Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2566 | ATGGATTTCCTTCATAATTTTCTGGATATTCGAGTAGGAATGGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCCGCAAAATTCAGGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTTGTCACCAGAGCTATTGAATCTTGCCGGCAACAGTTATCTGGAGTGTCGACAGAGAGCTCTGAACATACTTCAAGCGATGGCCCTGTTTTGGAGGAATTTATTCCGATTAACAAACCTTCTATGAATTCCCATTTTGAAATTGAAGAAGATGAACAATCAAAACCAGAGAAAATTGAATTGGGTCGATCGGATTGGCTTAAATCGGCTCAGCTTTGGAATCAGTCACCGGATCCTCCCGTTACAGAGGATGTTGCTAAGGAAACGACGTCATCGGTTGTTGAGGTAAAAAAGAATGTCGGTGGCGGTGCTTTTCAACCATTTCAGAAGGAGAAAACAACTCCATTGAAAACAGAGTCAGTGGTCGTCGGTAAATCGGACGGTTCTTCGCCAATTCCGGAGGCGACGACGAGTTCGACGGCGGAAACCGCCTCCAAAGGTGGCGGTGGAACCAGTAAACGAGAAGATAAGGAGTCCCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGTTTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCACGTTGCTACACCAAAACAAATCCGAGAGTTAATGAAGGTCGATGGACTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGGCGCCTCAGCAATTCGTGGTGGTCGGAAGCATATGGGTGCCGCCACCGCCTCCACCGAAATACACGGTGGCGACGACAGCGAAAGCGAGAAATGGGATTTATGCTCCGGTGGCGGTGCGACGGCAGACGACGGCAGAGGAAGGGAAGGCTAGCCACAGCGGGGGAGTGGTTCATTCGAATTCGCCGGCGACGTCTTCCTGCACCCACACCACCACAACCTCGCCGTCGGCGCCGTAG | 1068 | 50.47 | MDFLHNFLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIESCRQQLSGVSTESSEHTSSDGPVLEEFIPINKPSMNSHFEIEEDEQSKPEKIELGRSDWLKSAQLWNQSPDPPVTEDVAKETTSSVVEVKKNVGGGAFQPFQKEKTTPLKTESVVVGKSDGSSPIPEATTSSTAETASKGGGGTSKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVATTAKARNGIYAPVAVRRQTTAEEGKASHSGGVVHSNSPATSSCTHTTTTSPSAP | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33919454 | 33920904 | - | CcPI632755_05g025660.1 | Cco05g2566 | 180194 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2566 | 355 | Gene3D | - | 205 | 262 | - | - | |
Cco05g2566 | 355 | MobiDBLite | consensus disorder prediction | 191 | 211 | - | - | |
Cco05g2566 | 355 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 203 | 263 | IPR017930 | - | |
Cco05g2566 | 355 | MobiDBLite | consensus disorder prediction | 159 | 211 | - | - | |
Cco05g2566 | 355 | FunFam | Myb family transcription factor | 205 | 263 | - | - | |
Cco05g2566 | 355 | MobiDBLite | consensus disorder prediction | 159 | 189 | - | - | |
Cco05g2566 | 355 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 15 | 326 | IPR044787 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2566 | 355 | Coils | Coil | 16 | 36 | - | - | |
Cco05g2566 | 355 | SUPERFAMILY | Homeodomain-like | 203 | 264 | IPR009057 | - | |
Cco05g2566 | 355 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 206 | 261 | IPR006447 | GO:0003677(InterPro) | |
Cco05g2566 | 355 | MobiDBLite | consensus disorder prediction | 320 | 355 | - | - | |
Cco05g2566 | 355 | MobiDBLite | consensus disorder prediction | 331 | 355 | - | - | |
Cco05g2566 | 355 | Pfam | Myb-like DNA-binding domain | 208 | 259 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2566 | Cco-Chr5:33919454 | Cco11g0288 | Cco-Chr11:2925412 | 4.10E-45 | dispersed | |
Cco05g2566 | Cco-Chr5:33919454 | Cco08g0647 | Cco-Chr8:17115901 | 1.60E-73 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59378 | None | None | None | None | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2566 | - | - | - | 0.0 |