Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2568 | ATGGACGGTATTTGCATCGACGAAAGCACTTCCACTGAATCTCAATCCCCGGTGGTTAAATCTCCGCCGCCGGAGACCAGTCTCTGCCGCGTCGGGAGTGGCGTCACCAGTGTAGTTCTCGATTCCGACTCCAGCGGCGGCGGAGTTGAAGCAGAGTCCCGGAAACTACCATCGTCTCGTTACAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGGGCCCAGATTTACGAGAAACACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGATGAAGCAGCACGTGCCTACGACGTGGCTGCCCAACGTTTCCGTGGCCGTGACGCGGTTACCAATTTCAAACCTTTAGCACACGGCGGTGAAGACGACGACGCAGTTTCTGCCTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGCTACGTAAGCATACTTACTTAGACGAACTTCACCAAAGCAAACGAAACGCCGGGTTATCCGGTTGGGACCGGAAACGAGACCGATCGTTATCCGGGTTAGATACTGACCCGGAAACCGCTCGTGAACTTCTATTCGAAAAAGCCGTTACCCCAAGCGATGTGGGGAAATTGAACCGTTTGGTCATCCCGAAACAACACGCTGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTTTTGTTGAACTTCGAAGATGGAGGAGGTAAAGTTTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTATGTGCTGACCAAAGGATGGAGCCGCTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCCTGAAATCGACCGGACAAGATAAACAGCTTTACATTGAATGGAAGGCACGAAAGACTTCTACTACAACCGGGTCCGACATGAACCCGGTTCAGACCGTTAGACTGTTTGGAGTTGACATTATCAAAGTGTCGCCACATAGTGGGTGTAGTGAGAAGAGGAGGAGGGAATTGGAATTTCTCGCTTCACAATGTACCAAGAAACAAAGGATTGTGGGAGCAATGTAA | 1047 | 50.91 | MDGICIDESTSTESQSPVVKSPPPETSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLAHGGEDDDAVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGWDRKRDRSLSGLDTDPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKTSTTTGSDMNPVQTVRLFGVDIIKVSPHSGCSEKRRRELEFLASQCTKKQRIVGAM | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33928450 | 33929496 | - | CcPI632755_05g025680.1 | Cco05g2568 | 180196 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2568 | 348 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 59 | 314 | IPR044800 | GO:0003700(InterPro) | |
Cco05g2568 | 348 | SMART | rav1_2 | 60 | 121 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2568 | 348 | ProSiteProfiles | AP2/ERF domain profile. | 60 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2568 | 348 | FunFam | AP2 domain-containing protein RAP2.8 | 59 | 116 | - | - | |
Cco05g2568 | 348 | Pfam | AP2 domain | 59 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2568 | 348 | Gene3D | - | 176 | 302 | IPR015300 | - | |
Cco05g2568 | 348 | SUPERFAMILY | DNA-binding pseudobarrel domain | 185 | 279 | IPR015300 | - | |
Cco05g2568 | 348 | CDD | AP2 | 59 | 114 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2568 | 348 | SUPERFAMILY | DNA-binding domain | 59 | 115 | IPR016177 | GO:0003677(InterPro) | |
Cco05g2568 | 348 | Pfam | B3 DNA binding domain | 187 | 288 | IPR003340 | GO:0003677(InterPro) | |
Cco05g2568 | 348 | MobiDBLite | consensus disorder prediction | 7 | 22 | - | - | |
Cco05g2568 | 348 | ProSiteProfiles | B3 DNA-binding domain profile. | 187 | 292 | IPR003340 | GO:0003677(InterPro) | |
Cco05g2568 | 348 | Gene3D | AP2/ERF domain | 59 | 116 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2568 | 348 | CDD | B3_DNA | 186 | 274 | IPR003340 | GO:0003677(InterPro) | |
Cco05g2568 | 348 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cco05g2568 | 348 | SMART | B3_2 | 187 | 292 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1000 | Cco-Chr3:15226349 | Cco05g2568 | Cco-Chr5:33928450 | 6.00E-104 | dispersed | |
Cco05g2568 | Cco-Chr5:33928450 | Cco06g1417 | Cco-Chr6:24673747 | 3.70E-46 | dispersed | |
Cco05g2568 | Cco-Chr5:33928450 | Cco01g0128 | Cco-Chr1:1127062 | 3.90E-40 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59379 | PF02362 | B3 | 1.20E-27 | CL0405 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2568 | K09287 | - | csv:101203784 | 625.55 |