Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2578 ATGGCTTCCGAGAGCGGTTCCAGATCCAGTTCAGCGGCCGATTCTTATATTGGAAGCTTGATAAACTTAACTTCCAAGAGTGAGATTAGATACGAAGGTGTTCTTTACAACATCAACACCGAAGAATCCAGTATCGGACTGAGAAATGTACGGTCATTTGGAACAGAAGGGAGAAAGAAGGATGGACCACAAATCCCACCAAGCGACAAAGTTTTTGAATACATCTTGTTCCGTGGAAGTGATATCAAGGATCTACAAGTAAAATCTTCTCCTCCTGTTCAGACTACATCCTTGATAAATAATGATCCAGCTATTATTCAGTCTCACTATCCTCGTCCAGCATCGACTTCTTCAAGCTTGCCTCCTCCTGTTAGTGGGCCTTTGCCTGATATTAATTCTCAGGCCATGCCTATGGGAATTCCTGGATCTAATTTCCAGGGTGGGTTGCCTTTATATCAACCTGGAGGAAATGTAGGGTCTTGGGGAGCTTCTCCTACGCCATCTCCCCCAAATCCAAGTGGTGGTGGGCTTGCTTTGCCAATGTACTGGCAAGGGTATTATGGCCCCCCTAATGGACTTCCTCATATGCAACAGCAGTCATTACTTCGTCCACCACCTGGCCTGTCATTGCCTTCTTCCTTGCAGCAGCCCCTGCAATATCCTAATCTTAATGCTTCTTTACCCACTGGGGCACCAAATTTATTAGAAGTTCCATCTTCTTTATTCTCTGCTAATCCTACCACTCCTAGTTTATCGTCCACAGCAATGCCACCAGTAACTGTATCTTCGTCACTCCCATCTGTGCTTTCGGCTCCACAGACCTCTGAGATATCATCAAGCTCAGTGGCCAACAAGACAGTATATTCTGCTCTTCCTCAAGCTCCTCTAAGTACTAATTTGCCATCGCTCTCTCCTTTGACGGCAAGTTCAGATGTCAGTCCTGTTGTGCCTCCAACTACTAACAAAACTACCACAGTTTCTGGTCCAGCATTGTCTTACCAAACTGTCTCTCAATCTACATCCTCTGTTGTTGGAACATCGAACTCTGATCTCACAGGTGCACCTGCACCTACCCTTGTGACTCCAGGACAGCTGTTGCAAACTACTGTAGCCTCTTCATCTTTGCAAAGTGTTCAAAAGGACGTTGAGGTGGTTCAAACATCTTCCTCCTTGGCAGCCGAACAAACTGTTCCAGCAGCCGATACTCAGCCACCATTATTACCATTACCGGTGTCTTCACAAGCTATCCATAAGCCAAATGGTTCAACTTCGCAAACTCGGTACATCCACAGGGGACGTGGTAGAGGAAGACGATTTGGGAACTCGCATCAAACAGAAAGATTTACAGAAGATTTTGACTTCACGGCAATGAATGAGAAATTTAACAAGGATGAAGTCTGGGGTCATCTTGGCAAGAATACCAAATCTCATCCAAAGTACAATGATGGGGATGAAAAGTTCAGTGATGAAGATGATGTCTATGAGGAAGATGATGGTGAATCTTCAAAGTTGGAGATCAAGCCTGTGTACAATAAGGACGACTTTTTTGATACTCTCTCGTGCAACAATCCTGACAATGAAGCTCAAAATGGAAGGAGGACCAGATACTACGAACAAATCAAGTTGGACACTGAGACATTTGGTGAATTTGCAAGATTCCGAGGTGGTCGTGGTGGTTTTTCTTCTGGACGTGGTGGCCATCGTGGTGGTTATTACGGGAGAGGATACAGCCATGTTGGAAGGGGTCGAGGGCGGGGAATGCATAACTATAATCCAAGTGCAGACGTAGTTTTAAGAAGCATTGGTGTTGTAGGCTCTCTGTCGACCCATAAGATGTACCAAAGGAGTTCTATTCCTTCAAGTCATCCTTCCCTACCTACCACTGTACTCTTGGCCGAGCCAAGATCGTTGAGCTGCAGACCGCCTTTCTCTGTCCCCATGGCCGCGGCATTGTCCTCACTCACCCCATTACTTATCTTTGCCAGAATCTTTGGTCTGCTTGTTGCCGTTCTGGTCTTCGTTTGGGCTTTTGCATTCAGTTCCAGCTTCGGCCATCGCTCCCCTGCCCGCGATGACCATCTCTTCGACGTTCTGCATCCTTTGTTCATGGTAGTTGGTCTCATTCTCCTCAGCGGGGAAGGAATTTTGGTCCATAGCTGGTTGCCTGGTTCGAGAAATTTGAGGAAATCTGTTCATCTGAGTCTTCAAGGGCTGGCTTTAGCTTCTGGGATTTCCGGAATTTGGACCAAGTTTCATTGGGATCGTGACTTTTTGGCTAATTTCCACAGTTTACATTCTTGGATGGGTTTGATTGTTGTCACTTTGTTCGGAGCTCAGTGGATGATGGGGTTTCTGAGCTTCTGGCATTGGAGGGAGGTGAGGGCAACAAGAGAAAGAGTGCTGCCATGGCATGTGTTCCTTGGGTTATACAGTTATGCATTGGCAGTGGTAACAGCAGAAACAGGGCTTCTTGAGAAGTTGACATTGTTGCAAACCAAGAGAAATGTCCCTAGGAAGGGTCCTGAAGCCATGGTTGTAAACAGTCTAGGCTTGGCACTGGCTTTGCTTACTGGAACTGTTATGCTCACTGCTATATCTCCTAAATATCCTCCTTCCCTCCCCATCACCAAACAACAACCATTTTTCTCTAATTCAAAGCCCTTACCTTCTTAA 2673 46.02 MASESGSRSSSAADSYIGSLINLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQIPPSDKVFEYILFRGSDIKDLQVKSSPPVQTTSLINNDPAIIQSHYPRPASTSSSLPPPVSGPLPDINSQAMPMGIPGSNFQGGLPLYQPGGNVGSWGASPTPSPPNPSGGGLALPMYWQGYYGPPNGLPHMQQQSLLRPPPGLSLPSSLQQPLQYPNLNASLPTGAPNLLEVPSSLFSANPTTPSLSSTAMPPVTVSSSLPSVLSAPQTSEISSSSVANKTVYSALPQAPLSTNLPSLSPLTASSDVSPVVPPTTNKTTTVSGPALSYQTVSQSTSSVVGTSNSDLTGAPAPTLVTPGQLLQTTVASSSLQSVQKDVEVVQTSSSLAAEQTVPAADTQPPLLPLPVSSQAIHKPNGSTSQTRYIHRGRGRGRRFGNSHQTERFTEDFDFTAMNEKFNKDEVWGHLGKNTKSHPKYNDGDEKFSDEDDVYEEDDGESSKLEIKPVYNKDDFFDTLSCNNPDNEAQNGRRTRYYEQIKLDTETFGEFARFRGGRGGFSSGRGGHRGGYYGRGYSHVGRGRGRGMHNYNPSADVVLRSIGVVGSLSTHKMYQRSSIPSSHPSLPTTVLLAEPRSLSCRPPFSVPMAAALSSLTPLLIFARIFGLLVAVLVFVWAFAFSSSFGHRSPARDDHLFDVLHPLFMVVGLILLSGEGILVHSWLPGSRNLRKSVHLSLQGLALASGISGIWTKFHWDRDFLANFHSLHSWMGLIVVTLFGAQWMMGFLSFWHWREVRATRERVLPWHVFLGLYSYALAVVTAETGLLEKLTLLQTKRNVPRKGPEAMVVNSLGLALALLTGTVMLTAISPKYPPSLPITKQQPFFSNSKPLPS 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34027209 34035585 - CcPI632755_05g025780.1 Cco05g2578 180206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2578 890 SMART LSM14_2 10 110 IPR025609 -
Cco05g2578 890 SMART 561_7 698 823 IPR006593 -
Cco05g2578 890 MobiDBLite consensus disorder prediction 468 486 - -
Cco05g2578 890 FunFam Trailer hitch, isoform C 10 92 - -
Cco05g2578 890 CDD LSm14_N 16 87 IPR025609 -
Cco05g2578 890 ProSiteProfiles Sm domain profile. 8 91 IPR047575 GO:0003723(InterPro)
Cco05g2578 890 ProSiteProfiles Cytochrome b561 domain profile. 660 865 IPR006593 -
Cco05g2578 890 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Cco05g2578 890 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Cco05g2578 890 MobiDBLite consensus disorder prediction 468 504 - -
Cco05g2578 890 CDD Cyt_b561_ACYB-1_like 692 831 - -
Cco05g2578 890 PANTHER SCD6 PROTEIN-RELATED 13 586 - GO:0000932(PANTHER)|GO:0003729(PANTHER)|GO:0033962(PANTHER)|GO:0034063(PANTHER)
Cco05g2578 890 MobiDBLite consensus disorder prediction 156 176 - -
Cco05g2578 890 SMART FDF_2 446 551 IPR019050 -
Cco05g2578 890 FunFam Cytochrome b reductase 1 650 872 - -
Cco05g2578 890 ProSiteProfiles TFG box profile. 531 551 IPR025768 -
Cco05g2578 890 ProSiteProfiles DFDF domain profile. 440 476 IPR025762 -
Cco05g2578 890 Gene3D - 647 870 - -
Cco05g2578 890 Gene3D - 6 92 - -
Cco05g2578 890 ProSiteProfiles FFD box profile. 508 523 IPR025761 -
Cco05g2578 890 Pfam Eukaryotic cytochrome b561 698 828 IPR006593 -
Cco05g2578 890 Pfam FDF domain 447 550 IPR019050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0730 Cco-Chr7:14085734 Cco05g2578 Cco-Chr5:34027209 6.20E-23 transposed
Cco09g1370 Cco-Chr9:16655596 Cco05g2578 Cco-Chr5:34027209 5.50E-30 transposed
Cco11g0544 Cco-Chr11:5767083 Cco05g2578 Cco-Chr5:34027209 1.30E-47 transposed
Cco01g0601 Cco-Chr1:6011709 Cco05g2578 Cco-Chr5:34027209 1.30E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2578 K18749 - csv:101205721 900.968