Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2590 ATGGCGGCCGTATCACCGGCGCCTAATTCATCTCCGTCGCCGGCTTCTCCCTCCACTCCATCTCCGCCGCCTCCGGTCGCATCTAATTCCCCACCTAGTACTCCGTCACTGTCGCCGCCGCAACAATCGCCTCCTCCGAATCCGTCTGACTCCGCGACTCCCACTTCATCTCCTCCTCCGCCGTCTCGTCAACCATCTGCTGCTTCACCTCCACCTGCATCTGAAACTCCGCCGCCATCAACACCCGCATTGTCTCCTCCGCCGCCTCGGATGGTTCCGCCGGCAACTCCACCATCAACTCCGTCCAATGCTCCACCCCCATCAACACCGGACCCTCCACCACCATCAGCAACCCCACCAGTAAGCTCCACTCCACCACCGCCATCTAATCCCCCACCAAATTCATCTCCACCTCCTGCAGCACAGCCTCCTCAATCCCCTCCACAATCATCAAAACCACCTGAAAAGCCCCCTCCGCTGCCGCCGCCACCACCACAAGCAAACCCGCCGGATAATCCAGCGCCGCCGCCACAGCCCACAGACCCACCTGGGAATTCACCTCCTACGCCACCATCAGCACTGCCTCCAGCTACCTCACCTCCTTCCCCAGCATCCATACCTCCAAGAAATTCACCTCCACCCCCAAGGCTTACTCCTCCTCCCGGTGAGCCCTCACTTTCAAGTCCTCCTCCTAGGTCATCACCGCCCCCATCTCCTCCACCACCACCGCCGTCACATCTTTCTCCTCCATTACCGTCTAAACCCCCAACATTGCCGTCAGGAAATCGTACGGACGATGGTTCTGGTCCTATTGATGGAGGAGCAAACTCGAAATCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATCGCCATTGGAGTAGTGGCAGGAATTATAGTGCTTTCCATAATTGGGTTTGTTGTTTGGTACATCAGGAGGCCAAGGAAAAATGATTCTGGGCGTGGAGGTTACATTATGCCATCCTCTCTGGGCTCCTCTCCTAAGTCGGAAACATCCCTTATGAAGGTCCATTCCACTGTTCATCAAGACATACATGCCAGTGGCAGTGCAAGTGGCAGTGGCAGTGGCAGTGGTGGAATATACACTCCAAAAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATACGAAGAACTCTTCAAAGCAACAGATGCATTTTCTACTCAGAACCTTTTAGGAGAAGGAGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCTGGAATTCAAAGCTGAAGTTGAGATTATTGGTCGTGTACACCATCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAGCATCAAAGGTTGCTGGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCACCTTCATCTCAAAGGGGATGGCGAGCTCGATCTGGAATGGACAAAGCGCATTAAGATCGCAGCTGGTGCAGCTCGGGGAGTTGCTTATCTTCATGAAGACTGCCACCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGATGAAAATTTTGAAGCTCGGGTTTCTGACTTTGGGCTTGCTAAATTAGCTCTCGACGAACAAACTCATATAACAACCCGTGTTGTGGGAACTTTTGGATACGTTGCCCCTGAATATGCATCGAGTGGAAAGTTAACTGAGAGGTCAGATGTATATTCTTTTGGAGTTGTACTTCTTGAGCTGATTACTGGTCGAAAGGCTGTGGACGCATCCCAACCAATGGGGAATGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCATGCACTCGACAGCCAAGATTTCGAAAAATTGGTGGACCCAAGGCTTGAAAGGAACTACGTTGAGAGTGAAATGTTGGGGATGATAGGAATAGCTGCTGCTTGCGTGCGGCACGCGTCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCCACAGCAGATTTAAGTAATGGAATGAGATTCGGGGAGAGTCAAGCTTTCGACTCCGGTCAACAGTCTGCTGAAATTAGATTTTTCCGGATGCTGGCCTTCGGTAACCAAGATTACAGTTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA 2178 51.19 MAAVSPAPNSSPSPASPSTPSPPPPVASNSPPSTPSLSPPQQSPPPNPSDSATPTSSPPPPSRQPSAASPPPASETPPPSTPALSPPPPRMVPPATPPSTPSNAPPPSTPDPPPPSATPPVSSTPPPPSNPPPNSSPPPAAQPPQSPPQSSKPPEKPPPLPPPPPQANPPDNPAPPPQPTDPPGNSPPTPPSALPPATSPPSPASIPPRNSPPPPRLTPPPGEPSLSSPPPRSSPPPSPPPPPPSHLSPPLPSKPPTLPSGNRTDDGSGPIDGGANSKSNSNGGISSGGVIAIGVVAGIIVLSIIGFVVWYIRRPRKNDSGRGGYIMPSSLGSSPKSETSLMKVHSTVHQDIHASGSASGSGSGSGGIYTPKELGGLGSSRPLFTYEELFKATDAFSTQNLLGEGGFGSVYKGYLPDGRVVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLKGDGELDLEWTKRIKIAAGAARGVAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGNESLVEWARPLLNHALDSQDFEKLVDPRLERNYVESEMLGMIGIAAACVRHASAKRPQMGQVVRAFDSLATADLSNGMRFGESQAFDSGQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34157701 