Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2590 | ATGGCGGCCGTATCACCGGCGCCTAATTCATCTCCGTCGCCGGCTTCTCCCTCCACTCCATCTCCGCCGCCTCCGGTCGCATCTAATTCCCCACCTAGTACTCCGTCACTGTCGCCGCCGCAACAATCGCCTCCTCCGAATCCGTCTGACTCCGCGACTCCCACTTCATCTCCTCCTCCGCCGTCTCGTCAACCATCTGCTGCTTCACCTCCACCTGCATCTGAAACTCCGCCGCCATCAACACCCGCATTGTCTCCTCCGCCGCCTCGGATGGTTCCGCCGGCAACTCCACCATCAACTCCGTCCAATGCTCCACCCCCATCAACACCGGACCCTCCACCACCATCAGCAACCCCACCAGTAAGCTCCACTCCACCACCGCCATCTAATCCCCCACCAAATTCATCTCCACCTCCTGCAGCACAGCCTCCTCAATCCCCTCCACAATCATCAAAACCACCTGAAAAGCCCCCTCCGCTGCCGCCGCCACCACCACAAGCAAACCCGCCGGATAATCCAGCGCCGCCGCCACAGCCCACAGACCCACCTGGGAATTCACCTCCTACGCCACCATCAGCACTGCCTCCAGCTACCTCACCTCCTTCCCCAGCATCCATACCTCCAAGAAATTCACCTCCACCCCCAAGGCTTACTCCTCCTCCCGGTGAGCCCTCACTTTCAAGTCCTCCTCCTAGGTCATCACCGCCCCCATCTCCTCCACCACCACCGCCGTCACATCTTTCTCCTCCATTACCGTCTAAACCCCCAACATTGCCGTCAGGAAATCGTACGGACGATGGTTCTGGTCCTATTGATGGAGGAGCAAACTCGAAATCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATCGCCATTGGAGTAGTGGCAGGAATTATAGTGCTTTCCATAATTGGGTTTGTTGTTTGGTACATCAGGAGGCCAAGGAAAAATGATTCTGGGCGTGGAGGTTACATTATGCCATCCTCTCTGGGCTCCTCTCCTAAGTCGGAAACATCCCTTATGAAGGTCCATTCCACTGTTCATCAAGACATACATGCCAGTGGCAGTGCAAGTGGCAGTGGCAGTGGCAGTGGTGGAATATACACTCCAAAAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATACGAAGAACTCTTCAAAGCAACAGATGCATTTTCTACTCAGAACCTTTTAGGAGAAGGAGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCTGGAATTCAAAGCTGAAGTTGAGATTATTGGTCGTGTACACCATCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAGCATCAAAGGTTGCTGGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCACCTTCATCTCAAAGGGGATGGCGAGCTCGATCTGGAATGGACAAAGCGCATTAAGATCGCAGCTGGTGCAGCTCGGGGAGTTGCTTATCTTCATGAAGACTGCCACCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGATGAAAATTTTGAAGCTCGGGTTTCTGACTTTGGGCTTGCTAAATTAGCTCTCGACGAACAAACTCATATAACAACCCGTGTTGTGGGAACTTTTGGATACGTTGCCCCTGAATATGCATCGAGTGGAAAGTTAACTGAGAGGTCAGATGTATATTCTTTTGGAGTTGTACTTCTTGAGCTGATTACTGGTCGAAAGGCTGTGGACGCATCCCAACCAATGGGGAATGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCATGCACTCGACAGCCAAGATTTCGAAAAATTGGTGGACCCAAGGCTTGAAAGGAACTACGTTGAGAGTGAAATGTTGGGGATGATAGGAATAGCTGCTGCTTGCGTGCGGCACGCGTCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCCACAGCAGATTTAAGTAATGGAATGAGATTCGGGGAGAGTCAAGCTTTCGACTCCGGTCAACAGTCTGCTGAAATTAGATTTTTCCGGATGCTGGCCTTCGGTAACCAAGATTACAGTTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA | 2178 | 51.19 | MAAVSPAPNSSPSPASPSTPSPPPPVASNSPPSTPSLSPPQQSPPPNPSDSATPTSSPPPPSRQPSAASPPPASETPPPSTPALSPPPPRMVPPATPPSTPSNAPPPSTPDPPPPSATPPVSSTPPPPSNPPPNSSPPPAAQPPQSPPQSSKPPEKPPPLPPPPPQANPPDNPAPPPQPTDPPGNSPPTPPSALPPATSPPSPASIPPRNSPPPPRLTPPPGEPSLSSPPPRSSPPPSPPPPPPSHLSPPLPSKPPTLPSGNRTDDGSGPIDGGANSKSNSNGGISSGGVIAIGVVAGIIVLSIIGFVVWYIRRPRKNDSGRGGYIMPSSLGSSPKSETSLMKVHSTVHQDIHASGSASGSGSGSGGIYTPKELGGLGSSRPLFTYEELFKATDAFSTQNLLGEGGFGSVYKGYLPDGRVVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLKGDGELDLEWTKRIKIAAGAARGVAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGNESLVEWARPLLNHALDSQDFEKLVDPRLERNYVESEMLGMIGIAAACVRHASAKRPQMGQVVRAFDSLATADLSNGMRFGESQAFDSGQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA | 725 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34157701 | 34161449 | - | CcPI632755_05g025900.1 | Cco05g2590 | 180218 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2590 | 725 | MobiDBLite | consensus disorder prediction | 10 | 257 | - | - | |
