Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2594 ATGGTTCAAATGGGAATTATTAGAATAAAAGTTTCCATTTTCTTCTTCTTCTTCTTCTTCTTATGGAATTCTTCTGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTTCAAGCCTTGATGGCCATTAAAGCTGCTTTGAAAGATCCACATTCTATTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGTTGGAGCATGATTACTTGTTCTTCAGAGAAATTTGTCATTAGCTTAGGAGCTCCAAGTCAGAACTTGTCCGGTAGCCTGTCGCCGAGCATCGGAAATTTGACGAATCTTCAGTCTGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTAGCCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCACTTCTCTTACCCATCTCAAGAGTCTTCAATACTTGAGGCTTAATAACAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGTTGGACCTGTCTTTTAATAATCTTAGTGGCCCAGTGCCTAGATTGCTAGCTAAAACATACAACCTTGCTGGGAATTCTCTCATTTGCTCACCTGGGTCAGAGCATAGCTGCAATGGAACTGCTCCACCTCTTTTATTTGCAGTCAATACACCTCAAAAGCCACAACCTTCTGGGAGATCCAAGGGCCAAAAATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTTTTCTGTTAACTATTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAAATTTTCTTTGATGTTAATGACCAAAGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATCTTCCAGTTCAGAGAGCTTCAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGATTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACAGTTATAGCTGTGAAGAGGTTAAAAGATGGAAATGCAATGAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTGCACCGGAACCTCCTCCGTCTCTATGGGTTGTGTATGACAACCACAGAGAGACTTTTGGTTTACCCCTATATGTCTAACGGCAGTGTTGCATCCCGTCTCAAAGCAAAGCCAGCTCTGAATTGGAGCACCAGGAAAAGAATAGCATTGGGAGCAGCAAGAGGGTTACTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGGGATGTCAAGGCAGCAAATATATTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGATTGGCAAAGCTGTTGGATCACAGAGATTCGCATGTGACCACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCTGAGAAAACTGATGTGTTTGGATATGGAATTCTTCTTCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCCAATCAGAGAGGAGCCATGCTTGATTGGGTCAAGAAAATTCACCAAGAAAAGAAGCTTGAAATACTAGTCGATAAGGATCTGAGGAACAATTACGACAGGATTGAGCTTGAAGAAATGGTTCAAGTAGCTCTTTTATGCACACAGTATGTTCCAACTACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAATGAGTTCTCCTCGTCAGAGCGATACTCTGATCTAACAGATGATTCTTCCCTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA 1881 43.06 MVQMGIIRIKVSIFFFFFFFLWNSSVNGLLTAKGVNYEVQALMAIKAALKDPHSILNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPTSLTHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPVPRLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTPQKPQPSGRSKGQKLALAFGSSLGCVFLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGLCMTTTERLLVYPYMSNGSVASRLKAKPALNWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGYGILLLELITGQRALEFGKAANQRGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYVPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34214658 34217765 + CcPI632755_05g025940.1 Cco05g2594 180222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2594 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 626 - -
Cco05g2594 626 Pfam Protein tyrosine and serine/threonine kinase 309 575 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2594 626 SUPERFAMILY Protein kinase-like (PK-like) 284 576 IPR011009 -
Cco05g2594 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2594 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 35 216 - -
Cco05g2594 626 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515(InterPro)
Cco05g2594 626 Pfam Leucine Rich Repeat 126 148 IPR001611 GO:0005515(InterPro)
Cco05g2594 626 Pfam Leucine Rich Repeat 102 123 IPR001611 GO:0005515(InterPro)
Cco05g2594 626 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Cco05g2594 626 FunFam Somatic embryogenesis receptor-like kinase 1 383 595 - -
Cco05g2594 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Cco05g2594 626 Gene3D Ribonuclease Inhibitor 35 216 IPR032675 -
Cco05g2594 626 SUPERFAMILY L domain-like 37 199 - -
Cco05g2594 626 SMART serkin_6 306 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2594 626 ProSiteProfiles Protein kinase domain profile. 306 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2594 626 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Cco05g2594 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524(InterPro)
Cco05g2594 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0777 Cco-Chr1:8122579 Cco05g2594 Cco-Chr5:34214658 7.30E-231 dispersed
Cco05g2594 Cco-Chr5:34214658 Cco11g0522 Cco-Chr11:5505113 8.40E-227 dispersed
Cco05g2590 Cco-Chr5:34157701 Cco05g2594 Cco-Chr5:34214658 1.80E-67 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86879 PF00069 Pkinase 2.30E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2594 - - - 0.0