Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2589 ATGAGCCGCGGCAGAAGGAGAAAGCTGCATTTTAGCAAGATCTACTCGTTTGCATGTGGGAAAGCTTCTTTAAAGGATGATCATTCACAACTCGGGGGTCCGGGGTTTTCTCGAGTTGTTTTCTGTAACGAACCAGAGTGTTTTGAGGCAGAAATTCGTAACTACATAGACAATCATATTAGTACAACCAAGTATACTCTAGCTACTTTCCTGCCTAAGTCATTGTTTGAGCAATTCAGGAGGGTGGCCAATTTCTATTTTTTAGTCAGTGGGATCCTTGCTTTTACTCCTCTTGCTCCTTACACGGCTGTTAGCGCGATTATCCCTCTTATTCTTGTCATTTCAGCGACAATGATCAAAGAAGGGATTGAGGATTGGAGGCGGAAGAAACAGGATATTGAGGTTAACAATAGAAAGGTTAAAGTGCATCAAGGTGATGGAGTTTTTGCTTATACAGAGTGGAAGAATCTGAGAGTGGGTAATATTGTGAGAGTGGAGAAGGATGAATTCTTTCCAGCAGATATTATCTTGCTTTCATCCAGTTATGAGGATGCAATCTGCTATGTTGAGACAATGAACCTTGATGGTGAGACAAATTTGAAACTAAAACAAGCATTGGAGGTGACTTCGCATATGCATGAGGATTCTATGTTCAACAGCTTTAAGGCTATCATAAAATGTGAGGATCCAAATGCAAATTTGTACAGTTTTGTTGGTAGTATGGAGTTGGAAGAGCAACAATATCCTCTATCTCCTCAACAACTACTCCTTCGAGACTCTAAACTCCGGAATACAGATTATATATATGGGGTGGTTGTCTTTACTGGTCGTGACACAAAGGTTATTCAAAATTCTACGGATCCACCTTCAAAGAGAAGCAAAGTTGAGAGGAAAATGGATAAAATTATATATATTTTGTTCTGTCTTCTATTTTTGCTTGCTCTTGTAGGATCTATATTTTTTGGCCTTGTGACTGACGAGGATTTGGAAAATGGGAGAATGAAGAGATGGTATCTCAGGCCTGATGATGCCAAAATTTTCTTTGATCCAAAAAGGGCTCCAATGGCTGCAATATTTCATTTTCTTACGGCACTGATGTTATATAATTACTTCATTCCAATCTCACTGTATGTATCAATAGAAATTGTCAAAGTTCTTCAGAGCATATTTATCAATCAAGATATTAATATGTATTATGAAGAAGCTGATAAACCTGCTCGTGCTCGCACCTCAAATTTGAATGAAGAACTTGGTCAAGTTGATACAATACTCTCTGACAAGACTGGAACTCTGACCTGTAATTCAATGGAGTTCATTAAGTGTTCTGTGGCAGGGAGGGCTTATGGACGGGGTTTCACAGAGGTAGAAAGGACTATAGGTAGACAAAAGGATTCACCCCTGCATGAAGCTGTAAATGGGGGGAATCACCGTGAGGATGCCAATGATAAAACTTCACATATCAAGGGCTTTAATTTTAAGGATGATAGGATTATGAATGGGAACTGGGTTAACGAGCCTCATGCAAATGTAATTCAAATGTTTTTCCGTCTTCTTGCAACTTGTCATACGGCAATACCTGAAATCAATGAGGACACTGGAGAGGTTTCTTACGAGGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCAGCTAGAGAACTCGGCTTTGAATTCTACAAAAGAACACAGACAAGCATATCACTGCACGAGTTTGATCCTTCATTAGGCAAGAAAGTTGATAGGACATATAAACTGCTGCATGTTCTGGAGTTTAATAGCTCAAGAAAGCGGATGTCTGTCATAGTAAGAGATGAAGAGGATAAAATATTATTATTCTGTAAAGGTGCAGACAGTATCATGTTTGAAAGACTTGGAAAGAATGGAAGGGAGTTTGAAGAGGAGACCAAGGAACATGTCAATGAGTATGCTGATGCAGGATTGAGGACTTTGATACTTGCCTATCGTGAGCTTGAAGAGGAAGAATACAGAGAATTTGATGACAAGTTCACTAAGGCCAAAAGTTCAGTTAGTGCAGATCGAGAATCATTGATTGAGAAAGTAACTGACAACATTGAGAGGAATTTAATTCTTCTTGGTGCCACTGCTGTTGAGGACAAGCTTCAAAATGGGGTTCCTGAGTGCATTGACAGGCTTGCTCAGGCCGGAATTAAGATTTGGGTTTTGACCGGGGACAAAATGGAGACTGCCATTAATATTGGTTTTGCCTGTAGCTTACTAAGACAAGATATGAAGCAGATTGTTATTACCCTGGAGACATCAGAAATTAAGGCGCTAGAAAAGACAGGGGATAAGGCTTCTATCACCAAGGCATCAATGCAATGCGTCCTCGATCAAATTACTCGAGGGAGAGCTCAGATCACTTCACCAAATGGGTTATCTGAAGCATTTGCATTAATTATTGATGGAAAATCACTTTCTTATGCTTTAGAGGACAGTATGAAGGCATTGTTTCTTGAGGTAGCAACACATTGTGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCACTGGTAACAAGGTTAGTTAAATCTGGAACACGGAAAACAACTTTAGCTATTGGCGATGGTGCCAATGATGTGGGGATGCTTCAAGAAGCGGACATTGGAGTCGGAATTAGTGGTGCGGAAGGAATGCAGGCCGTTATGTCAAGTGATGTTGCAATTGCACAGTTTAAATATTTAGAGCGCCTGCTTCTTGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTATAAGAATATTACTTTTGGTTTTACCATATTCCTATACGAAGCATTCACATCATTCTCTGGGCAACCTGTATATAATGATTGGTTTTTATCGCTTTACAATGTTTTCTTCTCGTCGCTTCCAGTGGTAGCTTTGGGAGTTTTTGATCAGGATGTATCTGCAAGACTCTGTCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGCAGAATGTTCTTTTCAGCTGGCTCCGAATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCTGTGATCATTTTCTTCCTTTGCACTAGAGCACTCGAGCATCAGGCATTCAACTCCGATGGGAAAACTGCAGGGCGGGATATTTTGGGTGCAACAATGTACTCTTGTGTTGTTTGGGTTGTGAACTTGCAAATGGCGCTCGCTGTTAGTTACTTCACCTTGATACAGCATCTTTTCATCTGGGGTTCGATTTCGATCTGGTACATTTTTCTCCTGATCTATGGGTCCATGACCCCCACCTTTTCAACCAATGCTTACCAGATTTTCATCGAAGTCCTTGCCCCTGGTCCTTCCTACTGGTTTGTGCTTCTGTTTGTGGTGATCACAACACTCATTCCTTACTTCTCCTACTCAGCTATACAGATGAGGTTCCTTCCCATGTATCATCAAATGATTTTATGGATTAGGAATGAAGGGCAACTAGACAACCAAGAGTACTGTGATATTTTCCGGAACACTTCCACTTTCCGATCAACGAGCGTGGGTTCCACAGCACGAAAGGGGAATGAACTCGATCTACGCAAATGTAAGGCCGAGAAAATCCGCCGCGGATTTGGCCATCACGGTGGTGAATTCGTTGAAGCTAATTACGCCGTCGCCGTCGGTATCGGCCTGTCGCATCATCTCGGAGAGTTCGCGGTAGGTCAGAGGATGGCCCATCTTCGCCATGGAACCAGCGAGCTCCGCAGCGGTGATGTAGCCATTGCCATCGCGATCGAAAGATCTGAAAACCTCCAACAATTGCTCTTGATTGACGAGAATATCGTCATTCATGTCGGGGAGAATGGCATTGACGAGTTCATCGAATTCGATGGAGCCGTTGCCGTTGGAATCCATGTTGGAGAGAAGAGAATGGAGTTGGTCGCCGGAGGGTTTGATGCCGAGGGAGCGGAGAAGGGCGCCGAGCTCGAGCTGCGTGAGGCTGCCGTCGGAGTTCATGTCGAAACGCCTGAAAATGTCGTGCAGCTGCTTGAGCTGCGGGTCGGATTGAATGGAAGCCATGGATTTGGTTCTTCAGACGATTCGACAAGATCCGCAAGGAGGAGTTCGTCGAAGTTGGGGGATTTGGAAAATGAGGAGATTGGTCAGTTAGGGATGTGA 4143 42.6 MSRGRRRKLHFSKIYSFACGKASLKDDHSQLGGPGFSRVVFCNEPECFEAEIRNYIDNHISTTKYTLATFLPKSLFEQFRRVANFYFLVSGILAFTPLAPYTAVSAIIPLILVISATMIKEGIEDWRRKKQDIEVNNRKVKVHQGDGVFAYTEWKNLRVGNIVRVEKDEFFPADIILLSSSYEDAICYVETMNLDGETNLKLKQALEVTSHMHEDSMFNSFKAIIKCEDPNANLYSFVGSMELEEQQYPLSPQQLLLRDSKLRNTDYIYGVVVFTGRDTKVIQNSTDPPSKRSKVERKMDKIIYILFCLLFLLALVGSIFFGLVTDEDLENGRMKRWYLRPDDAKIFFDPKRAPMAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDINMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGRAYGRGFTEVERTIGRQKDSPLHEAVNGGNHREDANDKTSHIKGFNFKDDRIMNGNWVNEPHANVIQMFFRLLATCHTAIPEINEDTGEVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFDPSLGKKVDRTYKLLHVLEFNSSRKRMSVIVRDEEDKILLFCKGADSIMFERLGKNGREFEEETKEHVNEYADAGLRTLILAYRELEEEEYREFDDKFTKAKSSVSADRESLIEKVTDNIERNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGFACSLLRQDMKQIVITLETSEIKALEKTGDKASITKASMQCVLDQITRGRAQITSPNGLSEAFALIIDGKSLSYALEDSMKALFLEVATHCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQPVYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVLFSWLRILSWMFNGLCSAVIIFFLCTRALEHQAFNSDGKTAGRDILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSISIWYIFLLIYGSMTPTFSTNAYQIFIEVLAPGPSYWFVLLFVVITTLIPYFSYSAIQMRFLPMYHQMILWIRNEGQLDNQEYCDIFRNTSTFRSTSVGSTARKGNELDLRKCKAEKIRRGFGHHGGEFVEANYAVAVGIGLSHHLGEFAVGQRMAHLRHGTSELRSGDVAIAIAIERSENLQQLLLIDENIVIHVGENGIDEFIEFDGAVAVGIHVGEKRMELVAGGFDAEGAEKGAELELREAAVGVHVETPENVVQLLELRVGLNGSHGFGSSDDSTRSARRSSSKLGDLENEEIGQLGM 