Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2606 ATGGGGTTATGGAGTACTGAAAGTGGTACATTATCTGAAATGGGGAATGTGGATGTAGTTAGGAACCAGGATATGGTTGGTTGTTCTTCTTCCACTGCTCCTGTGGTAGAGTCATTTAGCTCTACTATCTGGGAACAAGCAGCTAATTGTCAAAACTTGGGAATTTGCAACATTCAAGGCCATAACAACTCTACTACTTCAAATACCATAGCAATGAGTAAGGCCAGTGGCTGTCCAGTTTCTTTGAGCAGTGACATTGATAGAACACTTGACATCAGCTGGAACCTGTCACATAATATGTTAAAAGGGGGAGTTTACCTACCTAATTTTCCCAGTGTGATCCCGCCAAGCTTATCTCAACTTCCAGCTGATTCTTCATTTATTGAGCGTGCAGCCAGGTTTTCCTGCTTTAGTGGTGGAAATTTTGGTGATATTGTTGGCCATTTCAGCATTCCTGAGCCTATTGGTGTTTTTTCCAGAGGCATGGGAGTTATACCTGAGAGATGGGATGAGATTCCACGAAATGGGTTAGGTTCGGTATCCGGAACTGGAGGACAATCTCAAAGAAACATGGTTAACAGTGAATCTTCAAAGCCTCTTTCTTTGACTAATGAACATGGAGCTACTGAAAGGGGATCACCTAAAAATGGAAGCCCTTTGAAATGGGATGATCGTGGTAAACATGCTGTTGATGGTTCTGCTAATGAATCTGATGAAGCTGAGTTTAGCGGTCATGATGGTTCGGGTGAGCCATGTACGTTAGAGGCCCCAGGTAAGGAACTTTCTGCCAAGGGCCTCGGCTCAAGGAAAAGGAAAAGAAGTGGACAGAAGACTGAACTCGATCAAGCCAATGGACCTCTGCAACAAACTACGGTTTCAGCTAAGGACGATGCTGAAACTCAGCGAAAAGGAGATCAAAATCCGAGTTCAACTGCAAACAAGTGTACAGGAAAACATAATAAACAGGTACCTCAACCTTCTGATCCACCAAAGGAAGAGTATATTCATGTTAGAGCTCGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACTGGAAAGGCGGTGATGCTAGATGAAATCATTAACTATGTCCAATCACTGCAGCGACAAGTCGAGTTTTTATCAATGAAACTCGCTACCGTGAATCCAAGGTTGGATATTAACATTGATGGACTCATAGCCAAAGATATTCTTCAATCACGAGTTGGTCCATCGTCGACATTGGGATTTTCTTCACATATGCCCATTGCTTGTCCCCCACCTCATATTTCTCATCATGGACATATCCCAAGCAATTTTCCTGCCATAGGGAGCTCTGAGATGTTAAGAAGCACAATGAATTCCCAGATGACTACAAGGTCGGGTGGATTTAAGGATCCTACTCAGATAAAGAATGTGTGGGATGGTGAACTCCAAAACATTGTGCAGATGAGCTTTGGGATGTCCACTACCCCCAATTGTTTAGAAATTGAAGAAATCAGTGACCTGGTAGAGAAACTAGTTTCTGATCTCGTTAGTTCATATTATAGGAGAGTTGTTGCCTTAGTCGATGTACAGGGGTCGAGGAATCGATATCTGAAAACCGAGGAACCGCTGGAGGTTTAG 1683 43.55 MGLWSTESGTLSEMGNVDVVRNQDMVGCSSSTAPVVESFSSTIWEQAANCQNLGICNIQGHNNSTTSNTIAMSKASGCPVSLSSDIDRTLDISWNLSHNMLKGGVYLPNFPSVIPPSLSQLPADSSFIERAARFSCFSGGNFGDIVGHFSIPEPIGVFSRGMGVIPERWDEIPRNGLGSVSGTGGQSQRNMVNSESSKPLSLTNEHGATERGSPKNGSPLKWDDRGKHAVDGSANESDEAEFSGHDGSGEPCTLEAPGKELSAKGLGSRKRKRSGQKTELDQANGPLQQTTVSAKDDAETQRKGDQNPSSTANKCTGKHNKQVPQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGLIAKDILQSRVGPSSTLGFSSHMPIACPPPHISHHGHIPSNFPAIGSSEMLRSTMNSQMTTRSGGFKDPTQIKNVWDGELQNIVQMSFGMSTTPNCLEIEEISDLVEKLVSDLVSSYYRRVVALVDVQGSRNRYLKTEEPLEV 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34317066 34320696 + CcPI632755_05g026060.1 Cco05g2606 180234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2606 560 MobiDBLite consensus disorder prediction 175 331 - -
Cco05g2606 560 CDD bHLH_AtBPE_like 333 418 - -
Cco05g2606 560 MobiDBLite consensus disorder prediction 264 278 - -
Cco05g2606 560 MobiDBLite consensus disorder prediction 304 323 - -
Cco05g2606 560 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 118 505 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco05g2606 560 MobiDBLite consensus disorder prediction 179 211 - -
Cco05g2606 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 411 IPR036638 GO:0046983(InterPro)
Cco05g2606 560 MobiDBLite consensus disorder prediction 217 245 - -
Cco05g2606 560 FunFam Basic helix-loop-helix transcription factor 340 412 - -
Cco05g2606 560 Pfam Helix-loop-helix DNA-binding domain 346 394 IPR011598 GO:0046983(InterPro)
Cco05g2606 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983(InterPro)
Cco05g2606 560 MobiDBLite consensus disorder prediction 279 295 - -
Cco05g2606 560 Gene3D - 340 413 IPR036638 GO:0046983(InterPro)
Cco05g2606 560 SMART finulus 349 399 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0767 Cco-Chr1:8056607 Cco05g2606 Cco-Chr5:34317066 3.70E-106 dispersed
Cco05g2606 Cco-Chr5:34317066 Cco05g2919 Cco-Chr5:36719300 4.20E-44 dispersed
Cco05g2606 Cco-Chr5:34317066 Cco02g0529 Cco-Chr2:4951182 5.90E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59385 PF00010 HLH 6.30E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2606 - - - 0.0