Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2566 ATGGATTTCCTTCATAATTTTCTGGATATTCGAGTAGGAATGGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCCGCAAAATTCAGGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTTGTCACCAGAGCTATTGAATCTTGCCGGCAACAGTTATCTGGAGTGTCGACAGAGAGCTCTGAACATACTTCAAGCGATGGCCCTGTTTTGGAGGAATTTATTCCGATTAACAAACCTTCTATGAATTCCCATTTTGAAATTGAAGAAGATGAACAATCAAAACCAGAGAAAATTGAATTGGGTCGATCGGATTGGCTTAAATCGGCTCAGCTTTGGAATCAGTCACCGGATCCTCCCGTTACAGAGGATGTTGCTAAGGAAACGACGTCATCGGTTGTTGAGGTAAAAAAGAATGTCGGTGGCGGTGCTTTTCAACCATTTCAGAAGGAGAAAACAACTCCATTGAAAACAGAGTCAGTGGTCGTCGGTAAATCGGACGGTTCTTCGCCAATTCCGGAGGCGACGACGAGTTCGACGGCGGAAACCGCCTCCAAAGGTGGCGGTGGAACCAGTAAACGAGAAGATAAGGAGTCCCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGTTTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCACGTTGCTACACCAAAACAAATCCGAGAGTTAATGAAGGTCGATGGACTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGGCGCCTCAGCAATTCGTGGTGGTCGGAAGCATATGGGTGCCGCCACCGCCTCCACCGAAATACACGGTGGCGACGACAGCGAAAGCGAGAAATGGGATTTATGCTCCGGTGGCGGTGCGACGGCAGACGACGGCAGAGGAAGGGAAGGCTAGCCACAGCGGGGGAGTGGTTCATTCGAATTCGCCGGCGACGTCTTCCTGCACCCACACCACCACAACCTCGCCGTCGGCGCCGTAG 1068 50.47 MDFLHNFLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIESCRQQLSGVSTESSEHTSSDGPVLEEFIPINKPSMNSHFEIEEDEQSKPEKIELGRSDWLKSAQLWNQSPDPPVTEDVAKETTSSVVEVKKNVGGGAFQPFQKEKTTPLKTESVVVGKSDGSSPIPEATTSSTAETASKGGGGTSKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVATTAKARNGIYAPVAVRRQTTAEEGKASHSGGVVHSNSPATSSCTHTTTTSPSAP 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33919454 33920904 - CcPI632755_05g025660.1 Cco05g2566 180194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2566 355 Gene3D - 205 262 - -
Cco05g2566 355 MobiDBLite consensus disorder prediction 191 211 - -
Cco05g2566 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Cco05g2566 355 MobiDBLite consensus disorder prediction 159 211 - -
Cco05g2566 355 FunFam Myb family transcription factor 205 263 - -
Cco05g2566 355 MobiDBLite consensus disorder prediction 159 189 - -
Cco05g2566 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 326 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2566 355 Coils Coil 16 36 - -
Cco05g2566 355 SUPERFAMILY Homeodomain-like 203 264 IPR009057 -
Cco05g2566 355 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 261 IPR006447 GO:0003677(InterPro)
Cco05g2566 355 MobiDBLite consensus disorder prediction 320 355 - -
Cco05g2566 355 MobiDBLite consensus disorder prediction 331 355 - -
Cco05g2566 355 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2566 Cco-Chr5:33919454 Cco11g0288 Cco-Chr11:2925412 4.10E-45 dispersed
Cco05g2566 Cco-Chr5:33919454 Cco08g0647 Cco-Chr8:17115901 1.60E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59378 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2566 - - - 0.0