Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2597 ATGGCAATCTCAAATAGAGTTTATGAAGTGATGATGATGGTTTGTGTTTTCTTTGTTGTGAGCTACAGCTTGTTTGAAACAGGGGAGCCTCCATTGACATTGGATTACTATGCCAAAACTTGTCCCAATGTGTTGCAAGTTGTGAGGAAAGAAATGGAGTGTGCAGTGCTTTCTGAACCACGTAATGCAGCTTTTGTTGTCCGATTACACTTTCACGACTGCTTTGTTCAGGGATGCGACGGGTCGATTCTGCTGGACGACACTATAACATTAAAGGGAGAAAAAAAGGCTTCCAACAACATACACTCCCTCAAAGGCTTTAGAATCATTGATAGGATAAAGAACAGCCTTGAATCAGAATGTCCTGGGATTGTTTCTTGTGCAGATATACTCACTATTGCAGCCAGGGATGCAGTGATTCTGGTGGGTGGCCCTTACTGGGAGGTTCCTCTTGGAAGAAAAGATTCCACAACTGCAAGTTACGAACTTGCAAACACAAATCTTCCCTCTGCCAATGAGGGCCTTCTCAGCATCATCTCCAAGTTTCTTTATCAAGGTCTCTCTGTCACTGACATGGTAGCTCTATCAGGAGCGCACACGATCGGAATGGCGAGGTGCGAGAATTTCAGAGAAAGGATTTATGGGGATTTCGAAGCGACTTCAGATACTAACAACCCGATTTCGAAGTCGTATATTGAGAAGTTGAAGTCAATTTGCCCCCAAGTTGGGAAAGCAGCAGAGAACAACATAACAGCAATGGACAATGTGACACCAGAGCTGTTTGACAACTCTTATTTCCACATGTTGATGAGAGGAGAAGGGGTTTTGAAATCAGACCAAGAATTGTATTCAAGCCTTTTGGGAATGGAAACCAAGGCATTGGTGAAGAAATATGCTGCTGATCCACTTGCTTTCTTTCAGCAATTCTCTGATTCCATGGTGAAGTTGGGAAATATCACCAATTCTGATAGCTTTTTCACTGGGGAAGTTAGGAAAAATTGCAGACTGCGGCTCTGCTCACTTGTGATCACAAAACTTACTCTCAACCGATCTATTTATCTTGCTGCATTTTTGTGA 1077 42.9 MAISNRVYEVMMMVCVFFVVSYSLFETGEPPLTLDYYAKTCPNVLQVVRKEMECAVLSEPRNAAFVVRLHFHDCFVQGCDGSILLDDTITLKGEKKASNNIHSLKGFRIIDRIKNSLESECPGIVSCADILTIAARDAVILVGGPYWEVPLGRKDSTTASYELANTNLPSANEGLLSIISKFLYQGLSVTDMVALSGAHTIGMARCENFRERIYGDFEATSDTNNPISKSYIEKLKSICPQVGKAAENNITAMDNVTPELFDNSYFHMLMRGEGVLKSDQELYSSLLGMETKALVKKYAADPLAFFQQFSDSMVKLGNITNSDSFFTGEVRKNCRLRLCSLVITKLTLNRSIYLAAFL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34229134 34240530 - CcPI632755_05g025970.1 Cco05g2597 180225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2597 358 Pfam Peroxidase 48 301 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Plant peroxidase signature 268 285 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Plant peroxidase signature 311 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Plant peroxidase signature 252 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 SUPERFAMILY Heme-dependent peroxidases 32 336 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 Gene3D - 36 335 - -
Cco05g2597 358 FunFam Peroxidase 169 316 - -
Cco05g2597 358 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Haem peroxidase superfamily signature 254 269 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Cco05g2597 358 CDD secretory_peroxidase 32 335 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco05g2597 358 Gene3D Peroxidase, domain 2 169 316 - -
Cco05g2597 358 ProSiteProfiles Plant heme peroxidase family profile. 31 338 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 FunFam Peroxidase 35 176 - -
Cco05g2597 358 PANTHER PEROXIDASE 72-RELATED 12 335 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g2597 358 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2597 Cco-Chr5:34229134 Cco09g1278 Cco-Chr9:13885720 2.70E-76 dispersed
Cco05g2597 Cco-Chr5:34229134 Cco11g0594 Cco-Chr11:6349590 9.20E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2597 K00430 - csv:101216779 604.364