Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2603 ATGAAAGCTGACAGTCTAAGCACACATAAGCTTGCTGTTCTGCACCCAGTGAGACCTTTCATTAGAGGTTCTTTCCCGCGCTTAAAGCTCTTCTCTTCTTTCGCTTTCATTCCCAAACGTTCCCCTCGACCAGGTTCCTTCCGCTTGCCTCAGAATTCCTGCTTCAAGGGTGTGCGTTATGACTGTCCAGTAATGGGTGCAACGGAATTATCTGATCTCGAGGATGTGGATTTGTTGGTGGAAATGTGCATTACGCATACACTACCACCGGCTCTGACGCTAAAGCAGGGGCTGGAGAGTATTAGTGAGGCCATTGAAAAGTTGAAATTAGAATCTCCACGTTCTTCTCACGGAGTTTTCAGGTTTCAGGTGGCTGTTCCCCCGAGTACAAGAGCTCTTTTGTGGTTCTGTTGTCAACCAGAGTCATCTGAAGTGTATCCTATATTTTTCCTTTCCAATGAGAAGGACGCCACAATTAAGTCACTGTACTTGAATGATACCCGTGGTGTTTTTGGAATTGGTACTGCAATTTACTTTGCAAGCTTGGCTTCCACTTCATTGAAACGAAGTACATTGAAAAGGTTTCTCATGAATGATTCAGCTCCTATTATGGCTTATGGTTTTGTTAATGCTAATACCGGGGAGACATCTTCGCTGAAGAATGAGGCTGGTCATTCTTTCTTTTGTGTTCCCCAAATTGAGTTGAGTGAGTACGAGGGCATTTCTGTTCTCTCTGCAACACTTGCATGGGGTGAATCTTTCCCTTGTACATTTGAGGAAGCTCTCCATTCTTTGGGCTCATCTATCTACCAGATCAGCACTAATTTTCCATCTATTGAAAACTGCCGGTACAAATATATAAGATCTTCATTAACAGCTTCAAAATTTGTGGATGGAACAAATCAGATGGCATACATGAAAGTGCTTTCTATTGCTGGTGAAAGTTTCAGGAATGGCATCATGGAAATGGAGTCTGCACTCTCCCATCAATTCTGCATTAGGGTTTCACCAAGTGTTGCCGTTGCATGCAATATGTTGGATCATATCAACAAAACTGGTAACTCAGAGCAAGAGCATGCCAACGTTAATGCTCTCTGGGCATCGCTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACGTATTTTTGCATAGCTCCTGGATCAAGATCATCCCCTCTTGCCATAGCTGCTGCAAGTCATCCCCTTATGACATGTATTGCCTGCTTTGATGAACGCTCTCTTGCTTTTCATGCTATTGGGTATGCCAAAGGATCTCATAGCCCAGCAGTTGTAATCACATCGTCAGGCACTGCTGTTTCAAATCTTCTTCCTGCTGTTGTTGAAGCTAGTCAAGATTTTCTTCCTCTTTTATTGCTTACAGCTGACCGTCCCCCGGAGCTACAGGATGCAGGAGCAAATCAAGCAATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAATCTTCCTGCTCCAACTGATCAAATTCCCGCCAGAATGGTACTTACCACTCTCGATTCTGCTGTATATTGGGCAACCTCTTCACCCTGTGGCCCCGTTCACATAAACTGTCCATTTAGAGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTGCTTAAATGGATTACACATTTGGTTATCAAGCACTGAAGTTTTTACCAAATATTTTCGACTTGAAGCGTCTCCAATGTCTATTGATTCTTTTGGTCAAATGGCAGAGGTCTTGAAAGTAATCCATGGAGCCAGGAAGGGAATTCTACTTCTTGGATCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTATTGGCCAAACATATTTCATGGCCTATAGTGGCTGATGTATTGTCTGGTTTACGATTAAGAAAGAGTTTGTCTGCATTCCTAGAAATGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCACACTTTGCTTTCTGAATCGGTGAGAAAATGGCTAAATTTTGACGTGATTATTCAGATTGGAAGCAGGGTAACAAGCAAACGTGTTTCAAAGATGCTTGAGGACTGCAGTCCCTGTTCATACATCATGGTTGATAAGCATCCAGGTCGTCATGATCCATCACATATTGTAACCCATAGAATTCAAAGCACCGTCTTAGAATTTGTTGGTTGTTTACTTAAAGCTGATTTTCCTCTCAATAGGAACAAGTGGACTGCTACTTTACGAGCATTGAATTTGATGGTTGAATGGGAAATACAATTTCAAATTTCTGCTAACTACTCTCTATCTGAGCCACAAGTTGCTCAGGTAATCTCAGAAGCACTTCCATTTGATTCTGTTTTGTTCCTGGGGAACAGCATGCCAATTCGTGATGTAGATATGTATGCATATGGCTGGTCAAAATGCAACGACAGTGTAGCGGCTAGACCATTAAACTTACGACTGCCATTTTACTGGATATTGACTTCTGGAAATAGGGGAGCCAGTGGTATTGACGGACTTCTTAGCACAGCAGTTGGTTTTTCTGTTGGATGCAACAAACGAGTGCTTTGTGTAGTTGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTAGCAATTTTGAACCAGAGGATGACGAGGAAACCTGTGACTGTAGTTGTAATCAATAATAATGGTGGGGCAATCTTCAGTCTCCTTCCTATCAAGGACAAAGTAGAGGCAGCAATACTAGACCAATTCTTCCACACCTCTCACAAGGTTTCACTCCGAAGCCTATGCGTGGCACATGGCTTGAAGCATTTACATGTACGGACAAAGATGGAACTTCAAGATGCTTTATTTATGTCTCATCATGAAGAAAATGATTGCATAATCGAGGTCGAAAGTTCCATTGATGCCAATACTGCCTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGAGCATGGTTTACGCATCTTTTCAAGGCTCTATTCTGAAGAATCTGTTTCACCTGGACTCTTCCTCTGCAAGATAAGTAGAATGGAATGCACATTGTTCAGAATCCCATTATGTGCTCCACCTACAACTTCATCTGGTTCTGTTGATCAAGTCAGTCGGAAGTTCTTCAGAGAAGGTTTTATTTTGTCTTTGTTTCTGGAGGACGGGAGTCTTGGCCTTGGTGAGGTTTCACCCCTTGACATCCACAGAGAGAACCTACTAGATGTGGAAGAGCAACTTAAGTGTCTCATTCATATATTAAAGGGAGCCGAGATCAGCAGCTCCATTCCTCTACTAAGGGGCTCATTTTCATCTTGGATTTGCCATGAACTGGGATTACCGCCAAGTTCAATCTATCCAAGCGTTAGATGTGGTTTGGAAATGGCTGTTCTCAATGCCATAGCAGGGAGAAAAGGTTGCAGCTTGTTGGATGTACTCCAGCATCGGTTAGATGAAGAAAAGAACTTGACAACTTCGTCAAAAATTCACATTTGTGGGCTGTTGGATTCTGGTGGAACTCCATCTGAGGTTGCTCGTGTTGCTAAGACACTGGTCGAAGAAGGATTTCCTGCTATCAAGTTAAAGGTAGCCCGACAACGGAATGTCATGTATGATGCTGCAGTTGTACAGGAAGTAAGGAAAAAGCTTGGAAACCAAATTGAACTCCGCGTTGATGCCAATCGGAACTGGAGCTATGAAGAAGCTATTTTATTTAGCTCTTTGGTGAAGGACTGTGGCCTGCAATATATTGAGGAACCAGTCATGGATGAAGATGCTATTATTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTGTCGATCATATTCAAGACAATCCCGTGAAAGAACTAGCGAAGTATGCTCATCCAGGAATTGTTGCTATAGTTATAAAACCAAGTGTCATTGGCGGATTTGAAAATGCAGCATTAGTAGCGAGGTGGGCACAACAACATGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCTGGATATATACACTTATCCTGTTATCTGGATCTTCAGAATGCAGAAGTAAGAAAACTGATGAATATTCAACCAGCCCCATCTATAGCCCACGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTAACTGTCAATCCTCTCAGAATTCGCCGTGACCCTTATAGTGGCATTATTGAAGCATCTGTTGCTGAGGCTAATCGACTTCTAAATAGTTTTGAAATCAACCAGAAGTTTGTTTGTAGAAAATTTACTGAAGAGCAAGTTCGTATGTTCAAATTAAGTGTAGACTTAAAGGGGTTCTCTTATTCAATAAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAATGTGCTCTTCTTTCTTCATGGATTTCTTGGAACTGGTGAAGACTGGATTACAATCATGAAAGGCGTCTCAGGTTCGGCGAGATGCATTTCTCTTGACCTTCCTGGTCACGGGGAATCAACGACCCAAAAGAATGATTGTGATGTTCATGGTATGGAGGAACCAAGTTTTTCAATGGAGGTTGTTGCTGATCTACTGTATAAGTTGATTCATCATCTTGCTCCTGGTAAAGTTATAGTTAACCTTGTAGGGTATTCAATGGGGGCTAGGATTGCAATGTACATGGCCCTGAGATTTGGTGATAAGATTGGAAGAGCTGTTATAATATCTGGAAGCCCCGGATTAAAAGACAAGATAGCAAGAAGAATCCGCAGAGTTAAAGATGATTCTAGAGCACGAATCCTTAAGGTCTATGGCTTACAAAGCTTTCTTGAGGCGTGGTATTGTGGGGAACTATGGAAAAGTTTAAGAGAACATCCACATTATAGTCAAATTATTGCCAGCCGATTGAAGCATGATGATGTGCAGCATCTTGCAAAAGCTCTATCTGATTTAAGCATTGGAAGGCAGCCGCAATTGTGGGATGAATTAAAATACTGTAAAACACCACTTTCATTCATTGTTGGGGAGAAGGATACAAAATTCAAGACAATTGCACAGAAAATTCTATCTCAAATTGATATGGACAAGAAGATCAAAGATGAACCAATTGTTGACCTCCATGAAATAGTTGAGATCCCGGACTCAGGACATGCTGTCCATCTGGAGAATCCTCTTGCTGTTATCAATGCATTAAGTAGATTTCTAATAAGGAGTAGAACACAGTGCTCTTACAATTCGGATTTCCCAGGCCAAGTCGCAATTACGCATGAGACCCGCCTTCTGTAA 5202 41.77 MKADSLSTHKLAVLHPVRPFIRGSFPRLKLFSSFAFIPKRSPRPGSFRLPQNSCFKGVRYDCPVMGATELSDLEDVDLLVEMCITHTLPPALTLKQGLESISEAIEKLKLESPRSSHGVFRFQVAVPPSTRALLWFCCQPESSEVYPIFFLSNEKDATIKSLYLNDTRGVFGIGTAIYFASLASTSLKRSTLKRFLMNDSAPIMAYGFVNANTGETSSLKNEAGHSFFCVPQIELSEYEGISVLSATLAWGESFPCTFEEALHSLGSSIYQISTNFPSIENCRYKYIRSSLTASKFVDGTNQMAYMKVLSIAGESFRNGIMEMESALSHQFCIRVSPSVAVACNMLDHINKTGNSEQEHANVNALWASLIVEECSRLGLTYFCIAPGSRSSPLAIAAASHPLMTCIACFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLLPAVVEASQDFLPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPAPTDQIPARMVLTTLDSAVYWATSSPCGPVHINCPFREPLENSPSPWNLSCLNGLHIWLSSTEVFTKYFRLEASPMSIDSFGQMAEVLKVIHGARKGILLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSAFLEMENNFFFVDHLDHTLLSESVRKWLNFDVIIQIGSRVTSKRVSKMLEDCSPCSYIMVDKHPGRHDPSHIVTHRIQSTVLEFVGCLLKADFPLNRNKWTATLRALNLMVEWEIQFQISANYSLSEPQVAQVISEALPFDSVLFLGNSMPIRDVDMYAYGWSKCNDSVAARPLNLRLPFYWILTSGNRGASGIDGLLSTAVGFSVGCNKRVLCVVGDVSFLHDTNGLAILNQRMTRKPVTVVVINNNGGAIFSLLPIKDKVEAAILDQFFHTSHKVSLRSLCVAHGLKHLHVRTKMELQDALFMSHHEENDCIIEVESSIDANTAFHSVLRKFTCQAVEHGLRIFSRLYSEESVSPGLFLCKISRMECTLFRIPLCAPPTTSSGSVDQVSRKFFREGFILSLFLEDGSLGLGEVSPLDIHRENLLDVEEQLKCLIHILKGAEISSSIPLLRGSFSSWICHELGLPPSSIYPSVRCGLEMAVLNAIAGRKGCSLLDVLQHRLDEEKNLTTSSKIHICGLLDSGGTPSEVARVAKTLVEEGFPAIKLKVARQRNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEAILFSSLVKDCGLQYIEEPVMDEDAIIKFCEESGLPVALDETVDHIQDNPVKELAKYAHPGIVAIVIKPSVIGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYIHLSCYLDLQNAEVRKLMNIQPAPSIAHGLGTYRWLEEDVTVNPLRIRRDPYSGIIEASVAEANRLLNSFEINQKFVCRKFTEEQVRMFKLSVDLKGFSYSIKVLEVGQRTNDNVLFFLHGFLGTGEDWITIMKGVSGSARCISLDLPGHGESTTQKNDCDVHGMEEPSFSMEVVADLLYKLIHHLAPGKVIVNLVGYSMGARIAMYMALRFGDKIGRAVIISGSPGLKDKIARRIRRVKDDSRARILKVYGLQSFLEAWYCGELWKSLREHPHYSQIIASRLKHDDVQHLAKALSDLSIGRQPQLWDELKYCKTPLSFIVGEKDTKFKTIAQKILSQIDMDKKIKDEPIVDLHEIVEIPDSGHAVHLENPLAVINALSRFLIRSRTQCSYNSDFPGQVAITHETRLL 1733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34273725 34290703 + CcPI632755_05g026030.1 Cco05g2603 180231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2603 1733 Pfam Enolase C-terminal domain-like 1161 1333 IPR029065 -
