Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2602 ATGGCGTCTTCTCCGACTCCCATCTCTCCACTATCTTTTCCCAATCCAATACCAAGATCAAGATCAAAACCAAAACCAATACCAAACAAACCGCCGTCTTCATTGCCTCCTGCCTTGAACCCCACCCCCAAATCTCCGCCCAAGGAACTTTACTTCAACCGCGATGGCTCTACCTTTAAAAAACTTCAGGTCGGGGTTAATCTGGTGGCGGATCTGGTGGGTGTTACATTAGGGCCGAAGGGAAGGAATGTGGTACTTCAGAACAAATATGGACCGCCCAAGATCGTCAACGACGGTGAAACTGTCCTGAAAGAGATTGAACTGGAAGACCCTTTAGAGAATGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCAAAGACAAATGACCTTGCCGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTGATTGCCGAGGGTATGAAGGTTATTTCGTCTGGCATGAATCCTGTTCAAATTGCACGTGGGATTGAGAAGACTGCAAAAGCACTAGTTTCTGAGCTGAAATTGATGTCAAGAGAGGTTGAAGATCATGAGATAGCACATGTGGCCGCAGTTAGCGCAGGGAATGATTATGCTGTAGGAAATTTGATTTCAGATGCCTTACGTCAAGTTGGAAGGAAGGGAGTCGTCCAAATTGAAAAAGGGAAGAGTATCGTTAACAGTCTGCAAATTGTTGAAGGGATGCAATTTGACCGTGGATATTTATCACCATACTTCGTTACTGATAGAAAGAAGATGGTAGTAGAATTTCATGATTGCAAGTTACTGTTGGTCGACAAAAAAATCTCAGATCCAAAGGAGATGTTTAAAATATTGGACAGTGCTGTGAAAGAGAAATACCCAATTGTGATATTGGCAGAGGGCATTGAGCAGGAAGCTCTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTATCAAGGCTCCTGCCTTTGGCGAGCGCAAGAGTCACTACTTAGATGACATAGCCACCTTAACTGGAGCTACTGTGGTTAGAGAAGATAGTGGATTCACTTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCTGCTAGTAAGGTTGTTATATCAAAACATTCCACACTGATAGTTACAGATGGGAATACTCGGGAAGCGGTTCGGAAAAGGGTCTTACAAATTCAAAAGCTTATGGAGAATACTGAGGAAAATTTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGGCGAATTGCAATACTTCAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGACGCTTTGAATGCATCAAAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACGAAGGTGGATGCTATAAAGAAAGTCCTGGAAAATGACGAACAGATGATTGGAGCCGAAATTTTCAAAAGGGCTTTGAGTTATCCTATAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAATGTTGTAACACATAAGGTTCTAATCAACAATGATATGGATTATGGATATAATGCGGCCACAGACCGTTACGAGGATCTAATGAAAGCTGGAATCTTGGACCCTTCAAAGGTTGTTAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTAGTTGATATGAAGGAACCAGAACCCATACCAAGAAGAACACCGATGCCAATCTCAGGCGGCATCAGACAAATGGGTCTCTAG 1788 43.4 MASSPTPISPLSFPNPIPRSRSKPKPIPNKPPSSLPPALNPTPKSPPKELYFNRDGSTFKKLQVGVNLVADLVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMNPVQIARGIEKTAKALVSELKLMSREVEDHEIAHVAAVSAGNDYAVGNLISDALRQVGRKGVVQIEKGKSIVNSLQIVEGMQFDRGYLSPYFVTDRKKMVVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDSGFTLEKTGKEVLGSASKVVISKHSTLIVTDGNTREAVRKRVLQIQKLMENTEENFPKKILNERIARLSGRIAILQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKKVLENDEQMIGAEIFKRALSYPIKLIARNAGVNGNVVTHKVLINNDMDYGYNAATDRYEDLMKAGILDPSKVVRCCLEHAASVAKTFLTSDAVVVDMKEPEPIPRRTPMPISGGIRQMGL 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34265881 34270686 + CcPI632755_05g026020.1 Cco05g2602 180230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2602 595 Gene3D - 60 570 IPR027413 -
Cco05g2602 595 Gene3D GroEL 237 418 IPR027409 -
Cco05g2602 595 MobiDBLite consensus disorder prediction 9 44 - -
Cco05g2602 595 NCBIfam chaperonin GroEL 48 574 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cco05g2602 595 Coils Coil 384 404 - -
Cco05g2602 595 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 46 575 IPR001844 GO:0006457(PANTHER)|GO:0009570(PANTHER)|GO:0042026(InterPro)|GO:0140662(InterPro)
Cco05g2602 595 FunFam 60 kDa chaperonin 237 418 - -
Cco05g2602 595 PRINTS 60kDa chaperonin signature 443 464 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cco05g2602 595 PRINTS 60kDa chaperonin signature 129 156 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cco05g2602 595 PRINTS 60kDa chaperonin signature 313 336 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cco05g2602 595 PRINTS 60kDa chaperonin signature 395 420 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cco05g2602 595 PRINTS 60kDa chaperonin signature 73 99 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cco05g2602 595 Pfam TCP-1/cpn60 chaperonin family 69 572 IPR002423 GO:0005524(InterPro)
Cco05g2602 595 Gene3D - 183 455 IPR027410 -
Cco05g2602 595 MobiDBLite consensus disorder prediction 1 49 - -
Cco05g2602 595 SUPERFAMILY GroEL equatorial domain-like 56 569 IPR027413 -
Cco05g2602 595 SUPERFAMILY GroEL-intermediate domain like 187 250 IPR027410 -
Cco05g2602 595 CDD GroEL 48 571 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cco05g2602 595 SUPERFAMILY GroEL apical domain-like 231 421 IPR027409 -
Cco05g2602 595 ProSitePatterns Chaperonins cpn60 signature. 450 461 IPR018370 GO:0005524(InterPro)|GO:0006457(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2602 K04077 - - csv:101209342 1011.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1515 Cco-Chr3:29727652 Cco05g2602 Cco-Chr5:34265881 4.50E-218 dispersed
Cco05g2602 Cco-Chr5:34265881 Cco06g0779 Cco-Chr6:8936746 6.30E-123 dispersed
Cco05g2602 Cco-Chr5:34265881 Cco09g0062 Cco-Chr9:543186 5.00E-112 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67