Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2563 ATGTCCAAATTGGTAGCGAGGCAAAAGAAGAAGGAAAAAAGACAAAACAATCAATACGGTTGTAGCAGCGTTGGCCAAGGAAGCCAGTTCAGGAATCTCGCATCAGCTTCCAATTTTACCATTTGCGCACTCTTTCATGTCCCCGGAATTCTTAACCAAACCAAGAAGCAGTTGATAGTGGTCGTTGAAGGTACCGCTGCCATGGGTCCCTTCTGGCAAACTGTCGTATCCGATTACATTGAAAAGATCGTCAGATCTTTCTCTGGAAATGAATTAACTGGGCAGAAACCATCAACCTCTAATGTTGAGTTCTCTCTGGTCACGTTTCATACTCATGGATCATATTGTGGATGTTTGGTACAGCGGACTGGGTGGACAAGAGATGTTGATATTTTTATACAATGGCTTTCAGCTATTCCCTTTTCTGGTGGTGGTTTCAGTGACGCTGCAATAGCTGAAGGGCTAGCTGAAGCACTCATGATGTTCCCAACTCAGCCAAATGGTGGCCAGAATCAACAAACTATGGATATGCAGAAGCACTGTATTCTCGTTGCTGCAAGTAATCCTTATCCCCTGCCAACGCCAGTATACAGACCAGCAGTGCAAAATTTGGAGCAACATGACAATGTTGAACCAGGGAGTTCTCAGTCATATGCTGAAACAGTTGCTAAATCATTTTCTCAGTGCTTTATATCTCTTTCAGTTATTTGTCCAAAACAGCTTCCAAAGCTCAGAGCAATTTACACTGCTGGAAAGCGCAACCCCCGGGCAGCAGATCCAACTATTGATAATATTAAAACCCCCACATACCTAGTTTTGATCTCTGAAAGTTTTGTGGAGGCCCGTGCAGCTTTAAGTCGTCCTGGAATTACCAGTTTACCTGCAAACCAGAGTCCTGTGAAAATGGACATATCTCCTGTTGTGCCTGTTACTGGACCACCTCCTACCACTACTCCATCAGTAAATGGACCTATCATTAACCGGCAGCCAGTGCCTATTGCTAATATCCCTCCTGCCACTGTGAAAGTTGAACCAAATACTGTTACATCTACGCCAAATGGATCTGGATATCCACCACATATGCCATCGGTTGTTCGTGCAGCTTCACAGGGAGTCCCAAGCTTGCAGACTTCTTCACCACTTTCTTCTCAGGAGATGATCACAAATAATGAGAACACACAAGACCTTAAACCTCTAGTGAATGGTGTTCCACAGCCTGTACGACCCGTGGGTCCTGCTAATGTTAGCATTCTGAATAATATTTCTCAAGCACGAGTGATGAGCACTGCTGCTTTAAATGGAGGAACTTCCATAGGACTCCCGTCTATGGGTCAAACCCCAATGGCCATGCATGTATCCAATATGATATCCAGTGGAATGGGATCATCTGTGCCTGCTGCACAAAATGTATTTTCATCTGGTCAATCTGGTATGACATCAATAAATGGGTCTTCAACTCTTACACAGGTTGCTCCAAACTCAGGTATAAGCTCACTTACTTCAGGAAATAACAATATTCCTGGAAATTCAAATATTGCCACTTCTCAAGCAGTAGGAAATCTCCAAGGTGGTGTTAGTGTGAGCCAATCAGTACCTGGGATTAGCCAAGGAAATCTTGCAGGGACACAAGTGGTACAAAGTGGAATTGGCGTGAGCCAAAATGTTATGAGCAACCTAAGCCAACCCGGTGGTTCTTCTGGAAATAGTACGATGATTCCTACACCAGGAATGCCTCAACAAGTTCAAAATGGGATGCATTCACTTGGTGTGAACAATGCAGCAGCTAACATGCCATTACCACAGCATTCAGCAGGTGCTTTGCAACAAGCACAATCCAAATACGTGAAATTTTGGGAGGGAAATCTATCTGGTCAGAGACAAGGCCAGCCTGTTTTTATCACCAGAATGGAAGGTTACAGGAGTGCTTCAGCTTCTGATAAGCTTGCAGCAAACTGGCCGCAGACAATGCAAATAGTTCGGCTTATCTCACAAGATCACATGAATAACAAGCAATATATTGGAAAAGCTGATTTTCTTGTTTTCCGAGCTATGAATCAGCATGGATTTCTTGGCCAGCTTCAAGAAAAGAAACTTTGTGCAGTCATCCAGTTACCATCCCAGACTTTACTGCTATCTGTTTCTGATAAAGCTTGCCGCTTAATAGGGATGCTTTTTCCTGGGGATATGGTTGTGTTTAAGCCTCAAATACCCAGTCAACAGCAACAACAGCAGCATCAAATGCAACAACAACAAATGCAACAGCAGCTGCAACAGCAACATCAGCTTTCTCAGTTGCAACAACATCAGCTTCCTCAGCTGCAACAACAGCAACAGCAGCAGCAGCAGCAACAACAACAGCATCCTCAGCTGCAACAACAACAGCAGCAGCAGCAGCAACAACAGCATCCTCAGCTGCAACAACAGCAACAGCAGCAGCAACTTTCTCAAATACAGCAGCAGCAGCAGCAACTTTCTCAAATACAGCAGCAGCAGCAGCATCCTCAGCTTCAACAGCAGCAGCAGCAGCAGCAGCAACCACAATTGTCACAGCTTCAAAGCCAGCAGATGCAGCAACAGCAGCAACAAATGGTCGCAGGTGGAATCGGTCAATCTTATGTCCAAGGAGGGCGATCGCAATTAGTTTCACAGGGACAAGTCTCTTCCCAGGGTCAAGCTAACATGCCGGGTGGAAGCTTTATGGGTTGA 