-Chr8:17315861 7.10E-67 dispersed
Cco01g0569 Cco-Chr1:5620830 Cco05g2549 Cco-Chr5:33767910 1.00E-37 transposed
Cco01g1865 Cco-Chr1:31176088 Cco05g2549 Cco-Chr5:33767910 3.80E-42 transposed
Cco03g0983 Cco-Chr3:14264397 Cco05g2549 Cco-Chr5:33767910 7.60E-38 transposed
Cco03g1637 Cco-Chr3:31067399 Cco05g2549 Cco-Chr5:33767910 1.60E-37 transposed
Cco04g1844 Cco-Chr4:33214563 Cco05g2549 Cco-Chr5:33767910 5.50E-36 transposed
Cco05g1344 Cco-Chr5:14275467 Cco05g2549 Cco-Chr5:33767910 3.70E-61 transposed
Cco08g0387 Cco-Chr8:8470807 Cco05g2549 Cco-Chr5:33767910 6.40E-35 transposed
Cco08g0653 Cco-Chr8:17243164 Cco05g2549 Cco-Chr5:33767910 1.40E-06 transposed
Cco11g0624 Cco-Chr11:6755564 Cco05g2549 Cco-Chr5:33767910 1.10E-41 transposed
Cco05g2549 Cco-Chr5:33767910 Cco08g0652 Cco-Chr8:17238536 6.70E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g289 . . . . . Bpe10g00940 . Bma15g00084 . Cmo18g01044 . Cma18g01031 . Car18g00954 Sed06g1874 Cpe09g00289 Cpe01g01779 Bhi07g01341 Tan04g0880 Cmetu10g0761 Lac13g0479 Hepe01g1205 . . Cla05g02312 . Cec05g2507 Cco05g2549 Clacu05g2480 Cmu05g2341 Cre05g2458 Cone13ag0839 . . Cone9ag0468 Lsi04g00267 Csa05g02599 Chy10g01134 Cme10g00273 Blo06g00966 . . . Bpe11g01695 Bpe02g02080 . . . Cmo04g02140 . Cma04g02037 . Car04g01983 . . . . . . . . . . . . . . . . . . . Chy09g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86877 PF00069 Pkinase 4.50E-46 CL0016 Cco PK