Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2609 ATGTGGGTTCCCCACGTGGGTGATTGTCGAGCGAGTGTCAAGTGGGGGTCAGCTTGGTCGGTTAACGTCGAGCTGGAGATGAATGAGATTGCCGATCCGCCGGTCATGCGGGCAGGCGGTCTCGTCGAGTTTGTTAGAATTGGGAATCCCTGGTACCAAAGAATGTGGAGAAACATTGTCAAAAGAGTTGCTTCAGGGAAAGCTACATTATTCTCCGAGTTGTCTTCTTCTAGCTCAAGAAAAGTTATTGAAGACCATATCTTTCTCGATCAAATTAGATCTTCCGGGACGCTCGAAAGCTTGAATACTTGTTGCCAATTAGCGGGCTCTCGTAGAATCAGCTTTCTCCATCCCCACAAAGTTGGATTTACGAACTCCAATTTCCCACATTCAAGCAACCCCGTAGCTTTTTCTGGGGTTCTAAACCATGCCAAAGGCTACGCTACTGCTGCTGAGGCAGCCATATCCGAGGAAGATTTATCGGGCTCCGAAGAAATTCAGGAATTGATGGAGGAGCTAAGCAAACAAGATAAGCTGGAGCCTCACTTTAAGCAGCCTAAGAAAATGGTCGATGGAATGGGGGTAACTAAGTACAATATGCTACGGAAGAGACAGATAAAGATAGAGACGGAGGCATGGGAAGAGGCTGCCAGAGAATACCAAGAACTTTTAACAGATATGTGTGAGCAGAAGCTGGCGCCCAATTTACCTTACATGAAGTCTTTATTCCTTGGTTGGTTTGAACCTTTGCGTGATGCGATTGCTGCGGACCAAGAATTTTGCAAGGATAAGAAGAGTCGAGTGTCTCATGCTCCTTATTTTGATCTTCTACCGGCTGATATGATGGCAGTGATTACAATGCATAAGTTAATGGGGTTGCTGATGAGTAGCACTGGAGGCAATGGTAGTGTCAGGGTAGTCCAAGCTGCCTGTCAGATAGGAGAAGCAATTGAACACGAGGTTAGAATATGCAGTTTCTTTGAGAAGACAAAGAAGAACAGTAATGGAAAAAATATTGAAGAAGAAACCGAGCCTGTAGCCGAACAACAGGAGAAACTAGCCAAAGATCAAGACAGATTGAGGAAAAAAGTCACCAAACTGATGAAACAACAGAAGTTGCAGCAAGTGAAGATGATAGTTAAGGAGCATGATGATTTAAAGCCTTGGGGCCAGGATGTTCATGTGAAGGTAGGTTGCCGTTTGATTCAGTTGTTGATGGAAACAGCTTATATTCAACCTCCAGTTGATCAGTTAGGAGATGGTCCACCTGATATTCGCCCCGCATTTGTCCATACTCTTAAAACCATCACAAAAGAAGCACAGAAGACTAGCAGGAGATATGGTGTTATTGAATGTGATCCACTTGTTCGCAGAGGGCTGGAGAAAACTGCTAGACACATGGTCATTCCGTATATGCCTATGGTGGTGCCTCCTCTTAATTGGACAGGGTATGACAAAGGGGCATACTTATTCCTACCATCATATGTAATGCGAATACATGGGGCAAAACAGCAACGTGAAGCAGTTAAAAGGACTCCAAAGAAGCAACTAGAGCCTGTTTTCGAGGCTCTCGATACACTTGGAAGAACCAAATGGAGGGTGAACAAAAGAGTTCTTAGCATTATCGAGAGGATATGGGCTAGTGGTGGTCGTCTTGCTGACTTGGTTGACCATGAAGATGTTCCTCTGCCGGAGGAGCCAAGTGGGGAAGATGAAGCAGAAATTCGAAAATGGAAGTGGAAAGTCAAGGCTGTGAAAAAGGAGAATAGTGAAAGGCATTCACAGCGGTGTGACATAGAGCTTAAGCTTGCGGTGGCCAGGAAAATGAAAGGGGAGGATGGCTTCTACTATCCACACAACCTAGATTTTCGAGGTCGTGCATACCCCATGCATCCATATTTGAATCATCTTGGTTCTGATTTGTGTCGAGGAATTCTAGAATTTGCAGAGGGAAGACCTCTTGGAGAGTCAGGGTTACGTTGGTTAAAGATACATTTAGCAAATCTGTATGCTGGTGGTGTGGATAAGTTATCTTATAAGGATAGAGTATCATTTACCGAGAACCATTTGGATGAGATTTTTGATTCTGCAGACAGGCCTCTCGAAGGAAACCAGTGGTGGTTGGGTGCAGAGGATCCTTTTCAGTGCTTGGCAGTGTGTATTAATCTGTCAGAGGCTTTAAGAAGTCCCTCGCCGGAAACTACTATTTCCCATATGCCTGTACATCAGGATGGTTCCTGCAATGGCTTGCAACACTATGCAGCTCTTGGGAGGGATAAGTTGGGAGCAGTGGCAGTTAACCTTGTAGCAGGTGACAAGCCCGCAGATGTGTACTCAGGAATTGCGTCCAGAGTTCTTGACATAATGCGAAGTGATGCAGAGAAAGATCCTGCAAGTAATCCACATGCGTTGCATGCTAGACTCTTAATCAATCAGGTGGATCGTAAACTGGTGAAGCAAACAGTCATGACATCAGTTTATGGTGTTACTTATGTTGGTGCTCGAGATCAGATTAAAAGAAGGTTGAAAGAACGAGCATCCATTGCTGATGATTCACAATTATTTGCGGCTTCTTGCTATGCAGCTAAAACTACCTTGATTGCTTTGGGGGAAATGTTTGAAGCAGCAAGAAGTATCATGAGCTGGCTTGGTGAATGTGCAAAGGTAATAGCTTCAGAAAATCAGCCAGTTCGATGGACAACTCCTCTTGGACTGCCGGTGGTGCAACCTTACCGGCAACTAGGAAGGCATCTTATCAAGACTTCCTTGCAAGTGTTGACTCTACAACGAGAAACTGACAAGGTCATGGCTAAGCGTCAGAGAACAGCATTTCCTCCAAATTTTGTACACTCGCTTGATGGTTCTCATATGATGATGACTGCTGTCGCCTGCAAAAGGGCAGGCCTAAACTTTGCAGGAGTCCATGATTCATATTGGACCCATGCATGTGATGTTGATGAAATGAACAGAATACTTAGGGAGAAGTTTGTTGAGCTATATGAGGCCCCTATTCTGGAGAATTTACTGGAAAACTTCCAAAAGTCCTTCCCCAAGTTAACGTTTCCTCCCTTACCTGATCGGGGAGACTTTGATCTCAAAGATGAGACAAGCATGGCTTGGGGTCAAGCTGGTCAAGGGCAGTGCTGTCCTGATACTTGTACATATACTTCAGATTTTGGGGTTTGGGATCATATCACAAGCAGCAGCTTCAAGCCTGAATCTTGCTATACTAATTGTGAATCAAAGCCAGCAAGTAGTGGCATATGGTACGAAATGTGTATTCTTCAAAGGGAAACTGTGGAAGTTACATGGCCACCATGA 3321 44.72 MWVPHVGDCRASVKWGSAWSVNVELEMNEIADPPVMRAGGLVEFVRIGNPWYQRMWRNIVKRVASGKATLFSELSSSSSRKVIEDHIFLDQIRSSGTLESLNTCCQLAGSRRISFLHPHKVGFTNSNFPHSSNPVAFSGVLNHAKGYATAAEAAISEEDLSGSEEIQELMEELSKQDKLEPHFKQPKKMVDGMGVTKYNMLRKRQIKIETEAWEEAAREYQELLTDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAADQEFCKDKKSRVSHAPYFDLLPADMMAVITMHKLMGLLMSSTGGNGSVRVVQAACQIGEAIEHEVRICSFFEKTKKNSNGKNIEEETEPVAEQQEKLAKDQDRLRKKVTKLMKQQKLQQVKMIVKEHDDLKPWGQDVHVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMVVPPLNWTGYDKGAYLFLPSYVMRIHGAKQQREAVKRTPKKQLEPVFEALDTLGRTKWRVNKRVLSIIERIWASGGRLADLVDHEDVPLPEEPSGEDEAEIRKWKWKVKAVKKENSERHSQRCDIELKLAVARKMKGEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRVSFTENHLDEIFDSADRPLEGNQWWLGAEDPFQCLAVCINLSEALRSPSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAVAVNLVAGDKPADVYSGIASRVLDIMRSDAEKDPASNPHALHARLLINQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERASIADDSQLFAASCYAAKTTLIALGEMFEAARSIMSWLGECAKVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLENFQKSFPKLTFPPLPDRGDFDLKDETSMAWGQAGQGQCCPDTCTYTSDFGVWDHITSSSFKPESCYTNCESKPASSGIWYEMCILQRETVEVTWPP 1106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34334527 34347454 - CcPI632755_05g026090.1 Cco05g2609 180237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2609 1106 SMART RPOL_N_2 203 529 IPR029262 -