Cco05g2590 | 725 | CDD | STKc_IRAK | 402 | 674 | - | - | |
Cco05g2590 | 725 | SUPERFAMILY | Protein kinase-like (PK-like) | 379 | 669 | IPR011009 | - | |
Cco05g2590 | 725 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 253 | 703 | IPR047117 | - | |
Cco05g2590 | 725 | FunFam | proline-rich receptor-like protein kinase PERK8 | 472 | 685 | - | - | |
Cco05g2590 | 725 | Pfam | Protein kinase domain | 397 | 605 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g2590 | 725 | Gene3D | Transferase(Phosphotransferase) domain 1 | 472 | 688 | - | - | |
Cco05g2590 | 725 | ProSiteProfiles | Protein kinase domain profile. | 396 | 674 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g2590 | 725 | ProSitePatterns | Protein kinases ATP-binding region signature. | 402 | 424 | IPR017441 | GO:0005524(InterPro) | |
Cco05g2590 | 725 | SMART | serkin_6 | 396 | 675 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g2590 | 725 | CDD | TM_EGFR-like | 286 | 318 | - | - | |
Cco05g2590 | 725 | Gene3D | Phosphorylase Kinase; domain 1 | 373 | 471 | - | - | |
Cco05g2590 | 725 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 369 | 471 | - | - | |
Cco05g2590 | 725 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 518 | 530 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g2590 | 725 | MobiDBLite | consensus disorder prediction | 1 | 283 | - | - | |
Cco05g2590 | 725 | PRINTS | Proline rich extensin signature | 36 | 53 | - | - | |
Cco05g2590 | 725 | PRINTS | Proline rich extensin signature | 61 | 86 | - | - | |
Cco05g2590 | 725 | PRINTS | Proline rich extensin signature | 18 | 34 | - | - | |
Cco05g2590 | 725 | PRINTS | Proline rich extensin signature | 1 | 18 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0825 | Cco-Chr1:8690719 | Cco05g2590 | Cco-Chr5:34157701 | 3.20E-61 | dispersed | |
Cco02g2405 | Cco-Chr2:36432191 | Cco05g2590 | Cco-Chr5:34157701 | 4.10E-30 | dispersed | |
Cco05g2590 | Cco-Chr5:34157701 | Cco11g0541 | Cco-Chr11:5714802 | 5.90E-147 | dispersed | |
Cco07g1410 | Cco-Chr7:28186903 | Cco05g2590 | Cco-Chr5:34157701 | 5.20E-55 | dispersed | |
Cco07g1705 | Cco-Chr7:31052254 | Cco05g2590 | Cco-Chr5:34157701 | 1.10E-59 | dispersed | |
Cco11g0455 | Cco-Chr11:4784682 | Cco05g2590 | Cco-Chr5:34157701 | 5.90E-40 | dispersed | |
Cco05g2590 | Cco-Chr5:34157701 | Cco05g2594 | Cco-Chr5:34214658 | 1.80E-67 | proximal | |
Cco02g0405 | Cco-Chr2:3653972 | Cco05g2590 | Cco-Chr5:34157701 | 1.30E-53 | transposed | |
Cco04g2114 | Cco-Chr4:35006454 | Cco05g2590 | Cco-Chr5:34157701 | 3.00E-45 | transposed | |
Cco01g0618 | Cco-Chr1:6247603 | Cco05g2590 | Cco-Chr5:34157701 | 2.50E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86878 | PF00069 | Pkinase | 4.60E-43 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2590 | - | - | - | 0.0 |