Cco05g2603 1733 SUPERFAMILY Enolase C-terminal domain-like 1154 1374 IPR036849 -
Cco05g2603 1733 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 360 540 IPR029061 -
Cco05g2603 1733 SUPERFAMILY Enolase N-terminal domain-like 995 1130 IPR029017 -
Cco05g2603 1733 Gene3D - 358 554 - -
Cco05g2603 1733 CDD TPP_PYR_MenD 368 529 - -
Cco05g2603 1733 Pfam alpha/beta hydrolase fold 1440 1551 IPR000073 -
Cco05g2603 1733 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1206 1237 IPR018110 GO:0009063(InterPro)
Cco05g2603 1733 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 756 949 IPR029061 -
Cco05g2603 1733 SUPERFAMILY DHS-like NAD/FAD-binding domain 522 739 IPR029035 -
Cco05g2603 1733 CDD TPP_SHCHC_synthase 757 952 - -
Cco05g2603 1733 Gene3D - 573 749 - -
Cco05g2603 1733 NCBIfam 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 366 837 IPR004433 GO:0009234(InterPro)|GO:0030976(InterPro)|GO:0070204(InterPro)
Cco05g2603 1733 SFLD Enolase 998 1373 - -
Cco05g2603 1733 SFLD o-succinylbenzoate synthase 998 1373 - -
Cco05g2603 1733 SMART MR_MLE_2 1158 1254 IPR013342 -
Cco05g2603 1733 NCBIfam o-succinylbenzoate synthase 1027 1338 - -
Cco05g2603 1733 Gene3D alpha/beta hydrolase 1431 1707 IPR029058 -
Cco05g2603 1733 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 802 936 IPR011766 GO:0003824(InterPro)|GO:0030976(InterPro)
Cco05g2603 1733 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 103 1711 - -
Cco05g2603 1733 SUPERFAMILY alpha/beta-Hydrolases 1427 1707 IPR029058 -
Cco05g2603 1733 Gene3D - 997 1138 IPR029017 -
Cco05g2603 1733 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 360 967 IPR004433 GO:0009234(InterPro)|GO:0030976(InterPro)|GO:0070204(InterPro)
Cco05g2603 1733 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 368 479 IPR012001 GO:0030976(InterPro)
Cco05g2603 1733 Gene3D - 1139 1378 IPR036849 -
Cco05g2603 1733 Gene3D - 756 966 - -
Cco05g2603 1733 Pfam Middle domain of thiamine pyrophosphate 546 778 IPR032264 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2603 K14759 - - csv:101217012 3147.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1016 . . . . . . . . Cmo04g01638 . . . Car04g01619 . . . Cpe01g01391 Bhi07g01424 . . . . . . Cla05g02365 Cam05g2535 Cec05g2564 Cco05g2603 Clacu05g2531 Cmu05g2391 Cre05g2507 . . . . Lsi04g00326 . Chy10g01084 Cme10g00326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37