Cco05g2609 1106 Pfam DNA-directed RNA polymerase N-terminal 204 529 IPR029262 -
Cco05g2609 1106 FunFam DNA-directed RNA polymerase 761 950 - -
Cco05g2609 1106 SUPERFAMILY DNA/RNA polymerases 189 1033 IPR043502 -
Cco05g2609 1106 Coils Coil 203 223 - -
Cco05g2609 1106 Gene3D - 530 611 IPR024075 GO:0003899(InterPro)
Cco05g2609 1106 Gene3D - 182 528 IPR037159 -
Cco05g2609 1106 FunFam DNA-directed RNA polymerase 184 528 - -
Cco05g2609 1106 Pfam DNA-dependent RNA polymerase 652 1018 IPR046950 -
Cco05g2609 1106 FunFam DNA-directed RNA polymerase 652 730 - -
Cco05g2609 1106 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 740 751 IPR002092 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g2609 1106 FunFam DNA-directed RNA polymerase 530 612 - -
Cco05g2609 1106 Coils Coil 350 370 - -
Cco05g2609 1106 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 147 1034 IPR002092 GO:0003677(InterPro)|GO:0003899(PANTHER)|GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0006390(PANTHER)|GO:0034245(PANTHER)
Cco05g2609 1106 Gene3D - 652 730 - -
Cco05g2609 1106 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 813 827 IPR002092 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g2609 1106 Gene3D - 761 950 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2609 K10908 - - csv:101217958 1586.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2609 Cco-Chr5:34334527 Cco11g0515 Cco-Chr11:5432678 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1006 . . . . . . . . . Cmo18g01103 . Cma18g01081 . . Sed06g1812 Cpe09g00242 . Bhi07g01439 Tan04g0951 Cmetu04g2545 Lac13g0412 Hepe10g1827 . . Cla05g02372 Cam05g2540 Cec05g2571 Cco05g2609 Clacu05g2538 Cmu05g2397 Cre05g2514 . . . . Lsi04g00334 Csa05g02536 Chy10g01079 Cme10g00332 . . . . . . . . . . . . . . Car15g00220 Cpe13g00995 . . . . . . . . . . . . . . . . . Chy09g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000643 2 4 3 3 2 3 3 3 3 3 3 3 4 3 4 5 3 4 5 3 3 3 3 5 4 3 3 3 4 3 100