Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2572 ATGTGTGGGGAGGATCAAGAAGAGGATCATCATCATCAACAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTCCACCAACAACAACAGCTACAAAACAACAACAACACTGATCATCATATGATGTACGGAGGAGATCATCTTCATCATCATGGAATTGGAAGATCAGGGTTAATTTTTCCACCCGAAATCGTGTCGCCCATGCTGCAACCGTGGTCGTCGCTTAACCCGTTTATGATCCCTCCGCCGCCACCACCGCCGCCATCAACATCATTATCATGTTCATCATCATCCTATGGTAGTTTGTTTAACCGAAGACCACCTAATTGTCTTCAATTTGCTTACGATGGTCCATCTTCAGCGGACCACCTAGGTCGAATCATATCGACCACACTCGGACCAGTAGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAGCTTGGGAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCGAAGCTCAGAAGCTTACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATTCCAACAGAAGTTGATGAGGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATGGATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGTTGTGAAGACCGTTCTGACCTTCTCCCTGATCTCATTAAAACCCTCAAATCCTTACGTTTAACAACTCTTAAAGCTGAAATCACAACTCTTGGTGGTCGTTTAAGAAATGTGTTGTTTGTCACTGCTGACGAAGAACAACAACAACAACAAAATATTAGCTCTATTATTCAAGATGCCCTCAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACTACCACTACAAATAACATTAATATCCTTTAA 1086 41.25 MCGEDQEEDHHHQQHQGECSQTIENMFQEQLLLHQQQQLQNNNNTDHHMMYGGDHLHHHGIGRSGLIFPPEIVSPMLQPWSSLNPFMIPPPPPPPPSTSLSCSSSSYGSLFNRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVSVDDASEQEMMMISNGSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQQQQNISSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINIL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33985852 33988326 - CcPI632755_05g025720.1 Cco05g2572 180200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2572 361 PANTHER TRANSCRIPTION FACTOR BHLH30 148 354 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2572 361 MobiDBLite consensus disorder prediction 347 361 - -
Cco05g2572 361 SMART finulus 179 228 IPR011598 GO:0046983(InterPro)
Cco05g2572 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 228 IPR036638 GO:0046983(InterPro)
Cco05g2572 361 FunFam transcription factor bHLH30 168 231 - -
Cco05g2572 361 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983(InterPro)
Cco05g2572 361 CDD bHLH_AtAIG1_like 168 245 - -
Cco05g2572 361 Gene3D - 168 229 IPR036638 GO:0046983(InterPro)
Cco05g2572 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983(InterPro)
Cco05g2572 361 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1603 Cco-Chr4:31378694 Cco05g2572 Cco-Chr5:33985852 3.70E-15 dispersed
Cco05g2572 Cco-Chr5:33985852 Cco06g1118 Cco-Chr6:17482946 2.40E-69 dispersed
Cco05g2572 Cco-Chr5:33985852 Cco08g1325 Cco-Chr8:25133399 3.00E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59381 PF00010 HLH 5.70E-13 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2572 - - - 0.0