2706 44.94 MSKLVARQKKKEKRQNNQYGCSSVGQGSQFRNLASASNFTICALFHVPGILNQTKKQLIVVVEGTAAMGPFWQTVVSDYIEKIVRSFSGNELTGQKPSTSNVEFSLVTFHTHGSYCGCLVQRTGWTRDVDIFIQWLSAIPFSGGGFSDAAIAEGLAEALMMFPTQPNGGQNQQTMDMQKHCILVAASNPYPLPTPVYRPAVQNLEQHDNVEPGSSQSYAETVAKSFSQCFISLSVICPKQLPKLRAIYTAGKRNPRAADPTIDNIKTPTYLVLISESFVEARAALSRPGITSLPANQSPVKMDISPVVPVTGPPPTTTPSVNGPIINRQPVPIANIPPATVKVEPNTVTSTPNGSGYPPHMPSVVRAASQGVPSLQTSSPLSSQEMITNNENTQDLKPLVNGVPQPVRPVGPANVSILNNISQARVMSTAALNGGTSIGLPSMGQTPMAMHVSNMISSGMGSSVPAAQNVFSSGQSGMTSINGSSTLTQVAPNSGISSLTSGNNNIPGNSNIATSQAVGNLQGGVSVSQSVPGISQGNLAGTQVVQSGIGVSQNVMSNLSQPGGSSGNSTMIPTPGMPQQVQNGMHSLGVNNAAANMPLPQHSAGALQQAQSKYVKFWEGNLSGQRQGQPVFITRMEGYRSASASDKLAANWPQTMQIVRLISQDHMNNKQYIGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPSQQQQQQHQMQQQQMQQQLQQQHQLSQLQQHQLPQLQQQQQQQQQQQQQHPQLQQQQQQQQQQQHPQLQQQQQQQQLSQIQQQQQQLSQIQQQQQHPQLQQQQQQQQQPQLSQLQSQQMQQQQQQMVAGGIGQSYVQGGRSQLVSQGQVSSQGQANMPGGSFMG 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33882028 33894129 - CcPI632755_05g025630.1 Cco05g2563 180191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2563 901 Coils Coil 807 830 - -
Cco05g2563 901 MobiDBLite consensus disorder prediction 492 511 - -
Cco05g2563 901 MobiDBLite consensus disorder prediction 1 20 - -
Cco05g2563 901 Coils Coil 738 758 - -
Cco05g2563 901 Coils Coil 773 800 - -
Cco05g2563 901 SUPERFAMILY vWA-like 56 204 IPR036465 -
Cco05g2563 901 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 54 889 - GO:0005667(PANTHER)|GO:0016592(PANTHER)|GO:0045944(PANTHER)
Cco05g2563 901 Pfam Mediator complex subunit 25 von Willebrand factor type A 53 276 IPR021419 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2563 K15168 - - csv:101203057 1262.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g274 . . Bda01g02088 . . . Bma14g01880 . Cmo04g01594 Cmo18g01054 . Cma18g01037 Car04g01572 Car18g00963 . Cpe09g00280 . Bhi07g01361 . . . Hepe01g1216 . . Cla05g02324 Cam05g2497 Cec05g2521 Cco05g2563 Clacu05g2491 Cmu05g2354 Cre05g2470 Cone13ag0850 . . . Lsi04g00282 Csa05g02587 Chy10g01122 Cme10g00284 . . Bda07g01703 . . Bpe02g02279 Bma01g00160 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1060 Blo01g00491 . Bda01g02088 . . . . . Cmo04g01594 Cmo18g01054 . Cma18g01037 Car04g01572 Car18g00963 . Cpe09g00623 Cpe01g01353 Bhi07g01361 . . . Hepe01g1216 . . Cla05g02324 Cam05g2497 Cec05g2521 Cco05g2563 Clacu05g2491 Cmu05g2354 Cre05g2470 . . . . Lsi04g00282 Csa05g02587 Chy10g01122 Cme10g00284 . . . . . Bpe02g02279 Bma01g00160 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007530 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36