34161449 - CcPI632755_05g025900.1 Cco05g2590 180218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2590 725 MobiDBLite consensus disorder prediction 10 257 - -
Cco05g2590 725 CDD STKc_IRAK 402 674 - -
Cco05g2590 725 SUPERFAMILY Protein kinase-like (PK-like) 379 669 IPR011009 -
Cco05g2590 725 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 253 703 IPR047117 -
Cco05g2590 725 FunFam proline-rich receptor-like protein kinase PERK8 472 685 - -
Cco05g2590 725 Pfam Protein kinase domain 397 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2590 725 Gene3D Transferase(Phosphotransferase) domain 1 472 688 - -
Cco05g2590 725 ProSiteProfiles Protein kinase domain profile. 396 674 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2590 725 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524(InterPro)
Cco05g2590 725 SMART serkin_6 396 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2590 725 CDD TM_EGFR-like 286 318 - -
Cco05g2590 725 Gene3D Phosphorylase Kinase; domain 1 373 471 - -
Cco05g2590 725 FunFam Proline-rich receptor-like protein kinase PERK8 369 471 - -
Cco05g2590 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2590 725 MobiDBLite consensus disorder prediction 1 283 - -
Cco05g2590 725 PRINTS Proline rich extensin signature 36 53 - -
Cco05g2590 725 PRINTS Proline rich extensin signature 61 86 - -
Cco05g2590 725 PRINTS Proline rich extensin signature 18 34 - -
Cco05g2590 725 PRINTS Proline rich extensin signature 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0825 Cco-Chr1:8690719 Cco05g2590 Cco-Chr5:34157701 3.20E-61 dispersed
Cco02g2405 Cco-Chr2:36432191 Cco05g2590 Cco-Chr5:34157701 4.10E-30 dispersed
Cco05g2590 Cco-Chr5:34157701 Cco11g0541 Cco-Chr11:5714802 5.90E-147 dispersed
Cco07g1410 Cco-Chr7:28186903 Cco05g2590 Cco-Chr5:34157701 5.20E-55 dispersed
Cco07g1705 Cco-Chr7:31052254 Cco05g2590 Cco-Chr5:34157701 1.10E-59 dispersed
Cco11g0455 Cco-Chr11:4784682 Cco05g2590 Cco-Chr5:34157701 5.90E-40 dispersed
Cco05g2590 Cco-Chr5:34157701 Cco05g2594 Cco-Chr5:34214658 1.80E-67 proximal
Cco02g0405 Cco-Chr2:3653972 Cco05g2590 Cco-Chr5:34157701 1.30E-53 transposed
Cco04g2114 Cco-Chr4:35006454 Cco05g2590 Cco-Chr5:34157701 3.00E-45 transposed
Cco01g0618 Cco-Chr1:6247603 Cco05g2590 Cco-Chr5:34157701 2.50E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86878 PF00069 Pkinase 4.60E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2590 - - - 0.0