Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2568 ATGGACGGTATTTGCATCGACGAAAGCACTTCCACTGAATCTCAATCCCCGGTGGTTAAATCTCCGCCGCCGGAGACCAGTCTCTGCCGCGTCGGGAGTGGCGTCACCAGTGTAGTTCTCGATTCCGACTCCAGCGGCGGCGGAGTTGAAGCAGAGTCCCGGAAACTACCATCGTCTCGTTACAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGGGCCCAGATTTACGAGAAACACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGATGAAGCAGCACGTGCCTACGACGTGGCTGCCCAACGTTTCCGTGGCCGTGACGCGGTTACCAATTTCAAACCTTTAGCACACGGCGGTGAAGACGACGACGCAGTTTCTGCCTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGCTACGTAAGCATACTTACTTAGACGAACTTCACCAAAGCAAACGAAACGCCGGGTTATCCGGTTGGGACCGGAAACGAGACCGATCGTTATCCGGGTTAGATACTGACCCGGAAACCGCTCGTGAACTTCTATTCGAAAAAGCCGTTACCCCAAGCGATGTGGGGAAATTGAACCGTTTGGTCATCCCGAAACAACACGCTGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTTTTGTTGAACTTCGAAGATGGAGGAGGTAAAGTTTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTATGTGCTGACCAAAGGATGGAGCCGCTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCCTGAAATCGACCGGACAAGATAAACAGCTTTACATTGAATGGAAGGCACGAAAGACTTCTACTACAACCGGGTCCGACATGAACCCGGTTCAGACCGTTAGACTGTTTGGAGTTGACATTATCAAAGTGTCGCCACATAGTGGGTGTAGTGAGAAGAGGAGGAGGGAATTGGAATTTCTCGCTTCACAATGTACCAAGAAACAAAGGATTGTGGGAGCAATGTAA 1047 50.91 MDGICIDESTSTESQSPVVKSPPPETSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLAHGGEDDDAVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGWDRKRDRSLSGLDTDPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKTSTTTGSDMNPVQTVRLFGVDIIKVSPHSGCSEKRRRELEFLASQCTKKQRIVGAM 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33928450 33929496 - CcPI632755_05g025680.1 Cco05g2568 180196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2568 348 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 314 IPR044800 GO:0003700(InterPro)
Cco05g2568 348 SMART rav1_2 60 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2568 348 ProSiteProfiles AP2/ERF domain profile. 60 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2568 348 FunFam AP2 domain-containing protein RAP2.8 59 116 - -
Cco05g2568 348 Pfam AP2 domain 59 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2568 348 Gene3D - 176 302 IPR015300 -
Cco05g2568 348 SUPERFAMILY DNA-binding pseudobarrel domain 185 279 IPR015300 -
Cco05g2568 348 CDD AP2 59 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2568 348 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677(InterPro)
Cco05g2568 348 Pfam B3 DNA binding domain 187 288 IPR003340 GO:0003677(InterPro)
Cco05g2568 348 MobiDBLite consensus disorder prediction 7 22 - -
Cco05g2568 348 ProSiteProfiles B3 DNA-binding domain profile. 187 292 IPR003340 GO:0003677(InterPro)
Cco05g2568 348 Gene3D AP2/ERF domain 59 116 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2568 348 CDD B3_DNA 186 274 IPR003340 GO:0003677(InterPro)
Cco05g2568 348 MobiDBLite consensus disorder prediction 1 30 - -
Cco05g2568 348 SMART B3_2 187 292 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1000 Cco-Chr3:15226349 Cco05g2568 Cco-Chr5:33928450 6.00E-104 dispersed
Cco05g2568 Cco-Chr5:33928450 Cco06g1417 Cco-Chr6:24673747 3.70E-46 dispersed
Cco05g2568 Cco-Chr5:33928450 Cco01g0128 Cco-Chr1:1127062 3.90E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59379 PF02362 B3 1.20E-27 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2568 K09287 - csv:101203784 625.55