Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2588 ATGTACAACAGTTATGTCAGCTCAACTGTATATTCCATTCGGAGTAAAGGGCCTCTTTCCCATTGCTTTAATGAGCGTCCCATCTCCTTAAATGAAAGATGTAATGGGAACCCGTTGCATCTTCCATCATCGTCATCATCATGTTGTTCTTGTTGTGTTTGTTATACATTTCCAACCCACAGAGTGGCTGTAGGCCCTAGCATGTTCTATGGGCCGAGGCAATCCACCTTGCTTCAATGGTCGATCTCTAGGAGGTTGATGTTGGGTTGCCGAAACCGGTTCTGTTATACGCTTCCTGAATATGGGCGTGTTCTGGATTGTTATGAGGCTCCTTTTTCTATAAGTGATGGTAGGACTTGTCATTGTAGTGATGGAAGGAGATATAGAAGATGTTGTATGATTTCTGATAGTAATTGTGAATTTGACAAATCGGATGAAGAGGACATTGCTGAGGCCATGATCAGTTTGATAAGGGAGGGTTTTGGAAGCCAGGAAAAAATTAAGTCATCCAAGAGAGTGGAAGTGGGAAACCAAAGAAAATGTGGAGCGAAGGAGAGAAATTTGAGTTCATCTAGACGATTAGAACTGGAGAAAAAGGTGAGAAGAGGTGTTGAGGAGAAAATTTTAAGTTCATTTGAAAAGATAAGAATAGACAGGGAAAGAGAGAGTAACAGTCAGCGAGAAAGAGAAGAGAGGAAAAGTAATAAGTTTGGTTCTTTAACTAGTAAACATAATAACAAAGTTGGATCAGTGGCAGTTGAGCTGAGGAAAGATGGATCTGGACTGAATGGTGATCAGTTAGTTCATTCAAGAGCTGATAATCAGAGTTTAAGAAAAGAAGGGTCTACTTGTTCATCTTATTATTCACTCTCCTCTTCTGGGGATATTGAGAGTGATGCTGAAGTTGAAGACAAGAATGTGCAATTTGTTGAAGAATCGTCCAGTGGCTACAGATACGACTCCATGAGTGATATGGGAGAAAAATTAGATGGGCAGATCAAGGTTGCGTTCAAGAGGCAAGCAGGCGATGAGAAGGGGCGAGAAGAGGAATCAGTGCTCTGTGATACTACAGTTGGGAATAGTGCCGATTGCCACTTGAGGAGGAACTCAGAGAATAAACTTAATGAAATGTCAACAACAGTAACATCCTCCATAAGTGGAACCTCTGATATGAACTCAAGATTGTCAAGGGCCAGGGAGAGTGGTTATGTAAGTACTTCAAGTTCCAAGAAGAAGTTTGTTGACAAGAAAGAGGAATCGAAAATGGCCGTGACTTTGAATGAGCAATCAAAACAATTTGATGTATCAGGTAAGAAAGTGGGTGGTGTGTTTATAAATGAAGGGAAAAAACTTGCAGAAGTATCAGAAATAAGCCACAGTAGTGCAGAAGAAATATCTCGTTCTCATAAAAGACTAACCATTAAGAATGAAAACCCAGAATTAGATGCAAATCTTATCAAGAAAGCAAGCAACAACAATCATGAAACTGGTCAGCCTGTCCTTAAAGAAAAAAGTTCAAGACGAAGTTCGTCATTTCAACAACTTATGTCAGAAAATAGGAAAGCTGAGAGAGAAAGGACCTCTCATCTGACAAGCCAGTCTGATGCTAATGAAAGTACAGGTCTCCATCTAACTTCTAATCAAGAGGTTGAAGAAACACATCATCAAATAGGAAATCATCCCACTGGAGAAGTGGAGTCGAGACAAAAGTTTCTTCATCTTGGTGTTATATCAGCAATCAAAGAGGGTAATAGCAGCACCTCTGTTTCAAGTTCTGAAATTAGAACACAAAATGGGGAACAAAATGCAGCATCAGTTAATGCATCAAATTTTATGGCTGAAGATATAAAGTCTTTGACAGATCAGAAAGCTTCTCAGAGAGTTATGTCCAGAAAAGGTTCCCGAGATGCTTCTAACAGTTCAGTGGTTCATGGTACCGATAAAATATCTGCTACACATTCTGAAAAAACATTTGAAAATAGAATCTTCAAGCAAGAAACTGATAAATCATTAGTGGAAAGAACTGTCAAGGAAACCATAATGATACATGATCAAAATAATGATCGTGTGCTGCAAACTGAATCGGGAAAAGTGGTTAAAAATCATGTAGAAAAACCAAAAGTTCAAGGATCCATTAATTTAAGTTCCCAAAGTAGTTTTCAAGGGATTGGTGTGAATAATAAAGAAAATAAAAGGTCACAGGCAGCGTTAATGCCTGCTCCATTTCAGCTTGTAGCTAGAGATCCACTACAAATAGATTCTACTAGTAAAACGGCAAGCCAAGTAGTTTCCAGAAGAACATCAGTAAGCACTTCAGGTGCTTCCTACATGCAGTCGGGTGGAAGTCCAGCTTTGGACCGTAAATCCTACCGAGGAAGTGGGGCAGATGAGAGTGTCGAGGATTCTGTATACCTTATCACTCCTGATGATACTCTAGGTTCAGCTGACCGTTTAGAGAGATCATCTGCACAGTTTGTTGGTGAGTTCATGGAGAAGTCCAGGAATGAACTCTTAATTTCTGAAAACCGTAAGGAGAAAAACATCTCTGGGGTTGATTTACTACATGAAGAGAAGCAGGGAGAAAATAATTTGGTAGATTATCAAATGAAGGACCATGACTCAAGGCTCTCGTCTGGGAGTTCTGGAACCAAGGGTCCTTCTGATGAAATGTGGCATGTAATTGACTCAACTACCGAGCAGCCTTCCAAAACTGATGATCCGGAGATTAGTGGACACAGTGAGAATGCAATTGTCAAGAGAAGTGGCAAATCCTTGTGGAACGTCATTTCAGACATAGTTCATCTCCGTTGGCATTCACGTGCTGAAACCTCTGAGTCAGCTTTAAGATCAGGTGGAAGAAATTCACCAAACGAGTCTGTTAGTAATGAAACATGGTTTTCCGGCCGTGAACATGAGGAGACTGATAATAAGAAAATGGAAAGAACCACAGTTTCTGAATTCACTTCTTCGGATCAGTTGGAAGAACCAAATCCTTCTGTCCAAGGCCAAGATTTATCTGATGATAAGAAAGCAGAAAGTAAATACTATGAAGTAGATACTCCATCTTCCCCAAATATAATAGAGACCAAGCCATCAGGTGGGACTTTGTTAGTTTCTGGAGAAGCGATCTTAACAGATGGTAGGAAGGTTGACGTTATTTCTTCTGGTTTGGATATAGAACAGTCATCATTACCAGTCTCTACCCAAGGCATAAGAGGATCTTCCATTATCCAAGAAATGTCTCATAGTGGTAAAAGTAATGCCTTTACAAGCAGCTCTGCAGATCAGTTGGGGCATTCTTCTGATGCTACATTATCAGAAATATCAACAACTGGAACCAAGGATGGGGAAGTGAAACAAAGGAAGCTTCAAAGAAACAAGCAAGTTCTAAAAGATCGGTTTGATGAATGGGAAGAAGCATACCTACTCGAGACTGAGCAGCGAAAAATTGACGAAATGTTTATGAGGGAAGCCCTAGCTGAAGCCAAGAAGGCTGCTGATACTTGGGAAGTGCCTGTTGGAGCAGTGTTGGTGAAACATGGAAAAATTATTGCTCGTGGCTGCAACCTGGTTGAAGAGTTGCGAGATTCCACAGCCCATGCCGAAATGATTTGCATTCAGGAGGCTTCAAAGCAATTAAAGACATGGAGGCTTGCTGAGACAACTCTTTACGTGACACTTGAGCCTTGCCCGATGTGTGCTGGAGCGATACTTCAAGCACGAATCGAAAATCTTGTGTGGGGAGCACCAAATAAGCTTCTTGGAGCTGATGGCAGCTGGATCAGACTTTTCCCTGATGGTGGAGAGGGAAATGTGTCAGACCAGTCTGAGAAGCCTGCTGCACCCGTCCACCCGTTCCACCCGAAAATGAAAATCCGACGAGGTGTATTGGCATCGGAATGTGCTGATGTAATGCAACAATTCTTTCAGTTAAGGAGAAGAAAGAAGCAAAAGAAAGAAAACACTCCACCTCTAGCCATTACGCATCATCCATCAAAATTTATTACTAAGATGCATGACATTTTCCACATATTGTTCTGTTTGTAA 4047 40.92 MYNSYVSSTVYSIRSKGPLSHCFNERPISLNERCNGNPLHLPSSSSSCCSCCVCYTFPTHRVAVGPSMFYGPRQSTLLQWSISRRLMLGCRNRFCYTLPEYGRVLDCYEAPFSISDGRTCHCSDGRRYRRCCMISDSNCEFDKSDEEDIAEAMISLIREGFGSQEKIKSSKRVEVGNQRKCGAKERNLSSSRRLELEKKVRRGVEEKILSSFEKIRIDRERESNSQREREERKSNKFGSLTSKHNNKVGSVAVELRKDGSGLNGDQLVHSRADNQSLRKEGSTCSSYYSLSSSGDIESDAEVEDKNVQFVEESSSGYRYDSMSDMGEKLDGQIKVAFKRQAGDEKGREEESVLCDTTVGNSADCHLRRNSENKLNEMSTTVTSSISGTSDMNSRLSRARESGYVSTSSSKKKFVDKKEESKMAVTLNEQSKQFDVSGKKVGGVFINEGKKLAEVSEISHSSAEEISRSHKRLTIKNENPELDANLIKKASNNNHETGQPVLKEKSSRRSSSFQQLMSENRKAERERTSHLTSQSDANESTGLHLTSNQEVEETHHQIGNHPTGEVESRQKFLHLGVISAIKEGNSSTSVSSSEIRTQNGEQNAASVNASNFMAEDIKSLTDQKASQRVMSRKGSRDASNSSVVHGTDKISATHSEKTFENRIFKQETDKSLVERTVKETIMIHDQNNDRVLQTESGKVVKNHVEKPKVQGSINLSSQSSFQGIGVNNKENKRSQAALMPAPFQLVARDPLQIDSTSKTASQVVSRRTSVSTSGASYMQSGGSPALDRKSYRGSGADESVEDSVYLITPDDTLGSADRLERSSAQFVGEFMEKSRNELLISENRKEKNISGVDLLHEEKQGENNLVDYQMKDHDSRLSSGSSGTKGPSDEMWHVIDSTTEQPSKTDDPEISGHSENAIVKRSGKSLWNVISDIVHLRWHSRAETSESALRSGGRNSPNESVSNETWFSGREHEETDNKKMERTTVSEFTSSDQLEEPNPSVQGQDLSDDKKAESKYYEVDTPSSPNIIETKPSGGTLLVSGEAILTDGRKVDVISSGLDIEQSSLPVSTQGIRGSSIIQEMSHSGKSNAFTSSSADQLGHSSDATLSEISTTGTKDGEVKQRKLQRNKQVLKDRFDEWEEAYLLETEQRKIDEMFMREALAEAKKAADTWEVPVGAVLVKHGKIIARGCNLVEELRDSTAHAEMICIQEASKQLKTWRLAETTLYVTLEPCPMCAGAILQARIENLVWGAPNKLLGADGSWIRLFPDGGEGNVSDQSEKPAAPVHPFHPKMKIRRGVLASECADVMQQFFQLRRRKKQKKENTPPLAITHHPSKFITKMHDIFHILFCL 