Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2565 ATGGCCGCCGTACAGTGCACAAGCTTCTGCAAACCGTTTGGCACCAAAAGGCTTTTCTCCCCTTCTTCATTTGTCCTTTCAGTTTCCTGTACGAGTTATCCCACTTTCAAAGCTTCCAGCTCATTGCCGAACATCTCGATTTCCAGGTCGAATAGGGTTGTTCCGGCTGTGATTGCCGAAGAGAGTGCCGATGGGGCGACTGTTTCTGCTACTGATGCGTTTAATCTAACCTATCTGGAGGGAAATAGTTGGTTGTGGGAAGTGAGCGGATTGACCATTTTGGTAGATCCTGTTTTGGTTGGTAATCTTGATTTTGGTATCTCATGGCTGTATCAGGCCTCCAAGAAGATATTGAAGAATTTCCAGTTGAGTGAACTTCCTGAATTTGACTGCTTACTCATCACACAAAGCCTTGATGATCACTGCCATTTGAAGACCCTGAGGCCTCTCTCTAAGAAGTCCCCAAATGTAAAGGTTATAGCAACTCCAAATGCAAAGACATTGTTGGATCCACTTTTCAGCAATGTCACTTATCTAGAACCTGGTCAGAGTTCGGTTGTTGAAGCAAAAGATGGTTCTCAAGTACTCATTAAAGCCATTGCCGGACCAGTTCTAGGTCCTCCATGGCAGCGTCCTGAAAACGGGTATCTTGTTATTTCTCCCCAAGGTCAGCTGACTCTTTATTATGAACCTCATTGCTCTTACGACAAGGAATTTTTGGGAAAAGAAAGGGCTGATATTGTCATCACACCTGTGATAAAGCAGCTTCTGCCTAATTTTACTCTCGTTTCCGGACAAGAAGATGCAGTTCAACTTGCAAAGCTGCTGCATGCAAAGTTCATCGTGCCAATGAATAATGGAGATATGGATAGCAAAGGGCTTCTTGCAAGCTTAGTCAGTGCGGAAGGGACAATTGGATCTTTCAAGGAATTATTGTCAAAAGAACTTCCAGAGGCAGTTGTCTTGGAGCCTACTCCTGGCGTACCACTTAACATTTCTCCACCTTTAGATCAAGCGAAAGATCATTACGTTTCACTTTTCTGCACTAACATCCAACTCCCTCCATATCGTACATGTGGAAAATCCAACGATCTTCTCATAGGGATGATCCCAAGATTGATCCCTGAAAGATTATTTGCAGCTGTTTTAGGATCTCCTTGGAATGACTTTTCAACGGCCTGA 1182 43.91 MAAVQCTSFCKPFGTKRLFSPSSFVLSVSCTSYPTFKASSSLPNISISRSNRVVPAVIAEESADGATVSATDAFNLTYLEGNSWLWEVSGLTILVDPVLVGNLDFGISWLYQASKKILKNFQLSELPEFDCLLITQSLDDHCHLKTLRPLSKKSPNVKVIATPNAKTLLDPLFSNVTYLEPGQSSVVEAKDGSQVLIKAIAGPVLGPPWQRPENGYLVISPQGQLTLYYEPHCSYDKEFLGKERADIVITPVIKQLLPNFTLVSGQEDAVQLAKLLHAKFIVPMNNGDMDSKGLLASLVSAEGTIGSFKELLSKELPEAVVLEPTPGVPLNISPPLDQAKDHYVSLFCTNIQLPPYRTCGKSNDLLIGMIPRLIPERLFAAVLGSPWNDFSTA 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33903485 33907308 + CcPI632755_05g025650.1 Cco05g2565 180193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2565 393 PANTHER METALLO-HYDROLASE/OXIDOREDUCTASE SUPERFAMILY PROTEIN 29 333 - -
Cco05g2565 393 SUPERFAMILY Metallo-hydrolase/oxidoreductase 64 174 IPR036866 -
Cco05g2565 393 Gene3D - 74 332 IPR036866 -
Cco05g2565 393 Pfam Beta-lactamase superfamily domain 76 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2565 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g271 . . . . . Bpe10g00946 . Bma15g00078 . Cmo18g01058 . Cma18g01040 . Car18g00966 Sed07g2060 Cpe09g00277 . Bhi07g01366 Tan04g0895 Cmetu10g1426 . Hepe01g1218 . . Cla05g02326 Cam05g2499 Cec05g2523 Cco05g2565 Clacu05g2493 Cmu05g2356 Cre05g2472 . . . . Lsi04g00285 Csa05g02584 Chy10g01119 Cme10g00287 Blo06g00970 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011751 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30