Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2608 ATGTCCAGAGCAATGACGACAAAGCCAATACTGTCTTTGGCTGAACTTATCTTAGTTTCCATCTCAGAAATTGTAAATTCTACAGAGTACACTGAAGAAGAACATGGGAAATTTATTGAGATTGGAAGCTACTTTTATCGAGCAGCTCTGGCCGTTGTGGAGTTGCAGGGGATAGATCCAATGCCATTTGATGAAATCCTCCAATCTCTAAACAAAAGCATCAATCATGCAAAGGAACTAGTGGAAAAGTTCCTAAATGGCATTCAACTAGTCTCAGATTCTGATCCAATTACCATTATAAATCCACTAGAAGAGGTGATAAAGGAAATGGGTGAATGCTTGAACAAGATAGCGACCGCTACATTCGAGGAGCAGAATTATGTGAAAATGGCAATTCTATCACTTTCAGATGAGATGAAGAATATATCCACTAAAATTGTCCAAGCTCAAGCCATGATGAATATGCAAGAGATTAAAACTTCTTTGAAGGAACAATCAGAAAAAGAGCTAGAAGTTATAGAGAAAGATCTATACCCCATTGATATGGACTGGGACACAAACAATACACAATCCCCAGTTGTATCGGAGTTGAGCGAAGGTGTTACAAATACAAATGGAAGAGGAAACCAAATAAAGTATAGCAAGGTTACATCAGCCATGGCAGAACTACCCTCAGTGACCCATTACATAGAACCTCTCTTTGAGACCTTCTTCTGTCCATTGACAAAGAATATCATGGACGATCCAGTTAGCTTAGAAACGGGAGTGTCATACGAAAGACAAGCAATTGTTGAGTGGCTTAAAGAGTTCGAAGAATCCGAGGAAATTTTCTGCCCAGTCACAGGGCAAAAGCTTGTGTCCAAAGCTTTTAATTCCAACAGAGCTCTGAAGTCTACAATAGACAAATGGAAGGAACGCAATGAGATAGCAACAATCAAAGTCGCCCGGGCTGCTCTGTCTTTAGCCAGTTCAGATGAAATGGTGCTTGAGGCAATCAAAGACCTGTCGAGTATCAGCAAAGGGAAGCAGTTCAACATAGAACGGATCTTCAATTTTGACATGTTACCTTTGCTCGCTAACTTTTTGGAGTACAGAGACAGAGACGTTAGATATGCAGTTCTAGAGCTATTGCATCAAATGGCAGAAATCAATGAAGACAACAAGATAATGATCTGTAACCAATTGGACGTATCAAGAATAATCAATCTATTATCAAGTAGTCACAGGTCCATTCGGGATAGAGCCTTGCTTCTGTTGTTTGAGCTTTCAAGATCCCAGTCATTGTCAGATCCAATTGGTTCAGTAACTGGGGGGATTCCAATGCTGATCATCATGAAGGACAACAGGTCCGATGAATTTGCTTCAGAAAAGGCAGATGAAACCTTGAGAAACTTAGAGAAATCTCCAACGAATATCAAGCATATGGCAGAAGGTGGACTCATGGAACCCCTCATAAGGCATCTTACTGAAGGTAGTGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTCATTAGACATGACTGTATGGCATATGTAGCTGAGAGGGCCTCTTCAGTTCTTGTCAAGATGGTGCACGAAGGAGATACATTCATCCGCAAGGCAGCATTTAAAGCTCTATTGCAAATTTCATCTCACAGGCCTAATGGTAAAACACTTGCAAAAGCTGGAGCTGTACAAGTCATGGCTGAAGAGATGTTCACTCGTACCATTTGTGATGAACTTAATGATCCAAAAGCAGATGCAACTCAAATACTGGCAAATATATGCGAATCCTGTCTTGATCTTGGGACACTTCAAGTTAACGCTCATGGCTACACTATGAGTTCAGATTATGTAGTCTACAACATTATCAACTTGCTCAAGAACTCAACTCCAGATGAATCTAAATTTAGCACGAGTCTCATCAGAATACTATTATGCTTGACAAAATCTCCAAAACCAATGGACACCCTTGTTTCGGGTGTAAAAAACACTGAAGCATGTGATAACCTCATATATTTCATCAGTAGTCCAGATGAAGAACTTAGAGCTGCAGCAATAAAACTGCTCATATCGCTGTCCCCTTACATGGGCTTCCCAATGGCAGAAAGACTCTGCAAAGCCAGTGACCAAGTGGAGAACCTTACCAGTAGCATTACCTTGACAAACCAAATCACAGAGAAGCAGGCACTTTCAGCAACATTCTTAGCAAAACTACCTCACGAGAGCCTAGCTCTCAACACCATGATTGTAAACAAGAATATCGTGCCCAAGCTCCTGCAGACAATCATTCAAATACAAAGCAGTGGAACAGGAATGAGCAGGTATGCAAGTGCTTTACTAGAAGGTTCGGTGGGAATTCTTGTCAGATTCACAGCAACACTTTATGACCCGCAAATGCTGTTTCTGGCAAAAATTCACAATTTTACATCAGTATTAACTAACCTGCTCACTCAAACATCAAGTGATGAAGTTCAAAAGCTATCCGCCATTGGGTTGGAGAAACTATCATCAGCATCCACGAGTCTATCCAAGCCCCTGAACATTAAAGGCAACAAGATCATGAAATTTCTCCACTTACCCAAGCTTCTATCACTAGGTCCATCAAAGAAGGGTTACTTACGAGTATGCCCAGTTCATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCGAAAGCAATTGAAAAGCTGTTGACGTGTTTAGACAATGAGAACGAAGAGGTAGTTGAGGCAGCTTTGTCCGCCATTTGTACGCTTGTGGATGAGAAAGTGGATCTGGACAGTAGTGTGAGCCTGCTGAACGAATTTGACACAATAAGGCATGTCCTGAATGTGGTGAGAATGCATAAGCAAGAATCTGTGTGGCATAAATCATTTTGGTTGATCGAGAAGTTCTTGATCAAGGGTGGGGAAGAGTCACTTTCCAATATATCACAGGACAGATCGTTGCCTGCAATATTGGCTACTGCTTCCCATCAAGGGGACAGCGAGACGAGGCGAATAGCAGAAAAGATATTGACCCATTTGAATATGGGTAGTGGAAACGCCCCACCTATATATGACCTCTGTTTGAAGTTGAATAAATCTCGATGTCGACTTTTTCTCTATATTCAGGAGTGGCTAGGTGAAAGATCAAAGGTGAGAACAAAACCTATATTATCTAGAGTGGTTTCAGCAGCAGGAATCATTGGTCTTCCTTTGAAGAAAATGGCTTCTTTCTCTGTGGAGGATTTTGTGGGAAATGGGGTTCTTAAGGATCTGCTTCCCACTTTGCTGGATGAAGGCTGGGATGATGTACCAACCTTGAAGGTCATGAATTCCGAGGATATGGATGCAATAAATATGACACAACAACAAAAGGAAGCAATGGAGATAAGAACTTACCTGCATGACAGATCTCTGATGCAGTATGCAGATAGGCTAGAGTCCTCCGGGAAATGTTTGCCTGAACTTCTAAGCTTAAGCGTTGAAGATTTAACATCTCAATTCCATATGAAGAGAGGCCATATTGCACGTTTCATTGATAGAAATAGTTCGTGTGTGGATCCCTTGACCAAAAGGTTTGATACCCCTTCCCCATCTACAAGCATCAAGAGGACTTATCAGTCTAACAACTCAAAGAGGATGCAGAGTATGAGAAGCCGAACCTTTCAAGATAAAACAGTTGAGCAAGCACTGAGCGAATTTAAGATCGAAGATGGGTATGTGTTCAAGGGGATTGTTGCAGCAGAACCAGCTGGTCATAGAGCATGCGGTTGTGTGCAACCACCTCCTATTGTTGATAAAGTTGCTCCTTATTCTGCCATTGAAAACATCTCCATTCAGAAATTAACTCCAGAATATAAGATTGGAATGGAGCGTTTGGTGAAGACTAAGACTCCCCCAATGAAAGCATCAGCACTGTGGCAGGATAAGCCAGCCATTATCCTCTGTATTAGACGTCCTGGGTGCATCATGTGCAGAGCAGAAGCTCACCAGCTATATGCCAGAAAACCGATATTTGATGCACTAGGATACCAACTATTCGCTGTAATTCATGAACACATAGAATCAGAGGTGAAAGACTTCTGGCCCAGGTACTGGGGAGGCGCTGTAATCTTTGACCAAGGTCGAGGATTCTTCAAAGCTCTAGGTGGTGGTAAATTAATGAAGGAAAAGTTCCTATCAGGATTTGTTTTCAACCCTCGGGCAATAGCAAACTATAAGCGTGCAAAAGCAATGGGAGTGAAGCAAAACTTCAATGGAGAAGGGGAAATTAAGGGTGGTCTGTTCATTCTTGGCTCAGCTAAGCGTGGTATTGCTTACCAGTTTATTGAGCGGAACTTCGGGGACTGGGCGCCTCTTTCTGAAGTAATTGAGATCTGTACAAAAATACAGAGCCAGCCACAAGCTCCAGGGGTATCCATCAAACCATCCCAAGAAGATAACCGAAGTTCGTCCCTAGAGTAA 4452 41.98 MSRAMTTKPILSLAELILVSISEIVNSTEYTEEEHGKFIEIGSYFYRAALAVVELQGIDPMPFDEILQSLNKSINHAKELVEKFLNGIQLVSDSDPITIINPLEEVIKEMGECLNKIATATFEEQNYVKMAILSLSDEMKNISTKIVQAQAMMNMQEIKTSLKEQSEKELEVIEKDLYPIDMDWDTNNTQSPVVSELSEGVTNTNGRGNQIKYSKVTSAMAELPSVTHYIEPLFETFFCPLTKNIMDDPVSLETGVSYERQAIVEWLKEFEESEEIFCPVTGQKLVSKAFNSNRALKSTIDKWKERNEIATIKVARAALSLASSDEMVLEAIKDLSSISKGKQFNIERIFNFDMLPLLANFLEYRDRDVRYAVLELLHQMAEINEDNKIMICNQLDVSRIINLLSSSHRSIRDRALLLLFELSRSQSLSDPIGSVTGGIPMLIIMKDNRSDEFASEKADETLRNLEKSPTNIKHMAEGGLMEPLIRHLTEGSEWMRIEMASYLGEIVIRHDCMAYVAERASSVLVKMVHEGDTFIRKAAFKALLQISSHRPNGKTLAKAGAVQVMAEEMFTRTICDELNDPKADATQILANICESCLDLGTLQVNAHGYTMSSDYVVYNIINLLKNSTPDESKFSTSLIRILLCLTKSPKPMDTLVSGVKNTEACDNLIYFISSPDEELRAAAIKLLISLSPYMGFPMAERLCKASDQVENLTSSITLTNQITEKQALSATFLAKLPHESLALNTMIVNKNIVPKLLQTIIQIQSSGTGMSRYASALLEGSVGILVRFTATLYDPQMLFLAKIHNFTSVLTNLLTQTSSDEVQKLSAIGLEKLSSASTSLSKPLNIKGNKIMKFLHLPKLLSLGPSKKGYLRVCPVHKGACSSQNTFCLVHAKAIEKLLTCLDNENEEVVEAALSAICTLVDEKVDLDSSVSLLNEFDTIRHVLNVVRMHKQESVWHKSFWLIEKFLIKGGEESLSNISQDRSLPAILATASHQGDSETRRIAEKILTHLNMGSGNAPPIYDLCLKLNKSRCRLFLYIQEWLGERSKVRTKPILSRVVSAAGIIGLPLKKMASFSVEDFVGNGVLKDLLPTLLDEGWDDVPTLKVMNSEDMDAINMTQQQKEAMEIRTYLHDRSLMQYADRLESSGKCLPELLSLSVEDLTSQFHMKRGHIARFIDRNSSCVDPLTKRFDTPSPSTSIKRTYQSNNSKRMQSMRSRTFQDKTVEQALSEFKIEDGYVFKGIVAAEPAGHRACGCVQPPPIVDKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKASALWQDKPAIILCIRRPGCIMCRAEAHQLYARKPIFDALGYQLFAVIHEHIESEVKDFWPRYWGGAVIFDQGRGFFKALGGGKLMKEKFLSGFVFNPRAIANYKRAKAMGVKQNFNGEGEIKGGLFILGSAKRGIAYQFIERNFGDWAPLSEVIEICTKIQSQPQAPGVSIKPSQEDNRSSSLE 1483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34325847 34334502 - CcPI632755_05g026080.1 Cco05g2608 180236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2608 1483 Gene3D - 514 691 IPR011989 -