1348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34123174 34127830 - CcPI632755_05g025880.1 Cco05g2588 180216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2588 1348 Pfam MafB19-like deaminase 1152 1262 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Cco05g2588 1348 MobiDBLite consensus disorder prediction 1083 1113 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 622 648 - -
Cco05g2588 1348 Hamap tRNA-specific adenosine deaminase [tadA]. 1155 1313 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Cco05g2588 1348 Coils Coil 1120 1140 - -
Cco05g2588 1348 CDD nucleoside_deaminase 1167 1262 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 754 802 - -
Cco05g2588 1348 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1149 1271 IPR002125 -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 985 1004 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 485 517 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 267 284 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 944 964 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 754 779 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 1083 1120 - -
Cco05g2588 1348 FunFam tRNA-specific adenosine deaminase 1144 1324 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 378 400 - -
Cco05g2588 1348 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1129 1318 - GO:0009507(PANTHER)
Cco05g2588 1348 SUPERFAMILY Cytidine deaminase-like 1134 1315 IPR016193 GO:0003824(InterPro)
Cco05g2588 1348 MobiDBLite consensus disorder prediction 455 542 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 259 284 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 965 984 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 219 243 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 1018 1032 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 622 652 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 941 1033 - -
Cco05g2588 1348 Gene3D Cytidine Deaminase, domain 2 1139 1325 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 219 238 - -
Cco05g2588 1348 MobiDBLite consensus disorder prediction 455 477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2588 K11991 - - csv:101215576 2179.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2588 Cco-Chr5:34123174 Cco06g1559 Cco-Chr6:26165466 5.80E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32