1380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34145858 34155067 + CcPI632755_05g025890.1 Cco05g2589 180217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2589 1380 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Cco05g2589 1380 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
Cco05g2589 1380 SUPERFAMILY HAD-like 419 917 IPR036412 -
Cco05g2589 1380 SUPERFAMILY Calcium ATPase, transduction domain A 139 283 IPR008250 -
Cco05g2589 1380 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 1144 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Cco05g2589 1380 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1140 IPR032630 -
Cco05g2589 1380 FunFam Phospholipid-transporting ATPase 698 902 - -
Cco05g2589 1380 Gene3D - 544 697 IPR023299 GO:0000166(InterPro)
Cco05g2589 1380 FunFam Phospholipid-transporting ATPase 540 698 - -
Cco05g2589 1380 Gene3D - 698 902 IPR023214 -
Cco05g2589 1380 FunFam Phospholipid-transporting ATPase 116 286 - -
Cco05g2589 1380 Pfam Cation transport ATPase (P-type) 520 624 - -
Cco05g2589 1380 SFLD p-type atpase 408 913 IPR044492 -
Cco05g2589 1380 NCBIfam phospholipid-translocating P-type ATPase 55 1146 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cco05g2589 1380 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1140 IPR023298 -
Cco05g2589 1380 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 699 IPR023299 GO:0000166(InterPro)
Cco05g2589 1380 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
Cco05g2589 1380 MobiDBLite consensus disorder prediction 465 485 - -
Cco05g2589 1380 Gene3D - 115 286 - -
Cco05g2589 1380 NCBIfam HAD-IC family P-type ATPase 830 944 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco05g2589 1380 MobiDBLite consensus disorder prediction 1349 1380 - -
Cco05g2589 1380 SFLD Haloacid Dehalogenase 408 913 - -
Cco05g2589 1380 Pfam Phospholipid-translocating ATPase N-terminal 40 106 IPR032631 -
Cco05g2589 1380 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2589 Cco-Chr5:34145858 Cco05g2749 Cco-Chr5:35341328 2.30E-277 dispersed
Cco06g0899 Cco-Chr6:11443306 Cco05g2589 Cco-Chr5:34145858 0.00E+00 transposed
Cco09g0071 Cco-Chr9:617400 Cco05g2589 Cco-Chr5:34145858 0.00E+00 transposed
Cco01g1733 Cco-Chr1:30045065 Cco05g2589 Cco-Chr5:34145858 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2589 K01530 - csv:101207148 2213.73