Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2560 ATGGCGAATATTTCTCTCTTCCTTTTCGCCCTTCTTTTCGCCTCTCTTCCCGGCTTTCTCTCCCGGAGCTTGCCTCCGACAGCCAAAACCTCCGTCCTCGATGTGGCCGCTGCCATTCAGAGGACTCAACAGATCTTCGTATTGGAGCCTAAATCTTCAATGCGAGATGAAAATACTGTCTCCGATTCATCTTCCTTGACTCTCCAGTTGAATTCCAGGATTTCAGTTATGCAAACCTCACACAGTAACTACAAATCCCTCACATTATCCAGACTGAAGCGCGACTCTGCTCGAGTCAGATCTTTGACTGCTAGGATAGATCTAGCCATTCGAGGAATTACTGGAGCAGATCTTGAACCTCTCGGGAATAGTGGTGGTGGTTCGCAATTTGGGGCTGAGGATTTCGAGAGTCCGATTGTGTCAGGCGCGAGTCAGGGGAGTGGCGAATACTTCTCCCGAGTCGGAATCGGTAGGCCGCCGAGTCCGGTTTACATGGTGCTCGATACTGGCAGTGATGTAAGTTGGATACAATGCGCGCCGTGCGCTGAATGTTACGAGCAAACCGATCCAATTTTTGAGCCTACTTCCTCTGCTTCTTTCACATCTCTGTCCTGCGAAACAGAGCAATGCAAATCGCTCGATGTTTCAGAGTGCCGGAATGGTACTTGTCTCTACGAGGTCTCTTACGGCGATGGCTCTTACACCGTCGGCGATTTCGTTACTGAAACAGTTACTCTCGGCTCGACTTCTCTCAGAAACATTGCCCTAGGCTGCGGCCATAATAATGAGGGTTTATTCATCGGCGCTGCCGGCTTGCTCGGACTCGGCGGCGGCTCGCTCTCGTTCCCTTCGCAGCTTAATGCCTCGTCTTTCTCGTACTGTCTGGTGGACCGTGACTCTGATTCCACCTCGACTCTCGATTTCAACTCACCGATTCCTCCCGATGCCTTAATCGCGCCGCTTCACCGGAACCCTAATTTAGACACGTTCTTTTACCTCGGCGTGACGGGGCTAAGCGTCGGAGGTGATATTCTTCCGATTCCCGAGACGTCGTTCCAAATGAGCCAAGACGGTAACGGCGGGATCATCATCGACTCCGGCACCGCCGTGACTCGGTTGCAGACCACTGTTTATAACCTTCTTCGAGACGCGTTCGTCAAGAGTACGCACGATTTGCAGTCCGCACGTGGCGTGGCGTTGTTCGATACATGTTACGACTTGTCGTCGAAGTCGAGAGTCGAAGTGCCAACGGTGTCGTTTCATTTCGCGAACGGGAAGGAGTTGCCTTTGCCGGCCAAAAATTACCTGTTACCGGTTGACTCCGAAGGAACGTTTTGTTTCGCCTTTGCCCCTACGGATTCCACGTTATCAATCCTCGGGAACGCACAGCAGCAAGGGACACGTGTCAGTTTCGACCTCGCTAATTCGTTCGTTGGGTTCTCGCCCAACAAATGCTAA 1458 51.99 MANISLFLFALLFASLPGFLSRSLPPTAKTSVLDVAAAIQRTQQIFVLEPKSSMRDENTVSDSSSLTLQLNSRISVMQTSHSNYKSLTLSRLKRDSARVRSLTARIDLAIRGITGADLEPLGNSGGGSQFGAEDFESPIVSGASQGSGEYFSRVGIGRPPSPVYMVLDTGSDVSWIQCAPCAECYEQTDPIFEPTSSASFTSLSCETEQCKSLDVSECRNGTCLYEVSYGDGSYTVGDFVTETVTLGSTSLRNIALGCGHNNEGLFIGAAGLLGLGGGSLSFPSQLNASSFSYCLVDRDSDSTSTLDFNSPIPPDALIAPLHRNPNLDTFFYLGVTGLSVGGDILPIPETSFQMSQDGNGGIIIDSGTAVTRLQTTVYNLLRDAFVKSTHDLQSARGVALFDTCYDLSSKSRVEVPTVSFHFANGKELPLPAKNYLLPVDSEGTFCFAFAPTDSTLSILGNAQQQGTRVSFDLANSFVGFSPNKC 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33862764 33864221 - CcPI632755_05g025600.1 Cco05g2560 180188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2560 485 PANTHER ASPARTYL PROTEASES 54 485 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco05g2560 485 ProSiteProfiles Peptidase family A1 domain profile. 150 481 IPR033121 -
Cco05g2560 485 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 165 176 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco05g2560 485 FunFam Aspartyl protease family protein 2 310 485 - -
Cco05g2560 485 Pfam Xylanase inhibitor N-terminal 150 307 IPR032861 -
Cco05g2560 485 Pfam Xylanase inhibitor C-terminal 331 481 IPR032799 -
Cco05g2560 485 Gene3D Acid Proteases 313 485 IPR021109 -
Cco05g2560 485 SUPERFAMILY Acid proteases 144 485 IPR021109 -
Cco05g2560 485 Gene3D Acid Proteases 128 308 IPR021109 -
Cco05g2560 485 FunFam Probable aspartic protease At2g35615 130 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2560 K22683 - - csv:101222856 848.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1714 Cco-Chr1:29894611 Cco05g2560 Cco-Chr5:33862764 1.10E-160 dispersed
Cco05g2560 Cco-Chr5:33862764 Cco07g1205 Cco-Chr7:25911269 3.30E-53 dispersed
Cco01g0840 Cco-Chr1:8908779 Cco05g2560 Cco-Chr5:33862764 1.50E-114 transposed
Cco02g1546 Cco-Chr2:28071285 Cco05g2560 Cco-Chr5:33862764 3.00E-115 transposed
Cco05g0100 Cco-Chr5:860722 Cco05g2560 Cco-Chr5:33862764 2.70E-113 transposed
Cco09g0333 Cco-Chr9:2947253 Cco05g2560 Cco-Chr5:33862764 3.20E-59 transposed
Cco09g0942 Cco-Chr9:8835999 Cco05g2560 Cco-Chr5:33862764 1.20E-108 transposed
Cco11g1698 Cco-Chr11:29796306 Cco05g2560 Cco-Chr5:33862764 1.60E-72 transposed
Cco01g0596 Cco-Chr1:5930928 Cco05g2560 Cco-Chr5:33862764 1.20E-47 wgd
Cco01g1711 Cco-Chr1:29849851 Cco05g2560 Cco-Chr5:33862764 2.80E-25 wgd
Cco05g2560 Cco-Chr5:33862764 Cco06g1689 Cco-Chr6:27438368 1.40E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g277 . . . . . Bpe10g00945 . Bma15g00079 . Cmo18g01052 . Cma18g01036 . Car18g00961 Sed07g2064 Cpe09g00282 . Bhi07g01357 Tan04g0891 Cmetu10g1611 Lac13g0470 Hepe01g1214 . . Cla05g02322 Cam05g2494 Cec05g2518 Cco05g2560 Clacu05g2488 Cmu05g2351 Cre05g2467 Cone13ag0848 Cone19ag0851 . . Lsi04g00280 Csa05g02091 Chy10g01124 Cme10g00282 Blo06g00969 . . . . . . . . . . . . . . . Cpe04g01410 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002030 1 2 1 2 2 2 4 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 66