Cco05g2608 1483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1012 IPR052608 -
Cco05g2608 1483 Pfam AhpC/TSA antioxidant enzyme 1327 1442 IPR032801 -
Cco05g2608 1483 SMART Ubox_2 236 303 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g2608 1483 CDD RING-Ubox_PUB 235 288 IPR045210 -
Cco05g2608 1483 SUPERFAMILY ARM repeat 317 643 IPR016024 -
Cco05g2608 1483 ProSiteProfiles U-box domain profile. 232 310 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g2608 1483 Gene3D - 796 1098 IPR011989 -
Cco05g2608 1483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 307 IPR013083 -
Cco05g2608 1483 Gene3D - 308 513 IPR011989 -
Cco05g2608 1483 MobiDBLite consensus disorder prediction 1192 1214 - -
Cco05g2608 1483 SUPERFAMILY ARM repeat 620 1020 IPR016024 -
Cco05g2608 1483 MobiDBLite consensus disorder prediction 1464 1483 - -
Cco05g2608 1483 Pfam Armadillo/beta-catenin-like repeat 882 920 IPR000225 GO:0005515(InterPro)
Cco05g2608 1483 ProSiteProfiles HEAT repeat profile. 354 390 IPR021133 -
Cco05g2608 1483 Pfam U-box domain 235 308 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g2608 1483 SMART arm_5 384 424 IPR000225 GO:0005515(InterPro)
Cco05g2608 1483 SMART arm_5 794 835 IPR000225 GO:0005515(InterPro)
Cco05g2608 1483 SMART arm_5 342 382 IPR000225 GO:0005515(InterPro)
Cco05g2608 1483 SMART arm_5 882 922 IPR000225 GO:0005515(InterPro)
Cco05g2608 1483 SMART arm_5 468 508 IPR000225 GO:0005515(InterPro)
Cco05g2608 1483 SUPERFAMILY RING/U-box 219 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2608 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2608 Cco-Chr5:34325847 Cco06g0985 Cco-Chr6:13377838 1.20E-10 dispersed
Cco03g1423 Cco-Chr3:28452964 Cco05g2608 Cco-Chr5:34325847 4.50E-10 transposed
Cco05g2060 Cco-Chr5:29644331 Cco05g2608 Cco-Chr5:34325847 3.30E-11 transposed
Cco08g1083 Cco-Chr8:22622286 Cco05g2608 Cco-Chr5:34325847 8.10E-66 transposed
Cco08g1086 Cco-Chr8:22635480 Cco05g2608 Cco-Chr5:34325847 6.70E-43 transposed
Cco01g0639 Cco-Chr1:6553085 Cco05g2608 Cco-Chr5:34325847 9.10E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29