Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2595 ATGGGTGAGGTTTTGGGCGTGGATCATTTAAGCGATCTGCCTCAGAGTATTATAGAATGCATTCTCACTAGGTTACCAATTAGAGATGCCATTAGGACAAGTATTTTATCTAGGAGGTGGAGATACAAGTGGACTACCCTTACTCAACTTGTGTTTGATGATGATTGTGTTGCCATGTCCAACGATGGAATATATGAAGACCTTGTATATTTTATCACTCATGTTCTTTTTCTTCATGAAGGTCCAATTCACAAGTTCCATCTTTCTGCTACTTACTTGCAGAATACCCCAGATTTAGATCAGTGGATGCTTTTCCTTTCAAGGAAGGGCATCAGGGAATTGATTATTGAATTGGGAGATGGGGAGTGGTTTAGGGTGCATTCTTGTCTTTTTAACTGTAGCAAATTGACCTTATTGGAGCTGTATCGTTGTGAGTTGGATCCACCTCCTACCTTTAAGGGCTTTTTATGTTTGAAAAGCCTAAAACTTCATCAAGTTCTTATTGCACCTGAAGACATTGAAAGTCTTATTTCTAATTGTCCACTTCTTGAGAGTTTGGCGCTTTCCTACTTCGATAGTCTAGTGCTTAATATCTGTGCTCCCAATCTCAAGTACCTCTATCTTGAAGGCGAGTTTAGAGACATATGTCTTCAAAATACGCCACTCTTGGTTGCAATTTCAGTTGCATTATATATGAATGATGAAACTGAGCCCTTTGGCGATATTTCTGATTGCAATTATGAGAAGTTTCTTGGTGGGGTGCCTTATCTTGAGAAACTTACGGGGCATGTTTATTTCACGAAGTATCTGAGTATAGGTAATAGTGCCGGAACTCTACCGGTTTCGTACATCTATTTAAGGAGTATTGAACTGCACCAAGTCAGTTTTGAAGATATGAACGAGATACTTGTTGTGCTTCGTTTGATTACCAGCTCCCCAAATTTGGAGGAGCTTCAAATTTCGGGCTCCTCAAATCCTGTGGCTGCTTCAGAAGCACCTGACTTGGACTTTTGGGAGAATGAATGTCCCTCGAACTGCACATTTGGTAAACTTAGAGTTGTGAAAGCGACAGATATGTCTGGTGTACCACACGAGATGGAATTTATTAAATATTTGCTTAGGAATTGTCCGGTGCTCGAGACAATGAGTATCAGACCTTGTGTCTATGTTACAGATCGGCGATTGAATATGTTGATTGAATTGTTAAAATTTAGGAGGGCTTCACCTGAAGCAGAAATTTTGTTCATCCAAGAATAG 1257 39.86 MGEVLGVDHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGIYEDLVYFITHVLFLHEGPIHKFHLSATYLQNTPDLDQWMLFLSRKGIRELIIELGDGEWFRVHSCLFNCSKLTLLELYRCELDPPPTFKGFLCLKSLKLHQVLIAPEDIESLISNCPLLESLALSYFDSLVLNICAPNLKYLYLEGEFRDICLQNTPLLVAISVALYMNDETEPFGDISDCNYEKFLGGVPYLEKLTGHVYFTKYLSIGNSAGTLPVSYIYLRSIELHQVSFEDMNEILVVLRLITSSPNLEELQISGSSNPVAASEAPDLDFWENECPSNCTFGKLRVVKATDMSGVPHEMEFIKYLLRNCPVLETMSIRPCVYVTDRRLNMLIELLKFRRASPEAEILFIQE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34218526 34220039 - CcPI632755_05g025950.1 Cco05g2595 180223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2595 418 Pfam FBD 345 384 IPR006566 -
Cco05g2595 418 SMART 9598neu4hmm 345 416 IPR006566 -
Cco05g2595 418 SUPERFAMILY F-box domain 6 56 IPR036047 GO:0005515(InterPro)
Cco05g2595 418 CDD F-box_AtFBL13-like 10 45 IPR053781 -
Cco05g2595 418 SUPERFAMILY RNI-like 114 401 - -
Cco05g2595 418 PANTHER F-BOX PROTEIN-LIKE 6 384 - -
Cco05g2595 418 Pfam F-box domain 10 46 IPR001810 GO:0005515(InterPro)
Cco05g2595 418 Gene3D Ribonuclease Inhibitor 87 407 IPR032675 -
Cco05g2595 418 Gene3D - 1 46 - -
Cco05g2595 418 ProSiteProfiles F-box domain profile. 7 68 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2595 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2595 Cco-Chr5:34218526 Cco07g1429 Cco-Chr7:28387024 1.70E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1027 . . . . . . . . Cmo04g01632 . . Cma18g01071 Car04g01613 . . . Cpe01g01386 . . . . . . . Cla05g02358 Cam05g2527 Cec05g2554 Cco05g2595 Clacu05g2522 Cmu05g2384 Cre05g2499 . . . Cone9ag0506 . . . . . Blo11g00816 Bda07g01512 . Bpe11g01675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007651 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34